Structure of the type I L-asparaginase from the hyperthermophilic archaeon Pyrococcus horikoshii at 2.16 Å resolution

Acta Crystallographica Section D: Biological Crystallography

Volumn 61, Issue 3, 2005, Pages 294-301

  Yao, Min ^a   Yasutake, Yoshiaki ^a   Morita, Hazuki ^a   Tanaka, Isao ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; PYROCOCCUS HORIKOSHII;

ASPARAGINASE;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; CRYSTALLIZATION; DIMERIZATION; ENZYMOLOGY; MOLECULAR GENETICS; PROTEIN CONFORMATION; PYROCOCCUS HORIKOSHII; SEQUENCE HOMOLOGY; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; ASPARAGINASE; BINDING SITES; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; PYROCOCCUS HORIKOSHII; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 24044549361     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444904032950     Document Type: Article

References (39)

1. Abrahams, J. P. & Leslie, A. G. W. (1996). Acta Cryst. D52, 30-42.
2. Aghaiypour, K., Wlodawer, A. & Lubkowski, J. (2001a). Biochemistry, 40, 5655-5664.
3. Aghaiypour, K., Wlodawer, A. & Lubkowski, J. (2001b). Biochim. Biophys. Acta, 1550, 117-128.
4. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Nucleic Acids Res. 25, 3389-3402.
5. Bonthron, D. & Jaskólski, M. (1997). Acta Biochim. Pol. 44, 491-504.
6. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, N., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998). Acta Cryst. D54, 905-921.
7. Cedar, H. & Schwartz, J. H. (1967). J. Biol. Chem. 242, 3753-3755.
8. Cowtan, K. & Main, P. (1998). Acta Cryst. D54, 487-493.
9. Dunlop, P. C., Meyer, G. M., Ban, D. & Roon, R. J. (1978). J. Biol. Chem. 253, 1297-1304.
10. Geuenich, S., Haberl, C., Egger, D., Kaspers, U., Hultner, L., Wilmanns, W. & Denzlinger, C. (1998). Biochem. Pharmacol. 55, 447-453.
11. Holm, L. & Sander, C. (1993). J. Mol. Biol. 233, 123-138.
12. Jakob, C. G., Lewinski, K., LaCount, M. W., Roberts, J. & Lebioda, L. (1997). Biochemistry, 36, 923-931.
13. Jaskólski, M., Kozak, M., Lubkowski, J., Palm, G. & Wlodawer, A. (2001). Acta Cryst. D57, 369-377.
14. Jones, G. E. (1977). J. Bacteriol. 130, 128-130.
15. Jones, T. A., Zou, J. Y., Cowan, S. W. & Kjeldgaard, M. (1991). Acta Cryst. A47, 110-119.
16. Kraulis, P. J. (1991). J. Appl. Cryst. 24, 946-950.
17. La Fortelle, E. de & Bricogne, G. (1997). Methods Enzymol. 276, 472-494.
18. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993). J. Appl. Cryst. 26, 283-291.
19. Lubkowski, J., Dauter, M., Aghaiypour, K., Wlodawer, A. & Dauter, Z. (2003). Acta Cryst. D59, 84-92.
20. Lubkowski, J., Palm, G. J., Gilliland, G. L., Derst, C., Rohm, K. H. & Wlodawer, A. (1996). Eur. J. Biochem. 241, 201-207.
21. Lubkowski, J., Wlodawer, A., Ammon, H. L., Copeland, T. D. & Swain, A. L. (1994). Biochemistry, 33, 10257-10265.
22. Lubkowski, J., Wlodawer, A., Housset, D., Weber, I. T., Ammon, H. L., Murphy, K. C. & Swain, A. L. (1994). Acta Cryst. D50, 826-832.
23. Mashburn, L. T. & Wriston, J. C. (1964). Arch. Biochem. Biophys. 105, 450-452.
24. Matthews, B. W. (1968). J. Mol. Biol. 33, 491-497.
25. Merritt, E. A. & Bacon, D. J. (1997). Methods Enzymol. 277, 505-524.
26. Miller, M., Rao, M., Wlodawer, A. & Gribskov, M. (1993). FEBS Lett. 328, 275-279.
27. Nicholls, A., Sharp, K. A. & Honig, B. (1991). Proteins Struct. Funct. Genet. 11, 281-296.
28. Ortlund, E., Lacount, M. W., Lewinski, K. & Lebioda, L. (2000). Biochemistry, 39, 1199-1204.
29. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
30. Palm, G. J., Lubkowski, J., Derst, C., Schleper, S., Röhm, K.-H. & Wlodawer, A. (1996). FEBS Lett. 390, 211-216.
31. Richardson, J. S. (1981). Adv. Protein Chem. 34, 167-339.
32. Röhm, K. H. & Van Etten, R. L. (1986). Arch. Biochem. Biophys. 244, 128-136.
33. Sanches, M., Barbosa, J. A., de Oliveira, R. T., Abrahão Neto, J. & Polikarpov, I. (2003). Acta Cryst. D59, 416-422.
34. Schwartz, J. H., Reeves, J. Y. & Broome, J. D. (1966). Proc. Natl Acad. Sci. USA, 56, 1516-1519.
35. Swain, A. L., Jaskolski, M., Housset, D., Rao, J. K. & Wlodawer, A. (1993). Proc. Natl Acad. Sci. USA, 90, 1474-1478.
36. Terwilliger, T. C. (2000). Acta Cryst. D56, 965-972.
37. Terwilliger, T. C. & Berendzen, J. (1999). Acta Cryst. D55, 849-861.
38. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). Nucleic Acids Res. 22, 4673-4680.
39. Vriend, G. (1990). J. Mol. Graph. 8, 52-56.