Additional experiences to elucidate the microbial component of soil suppressiveness towards strawberry black root rot complex

Annals of Applied Biology

Volumn 146, Issue 4, 2005, Pages 421-431

  Manici, L M ^a   Caputo, F ^a   Baruzzi, G ^a  

^a ISTITUTO NAZIONALE DELLA NUTRIZIONE   (Italy)

Author keywords

Biodiversity; Culturable bacteria; Fragaria x ananassa Duch; Pythium; Rhizoctonia; Soil health; Total fungi

Indexed keywords

DISEASE CONTROL; FUNGAL DISEASE; INHIBITION; ROOT COLONIZATION; ROOT ROT; SOIL MICROORGANISM;

EASTERN HEMISPHERE; EURASIA; EUROPE; ITALY; SOUTHERN EUROPE; WORLD;

CYLINDROCARPON; FRAGARIA X ANANASSA; FUNGI; FUSARIUM OXYSPORUM; FUSARIUM SOLANI; HYPHOMYCETES; NEONECTRIA RADICICOLA; PESTALOTIA; PESTALOTIA LONGISETA; PYTHIUM; RHIZOCTONIA;

EID: 24044441617     PISSN: 00034746     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1744-7348.2005.040051.x     Document Type: Article

References (66)

1. Abawi G S, Widmer T L. 2000. Impact of soil health management practices on soil-borne pathogens, nematodes and root diseases of vegetable crops. Applied Soil Ecology 15:37-47.
2. Anderson T H, Domsch K H. 1986. Carbon assimilation and microbial activity in soil. Zeitschrift für Pflanzenernährung Bodenkunde 149:457-468.
3. Ayers W A, Lumsden R D. 1975. Factors affecting production and germination of oospores of three Pythium species. Phytopathology 65:1094-1100.
4. Bateman G L, Murray G, Gutteridge R J, Coşcun H. 1998. Effects of methods of straw disposal and depth cultivation on populations of Fusarium spp. in soil and on brown foot rot in continuous winter wheat. Annals of Applied Biology 132:35-47.
5. Bolton H Jr, Elliot L F, Papendick R I, Bezdicek D F. 1985. Soil microbial biomass and selected soil enzyme activity: effect of fertilization and cropping practices. Soil Biology and Biochemistry 17:297-302.
6. Botha A, Denman S, Lamprecht S C, Mazzola M, Crous P W. 2003. Characterisation and pathogenicity of Rhizoctonia isolates associated with black root rot of strawberries in the Western Cape Province, South Africa. Australasian Plant Pathology 32:195-201.
7. Burgess L W, Liddell C M, Summerell B A. 1988. Laboratory Manual for Fusarium Research. Sydney, Australia: Department of Plant Pathology and Entomology, University of Sydney.
8. Chen W, Hoitink H A J, Schmitthenner A F, Tuovinen O H. 1988a. The role of microbial activity in suppression of damping-off caused by Pythium ultimum. Phytopathology 78:314-322.
9. Chen W, Hoitink H A J, Madden L V. 1988b. Microbial activity and biomass in container media for predicting suppressiveness to damping-off caused by Pythium ultimum. Phytopathology 78:1447-1450.
10. Ciccarese F, Cirulli M. 1983. Osservazioni sui deperimenti dei fragoleti nell'Italia meridionale. Informatore Fitopatologico 33:59-62.
11. Craft C M, Nelson E B 1996. Microbial properties of composts that suppress damping-off and root rot of creeping bentgrass caused by Pythium graminicola. Applied Environmental Microbiology 62:1550-1557.
12. Davis R M, Nunez J J. 1999. Influence of crop rotation on the incidence of Pythium- and Rhizoctonia-induced carrot root dieback. Plant Disease 83:146-148.
13. D'Ercole N. 1970. Sul deperimento progressivo con necrosi radicale della fragola. Atti 4° convegno Nazionale della fragola, Cesena (Italy), pp. 389-395.
14. Dhingra O D, Sinclair J B. 1985. Basic Plant Pathology Methods, pp. 179-189. Boca Raton, FL: CRC Press.
15. Di Cello F, Bevivino A, Chiarini L, Fani R, Paffetti D, Tabacchioni S, Dalmastri C. 1997. Biodiversity of Burkholderia cepacia population isolated from the maize rhizosphere at different plant growth stages. Applied and Environmental Microbiology 63:4485-4493.
16. Elmer W H, LaMondia J A. 1999. Influence of ammonium sulphate and rotation crops on strawberry black root rot. Plant Disease 83:119-123.
17. Erhart E, Burian K, Hartl W, Stich K. 1999. Suppression of Pythium ultimum by biowaste composts in relation to compost microbial biomass, activity and content of phenolic compounds. Journal of Phytopathology 147:299-305.
18. Green H, Jensen D F. 2000. Disease progression by active mycelial growth and biocontrol of Pythium ultimum var. ultimum studied using a rhizobox system. Phytopathology 90:1049-1055.
19. Grifoni A Bazzicalupo M, Di Serio C, Fancelli S, Fani R. 1995. Identification of Azospirillum strains by restriction fragment length polymorphism of the 16S rDNA and of the histidine operon. FEMS Microbiology Letters 127:85-91.
20. Grünwald N J, Workneh F, Hu S, van Bruggen A H C. 1997. Comparison of an in vitro and a damping-off assay to test soils for suppressiveness to Pythium aphnidermatum. European Journal of Plant Pathology 103:55-63.
21. Grünwald N J, Hu S, van Bruggen A H C. 2000. Short-term cover crop decomposition in organic and conventional soils: soil microbial and nutrient cycling indicator variables associated with different levels of soil suppressiveness to Pythium aphanidermatum. European Journal of Plant Pathology 106:51-65.
22. Gu Y-H, Mazzola M. 2003. Modification of fluorescent pseudomonad community and control of apple replant disease induced in a wheat cultivar-specific manner. Applied Soil Ecology 24:57-72.
23. IMI. 196422003. Descriptions of fungi and bacteria. Sheet No. 1-1580. ISSN 0009-9716, Bakeham Lane, Egham, Surrey, UK : CABI Bioscience
24. Jeffers S, Martin S B. 1986. Comparison of two media selective for Phytophthora and Pythium species. Plant Disease 70:1038-1043.
25. Kennedy A C, Papendick R I. 1995. Microbial characteristics of soil quality. Journal of Soil and Water Conservation 50:243-248.
26. Knudsen I M B, Larseen K M, Jensen D F, Hockenhull J. 2002. Potential suppressiveness of different field soils to Pythium dumping off of sugar beet. Applied Soil Ecology 21:119-129.
27. Kronland W C, Stanghellini M E. 1988. Clean slide technique for the observation of anastomosis and nuclear condition in Rhizoctonia solani. Phytopathology 78:820-822.
28. Laughlin R J, Stevens R J. 2002. Evidence for fungal dominance in denitrification and codenitrification in a grassland soil. Soil Science Society of America Journal 66:1540-1548.
29. Lumsden R D, Lewis J A, Papavizas G C. 1983. Effect of organic amendments on soilborne plant diseases and pathogen antagonists. In. Environmentally Sound Agriculture, pp. 51-70. Ed. W Lockeretz. New York: Praeger Scientific.
30. Lynch J M, Panting L M. 1980. Variation in the size of soil bio-mass. Soil Biology and Biochemistry 12:547-550.
31. Maas J L. 1984. Compendium of Strawberry Diseases. Beltsville, MD: APS Press. 138 pp.
32. Mai W F, Abawi G S. 1978. Determining the cause and extent of apple, cherry and pear disease under controlled conditions. Phytopathology 68:1540-1544.
33. Manici L M, Baruzzi G, Burzi P L. 2000. Indagine sulla colonizzazione di patogeni fungini su radici di piante fragola fresche (cime radicate) e frigoconservate. Conv. Naz "La fragola nel 2000". Metaponto (MT), p. 63.
34. Manici L M, Ciavatta C, Kelderer M, Erschbaumer G. 2003. Replant problem in South Tyrol: role of fungal pathogens and microbial populations in conventional and organic apple orchards. Plant and Soil 256:315-324.
35. Manici L M, Caputo F, Babini V. 2004. Effect of green manure on Pythium spp. population and microbial communities in intensive cropping systems Plant and Soil 263:133-142.
36. Martin F N. 1988. Identification, isolation frequency and pathogenicity of anastomosis groups of binucleate Rhizoctonia spp. from strawberry roots. Phytopathology 78:379-384.
37. Martin F N. 1999. Strawberry root rot and the recovery of Pythium and Rhizoctonia spp. In Proceedings of the Annual International Research Conference on Methyl Bromide Alternatives and Emission Reductions. Paper No. 6.
38. Martin F N. 2000. Rhizoctonia spp. recovered from strawberry roots in central coastal California. Phytopathology 90:345-353.
39. Mazzola M. 1997. Identification and pathogenicity of Rhizoctonia spp. isolated from apple roots and orchard soil. Phytopathology 87:582-587.
40. Mazzola M. 2002. Mechanisms of natural soil suppressiveness to soilborne diseases. Antoine van Leeuwenhoek 81:557-564.
41. Mazzola M, Gu Y-H. 2000. Impact of wheat cultivation on microbial communities from replant soils and apple growth in greenhouse trials. Phytopathology 90:114-119.
42. Mena A J, Palacios de Garcia M E, Gonzàles M A. 1975. Root diseases of strawberry caused by Fusarium oxysporum Sch. F.s fragariae Winks et Will and Rhizoctonia fragariae Husain et McKeen. Revista Agronomica del Noroesta Argentina 12:299-307.
43. Molot P M, Ferrière H. 1989. Susceptibility of strawberry cultivars to Rhizoctonia solani and R. fragariae as influenced by inoculation technique seasonal variations and physiological condition of the plants. Acta Horticulturae 265:535-540.
44. Nelson P E, Tousson T A, Marasas W F O. 1983. Fusarium Species. An Illustrated Manual for Identification. Pennsylvania, PA: The Pennsylvania State University Press. 190 pp.
45. Nitta T. 1991. Diversity of root fungal floras: its implication on soil-borne diseases and crop growth. Japanese Agriculture Research Quarterly 25:6-11.
46. Pankhurst C E, Hawke B G, McDonald H J, Kirkby C A, Buckerfield J C, Michelsen P, O'Brien K A, Gupta V V S R, Doube B M. 1995. Evaluation of soil biological properties as potential bioindicators of soil health. Australian Journal of Experimental Agriculture 35:1015-1028.
47. Pinkerton J N, Ivors K L, Reeser P W, Bristow P R, Windom G E. 2002. The use of soil solarization for the management of soil-borne plant pathogens in strawberry and red raspberry production. Plant Disease 86:645-651.
48. Samson R A, van Reenen-Hoekstra E S. 1988. Introduction to Food-borne Pathogens. 3rd Edn. Baarn and Delft: Centraalbureau vor Schimmelcultures. 299 pp.
49. Schneider S, Roessli D, Escoffier L. 2000. Arlequin ver. 2000. A Software for Population Genetic Data Analysis. Geneva, Switzerland: Genetic and Biometry Laboratory, University of Geneva.
50. Schnürer J, Clarholm M, Rosswall T. 1985. Microbial biomass and activity in an agricultural soil with different organic matter contents. Soil Biology and Biochemistry 17:611-618.
51. Schut P. 1976. Glossary of Terms in Soil Science. Publication 1459. Canada: Department of Agriculture. 44 pp.
52. Simon A, Ridge E H. 1974. The use of ampicillin in a simplified selective medium for the isolation of fluorescent pseudomonads. Journal of Applied Bacteriology 37:459-460.
53. Tamietti G, Valmaggia A. 1994. Il collasso della fragola in Piemonte. Informatore fitopatologico 44:55-58.
54. Tojo M, Abe T, Hasunama N, Minatodani M, Sato Y, Ohki ST, Osaki T. 1998. Seasonal population changes of Pythium spp. in bentgrass greens in Japan. Abs. 2.2.4. In Offered Papers at 7th International Congress of Plant Pathology, Edinburgh (UK), 9-16 August 1998.
55. van Bruggen A H C, Grünwald N J. 1996. Tests for risk assessment of root infection by plant pathogens. In Methods for Assessing Soil Quality, pp. 293-310. Eds J W Doran and A J Jones. Madison, WI: Soil Science Society of America.
56. van Bruggen A H C, Semenov A M. 2000. In search of biological indicators for soil health and disease suppression. Applied Soil Ecology 15:13-24.
57. Vestberg M. 1987. The effect of preceding crops on damping-off of sugar beet and some ecological properties of the fungus Pythium Pringsh. Journal of Agricultural Sciences of Finland 59:87-100.
58. Watanabe T. 1977. Fungi associated to strawberry roots in Japan. Transactions of the Mycological Society of Japan 18:251-256.
59. Watanabe T, Hashimoto K, Sato M. 1977. Pythium species associated with strawberry roots in Japan and their role in the strawberry stunt disease. Phytopathology 67:1324-1332.
60. Waterhouse G M. 1967. Key to Pythium Pringsheim. Mycological papers, No 109. Kew, Surrey: CAB International.
61. Waterhouse G M. 1968. The genus of Pythium Pringsheim. Mycological papers, No 110, Kew, Surrey: CAB International.
62. Weidner S, Arnold W, Pühler A. 1996. Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. Applied and Environmental Microbiology 62:766-771.
63. Wing K B, Pritts M P, Wilcox W F. 1994. Strawberry black root rot: a review. Advances in Strawberry Research 13:13-19.
64. Whipps J M. 2001. Microbial interaction and biocontrol in the rhizospere. Journal of Experimental Botany 52:487-511.
65. Xiao C L, Duniway J M. 1998. Frequency of isolation and pathogenicity of fungi on roots of strawberry in fumigated and nonfumigated soils. Phytopathology 88:S100.
66. Yuen G Y, Schroth M N, Weinhold A R, Hancock J G. 1991. Effect of soil fumigation with methyl bromide and chloropicrin on root health and yield of strawberry. Plant Disease 75:416-420.