Molecular characterization of Pythium group F isolates by ribosomal-and intermicrosatellite-DNA regions analysis

European Journal of Plant Pathology

Volumn 112, Issue 4, 2005, Pages 301-310

  Vasseur, Valérie ^a   Rey, Patrice ^a   Bellanger, Estelle ^a   Brygoo, Yves ^b   Tirilly, Yves ^a  

^a TECHNOPÔLE BREST IROISE   (France)

^b CEMAGREF   (France)

Author keywords

Filamentous sporangia; Genetic polymorphism; ISSR; Minor pathogen; Oomycetes

Indexed keywords

GENETIC ANALYSIS;

CUCUMIS SATIVUS; LACTUCA; LYCOPERSICON ESCULENTUM; OOMYCETES; PYTHIUM;

EID: 24044530933     PISSN: 09291873     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10658-005-4115-2     Document Type: Article

References (43)

1. HMA Abdelzaher T Morikawa T Ichitani MA Elnaghy 1995 Classification of Pythium group F based on mycelial protein and isozyme patterns Mycoscience 36 45 49
2. JJ Burdon J Silk 1997 Sources and patterns of diversity in plant-pathogenic fungi Phytopathology 87 664 669
3. T Burgess MJ Wingfield BW Wingfield 2001 Simple sequence repeat markers distinguish among morphotypes of Sphaeropsis sapinea Applied and Environmental Microbiology 67 354 362
4. W Chen JW Hoy 1993 Molecular and morphological comparison of Pythium arrhenomanes and P. graminicola Mycological Research 97 1371 1378
5. W Chen JW Hoy RW Schneider 1992 Species-specific polymorphisms in transcribed ribosomal DNA of five Pythium species Experimental Mycology 16 22 34
6. M Chérif Y Tirilly RR Bélanger 1997 Effect of oxygen concentration on plant growth, lipidperoxidation, and receptivity of tomato roots to Pythium F under hydroponic conditions European Journal of Plant Pathology 103 255 264
7. RJ Favrin JE Rahe B Mauza 1988 Pythium spp. associated with crown rot of cucumbers in British Columbia greenhouses Plant Disease 72 683 687
8. J Felsenstein 1989 PHYLIP-Phylogeny Inference Package (version 3.2) Cladistics 5 164 166
9. D Field C Wills 1996 Long,, polymorphic microsatellites in simple organisms Proceedings of the Royal Society of London Series B Biological Sciences 263 209 215
10. DM Francis DA St Clair 1997 Population genetics of Pythium ultimum Phytopathology 87 454 461
11. DM Francis MF Gehlen DA St Clair 1994 Genetic variation in homothallic and hyphal swelling isolates of Pythium ultimum var. ultimum and P. ultimum var. sporangiferum Molecular Plant Microbe Interactions 7 6 766 775
12. K Groppe I Sanders A Wiemken T Boller 1995 A microsatellite marker for studying the ecology and diversity of fungal endophytes (Epichloe spp.) in grass Applied and Environmental Microbiology 61 3943 3949
13. CR Grünig TN Sieber O Holdenrieder 2001 Characterisation of dark septate endophytic fungi (DSE) using inter-simple-repeat-anchored polymerase chain reaction (ISSR-PCR) amplification Mycological Research 105 24 32
14. HC Huang RJ Morrison HH Muendel DJS Barr GR Klassen J Buchko 1992 Pythium spp. group G, a form of Pythium ultimum causing damping-off of safflower Canadian Journal of Plant Pathology 14 229 232
15. SF Jenkins CW Averre 1983 Root diseases of vegetables in hydroponic culture systems in North Carolina greenhouses Plant Disease 67 968 970
16. K Kageyama A Ohyama M Hyakumachi 1997 Detection of Pythium ultimum using polymerase chain reaction with species-specific primers Plant Disease 81 1155 1160
17. K Kageyama H Uchino M Hyakumachi 1998 Characterization of the hyphal swelling group of Pythium: DNA polymorphisms and cultural and morphological characteristics Plant Disease 82 218 222
18. CA Lévesque AWAM de Cock 2004 Molecular phylogeny and taxonomy of the genus Pythium Mycological Research 108 12 1363 1383
19. C Linde GH Kemp MJ Wingfield 1994 Pythium irregulare associated with Pinus seedling death on previously cultivated lands Plant Disease 78 1002 1005
20. S Longato P Bonfante 1997 Molecular identification of mycorrhizal fungi by direct amplification of microsatellite regions Mycological Research 101 425 432
21. FN Martin 1990a Variation in the ribosomal DNA repeat unit within single-oospore isolates of the genus Pythium Genome 33 585 591
22. FN Martin 1990b Taxonomic classification of asexual isolates of Pythium ultimum based on cultural characteristics and mitochondrial DNA restriction patterns Experimental Mycology 14 47 56
23. Martin FN (1995a) Pythium. In: Eukaryotes, Vol. 2. (pp. 17-36) Pergamon Press, Oxford
24. FN Martin 1995b Electrophoretic karyotype polymorphisms in the genus Pythium Mycologia 87 3 333 353
25. C Matsumoto K Kageyama H Suga M Hyakumachi 1999 Phylogenetic relationships of Pythium species based on ITS and 5,,8 s sequences of the ribosomal DNA Mycoscience 40 321 331
26. W Meyer TG Mitchell EZ Freedman R Vilgalys 1993 Hybridization probes for conventional DNA fingerprinting used as single primers in the polymerase chain reaction to distinguish isolates of Crytococcus neoformans Journal of Clinical Microbiology 31 2274 2280
27. D Mills K McCluskey 1990 Electrophoretic karyotypes of fungi: the new cytology Molecular Plant Microbe Interactions 3 6 351 357
28. GW Moorman S Kang DM Geiser SH Kim 2002 Identification and characterization of Pythium species associated with greenhouse floral crops in Pennsylvania Plant Disease 86 1227 1231
29. AJ van der Plaats-Niterink 1981 Monograph of the genus Pythium. Studies in Mycology. No. 21 Centraalbureau voor Schimmelcultures Baarn, Netherlands
30. C Rafin Y Tirilly 1995 Characteristics and pathogenicity of Pythium spp. associated with root rot of tomatoes in soilless culture in Brittany, France Plant Pathology 44 779 785
31. C Rafin Y Brygoo Y Tirilly 1995 Restriction analysis of amplified ribosomal DNA of Pythium spp. isolated from soilless culture systems Mycological Research 99 277 281
32. P Rey P Nodet Y Tirilly 1998a Pythium F induce a minor but ubiquitous disease in tomato soilless cultures Journal of Plant Pathology 79 173 180
33. P Rey N Benhamou Y Tirilly 1998b Ultrastructural and cytochemical investigation of asymptomatic infection by Pythium spp Phytopathology 88 234 244
34. P Rey S Leucart H Désilets RR Bélanger JP Larue Y Tirilly 2001 Production of indole-3-acetic acid and tryptophol by Pythium ultimum and Pythium group F: possible role in pathogenesis European Journal of Plant Pathology 107 895 904
35. Salt GA (1979) The increasing interest in "minor pathogens". In: Soilborne Plant Pathogens (pp. 289-312) Academic Press, New York
36. J Sambrook EF Fritsch T Maniatis 1989 Molecular Cloning: A Laboratory Manual. 2 Cold Spring Harbor Laboratory Press Cold Spring Harbor, New York
37. AM Schurko L Mendoza CA Lévesque NL Desaulniers AWAM de Cock GR Klassen 2003 A molecular phylogeny of Pythium insidiosum Mycological Research 107 537 544
38. ME Stanghellini WC Kronland 1986 Yield loss in hydroponically grown lettuce attributed to subclinal infection of feeder rootlets by Pythium dissotocum Plant Disease 70 1053 1056
39. ME Stanghellini SL Rasmussen 1994 Hydroponics, a solution for zoosporic pathogens Plant Disease 78 1129 1138
40. I Tenzer S Ivanissevich M Morgante C Gessler 1999 Identification of microsatellite markers and their application to population genetics of Venturia inaequalis Phytopathology 89 748 753
41. K Thinggaard AL Middelboe 1989 Phytophthora and Pythium in pot plant cultures on ebb and flow bench with recirculating nutrient solution Journal of Phytopathology 125 343 352
42. M Viaud A Pasquier Y Brygoo 2000 Diversity of soil fungi by PCR-RFLP of ITS Mycological Research 104 1027 1032
43. PH Wang JG White 1997 Molecular characterization of Pythium species based on RFLP analysis of the internal transcribed spacer region of ribosomal DNA Physiological and Molecular Plant Pathology 51 129 143