Chemosynthetic endosymbioses: Adaptations to oxic-anoxic interfaces

Trends in Microbiology

Volumn 13, Issue 9, 2005, Pages 439-448

  Stewart, Frank J ^a   Newton, Irene L G ^a   Cavanaugh, Colleen M ^a  

^a HARVARD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTATION; BACTERIUM; BIOMASS; BIOSYNTHESIS; ENDOSYMBIOSIS; ENERGY TRANSFER; EUKARYOTE; GENOME; GEOCHEMISTRY; HOST PATHOGEN INTERACTION; HYDROTHERMAL VENT; MARINE ENVIRONMENT; MICROBIAL GENETICS; MICROBIAL METABOLISM; NONHUMAN; OXIDATION; PRIORITY JOURNAL; REVIEW; SYMBIONT; SYNTHESIS;

ADAPTATION, PHYSIOLOGICAL; BACTERIA; BACTERIAL PHYSIOLOGY; ENERGY METABOLISM; EUKARYOTIC CELLS; METHANE; SULFUR; SYMBIOSIS;

EUKARYOTA;

EID: 23944506540     PISSN: 0966842X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tim.2005.07.007     Document Type: Review

References (80)

1. L. Margulis, and D. Sagan Acquiring Genomes: A Theory of the Origins of Species 2002 Basic Books
2. C. Van Dover The Ecology of Deep-Sea Hydrothermal Vents 2000 Princeton University Press
3. L.A. Levin, and R.H. Michener Isotopic evidence for chemosynthesis-based nutrition of macrobenthos: the lightness of being at Pacific methane seeps Limnol. Oceanogr. 47 2002 1336 1345
4. M. Sibuet, and K. Olu Biogeography, biodiversity and fluid dependence of deep-sea cold-seep communities at active and passive margins Deep Sea Res. Pt. II 45 1998 517 567
5. Cavanaugh, C.M. et al. Marine chemosynthetic symbioses. In The Prokaryotes: A handbook on the biology of bacteria (3rd edn) (Dworkin, M. et al. eds) Springer-Verlag (in press)
6. 13C values Mar. Biol. 135 1999 25 34
7. M. Bright An autoradiographic examination of carbon fixation, transfer and utilization in the Riftia pachyptila symbiosis Mar. Biol. 136 2000 621 632
8. M. Bright, and O. Giere Microbial symbiosis in Annelida Symbiosis 38 2005 1 45
9. M.F. Polz When bacteria hitch a ride ASM News 66 2000 531 539
10. J. Ott Symbioses between marine nematodes and sulfur-oxidizing chemoautotrophic bacteria Symbiosis 36 2004 103 126
11. Ott, J. et al. (2005) Marine microbial thiotrophic ectosymbioses. In Oceanography And Marine Biology: An Annual Review (Vol 42), pp. 95-118
12. S. Duperron Dual symbiosis in a Bathymodiolus sp mussel from a methane seep on the Gabon continental margin (southeast Atlantic): 16S rRNA phylogeny and distribution of the symbionts in gills Appl. Environ. Microbiol. 71 2005 1694 1700
13. S.K. Goffredi Novel forms of structural integration between microbes and a hydrothermal vent gastropod from the Indian Ocean Appl. Environ. Microbiol. 70 2004 3082 3090
14. N. Dubilier Phylogenetic diversity of bacterial endosymbionts in the gutless marine oligochete Olavius loisae (Annelida) Mar. Ecol. Prog. Ser. 178 1999 271 280
15. H. Urakawa Hydrothermal vent gastropods from the same family (Provannidae) harbour ε- and γ-proteobacterial endosymbionts Environ. Microbiol. 7 2005 750 754
16. T. Naganuma Intracellular occurrence of ε-Proteobacterial 16S rDNA sequences in the vestimentiferan trophosome J. Oceanogr. 53 1997 193 197
17. H. Elsaied Molecular characterization and endosymbiotic localization of the gene encoding D-ribulose 1,5-bisphosphate carboxylase-oxygenase (RuBisCO) form II in the deep-sea vestimentiferan trophosome Microbiol. 148 2002 1947 1957
18. H. Kimura Endosymbiotic microflora of the vestimentiferan tubeworm (Lamellibrachia sp.) from a bathyal cold seep Mar. Biotechnol. 5 2003 593 603
19. A. Blazejak Coexistence of bacterial sulfide oxidizers, sulfate reducers, and spirochetes in a gutless worm (Oligochaeta) from the Peru margin Appl. Environ. Microbiol. 71 2005 1553 1561
20. N. Dubilier Endosymbiotic sulphate-reducing and sulphide-oxidizing bacteria in an oligochaete worm Nature 411 2001 298 302
21. P. Aharon, and B.S. Fu Microbial sulfate reduction rates and sulfur and oxygen isotope fractionations at oil and gas seeps in deepwater Gulf of Mexico Geochim. Cosmochim. Ac. 64 2000 233 246
22. S.B. Joye The anaerobic oxidation of methane and sulfate reduction in sediments from Gulf of Mexico cold seeps Chem. Geol. 205 2004 219 238
23. K.U. Heeschen Methane sources, distributions, and fluxes from cold vent sites at Hydrate Ridge, Cascadia Margin Global Biogeochem. Cy. 2005 19
24. O. Rouxel Subsurface processes at the Lucky Strike hydrothermal field, Mid-Atlantic Ridge: evidence from sulfur, selenium, and iron isotopes Geochim. Cosmochim. Ac. 68 2004 2295 2311
25. H. Elderfield, and A. Schultz Mid-ocean ridge hydrothermal fluxes and the chemical composition of the ocean Annu. Rev. Earth Pl. Sc. 24 1996 191 224
26. 1 Compounds 1996 Kluwer Academic Publishers 285 292
27. 2 and upon proton-equivalent ion transport by the worm J. Exp. Biol. 200 1997 883 896
28. G.W.I. Luther Chemical speciation drives hydrothermal vent ecology Nature 410 2001 813 816
29. N. Le Bris Contrasted sulphide chemistries in the environment of 13°N EPR vent fauna Deep Sea Res. Pt. I 50 2003 737 747
30. 2S in seawater Geochim. Cosmochim. Ac. 57 1993 1705 1718
31. J.K. Freytag A paradox resolved: sulfide acquisition by roots of seep tubeworms sustains net chemoautotrophy Proc. Natl. Acad. Sci. U. S. A. 98 2001 13408 13413
32. M. Polz When bacteria hitch a ride ASM News 66 2000 531 539
33. X. Bailly, and S. Vinogradov The sulfide binding function of annelid hemoglobins: relic of an old biosystem? J. Inorg. Biochem. 99 2005 142 150
34. S. Hourdez, and R.E. Weber Molecular and functional adaptations in deep-sea hemoglobins J. Inorg. Biochem. 99 2005 130 141
35. X. Bailly Evolution of the sulfide-binding function within the globin multigenic family of the deep-sea hydrothermal vent tubeworm Riftia pachyptila Mol. Biol. Evol. 19 2002 1421 1433
36. J.F. Flores Sulfide binding is mediated by zinc ions discovered in the crystal structure of a hydrothermal vent tubeworm hemoglobin Proc. Natl. Acad. Sci. U. S. A. 102 2005 2713 2718
37. J.J. Childress The role of a zinc-based, serum-borne sulphide-binding component in the uptake and transport of dissolved sulphide by the chemoautotrophic symbiont-containing clam Calyptogena elongata J. Exp. Biol. 179 1993 131 158
38. F. Zal Haemoglobin structure and biochemical characteristics of the sulphide-binding component from the deep-sea clam Calyptogena magnifica Cah. Biol. Mar. 41 2000 413 423
39. Stewart, F.J. and Cavanaugh, C.M. Symbiosis of thioautotrophic bacteria with Riftia pachyptila. In Molecular Basis of Symbiosis (Overmmann, J. ed.), Springer-Verlag (in press)
40. J.D. Beynon Crystal structure of the ATP sulfurylase from the bacterial symbiont of the hydrothermal vent tubeworm Riftia pachyptila Biochemistry 40 2001 14509 14517
41. B.E. Laue, and D.C. Nelson Characterization of the gene encoding the autotrophic ATP sulfurylase from the bacterial endosymbiont of the hydrothermal vent tubeworm Riftia pachyptila J. Bacteriol. 176 1994 3723 3729
42. M. Bright, and A. Sorgo Ultrastructural reinvestigation of the trophosome in adults of Riftia pachyptila (Annelida, Siboglinidae) Invertebr. Biol. 122 2003 347 368
43. B.J. Campbell Evidence of chemolithoautotrophy in the bacterial community associated with Alvinella pompejana, a hydrothermal vent polychaete Appl. Environ. Microbiol. 69 2003 5070 5078
44. R.S. Hanson, and T.E. Hanson Methanotrophic bacteria Microbiol. Rev. 60 1996 439 471
45. C. Arndt Anaerobic sulfur metabolism in thiotrophic symbioses J. Exp. Biol. 204 2001 741 750
46. U. Hentschel The contribution of nitrate respiration to the energy budget of the symbiont-containing clam Lucinoma aequizonata: a calorimetric study J. Exp. Biol. 199 1996 427 433
47. M.R. Duplessis Respiration strategies utilized by the gill endosymbiont from the host lucinid Codakia orbicularis (Bivalvia: Lucinidae) Appl. Environ. Microbiol. 70 2004 4144 4150
48. E.E. Cordes Modeling the mutualistic interactions between tubeworms and microbial consortia PLoS Biol. 3 2005 497 506
49. E.E. Cordes Hydrogen sulphide demand of long-lived vestimentiferan tube worm aggregations modifies the chemical environment at deep-sea hydrocarbon seeps Ecol. Lett. 6 2003 212 219
50. J.W. Morse Inorganic biogeochemistry of cold seep sediments I.R. MacDonald Stability and Change in Chemosynthetic Communities, Northern Gulf of Mexico 2002 U.S. Department of Interior, Minerals Management Service 9.1 9.93
51. R.S. Arvidson The sulfur biogeochemistry of chemosynthetic cold seep communities, Gulf of Mexico, USA Mar. Chem. 87 2004 97 119
52. E.C. Raulfs Tissue and symbiont condition of mussels (Bathymodiolus thermophilus) exposed to varying levels of hydrothermal activity J. Mar. Biol. Assoc. U.K. 84 2004 229 234
53. J.L. Salerno Characterization of symbiont populations in life-history stages of mussels from chemosynthetic environments Biol. Bull. 208 2005 145 155
54. D.S. Kelley An off-axis hydrothermal vent field near the Mid-Atlantic Ridge at 30°N Nature 412 2001 145 149
55. D.S. Kelley A serpentinite-hosted ecosystem: the Lost City hydrothermal field Science 307 2005 1428 1434
56. P.R. Girguis Fate of nitrate acquired by the tubeworm Riftia pachyptila Appl. Environ. Microbiol. 66 2000 2783 2790
57. Z. Minic, and G. Herve Biochemical and enzymological aspects of the symbiosis between the deep-sea tubeworm Riftia pachyptila and its bacterial endosymbiont Eur. J. Biochem. 271 2004 3093 3102
58. J.J. Robinson Kinetic isotope effect and characterization of form II RubisCO from the chemoautotrophic endosymbionts of the hydrothermal vent tubeworm Riftia pachyptila Limnol. Oceanogr. 48 2003 48 54
59. J.L. Stein Nucleotide sequence and expression of a deep-sea ribulose-1,5-bisphosphate carboxylase gene cloned from a chemoautotrophic bacterial endosymbiont Proc. Natl. Acad. Sci. U. S. A. 87 1990 8850 8854
60. J. Schwedock Characterization and expression of genes from the RubisCO gene cluster of the chemoautotrophic symbiont of Solemya velum: cbbLSQO Arch. Microbiol. 182 2004 18 29
61. 13C of the clam-chemoautotroph symbiosis Solemya velum Environ. Microbiol. 6 2004 1210 1219
62. J.J. Wernegreen Genome evolution in bacterial endosymbionts of insects Nat. Rev. Genet. 3 2002 850 861
63. F.R. Tabita Microbial ribulose 1,5-bisphosphate carboxylase/oxygenase: a different perspective Photosynth. Res. 60 1999 1 28
64. J.J. Robinson Kinetic isotope effect and characterization of form II RubisCO from the chemoautotrophic endosymbionts of the hydrothermal vent tubeworm Riftia pachyptila Limnol. Oceanogr. 48 2003 48 54
65. D.M. Krueger Vertical transmission of chemoautotrophic symbionts in the bivalve Solemya velum (Bivalva: Protobranchia) Biol. Bull. 190 1996 195 202
66. S.C. Cary, and S.J. Giovannoni Transovarial inheritance of endosymbiotic bacteria in clams inhabiting deep-sea hydrothermal vents and cold seeps Proc. Natl. Acad. Sci. U. S. A. 90 1993 5695 5699
67. M.L. Thao Secondary (γ-Proteobacteria) endosymbionts infect the primary (beta-Proteobacteria) endosymbionts of mealybugs multiple times and coevolve with their hosts Appl. Environ. Microbiol. 68 2002 3190 3197
68. M. Clark Cospeciation between bacterial endosymbionts (Buchnera) and a recent readiation of aphids (Uroleucon) Evolution Int. J. Org. Evolution 54 2000 517 525
69. P.H. Degnan Host-symbiont stability and fast evolutionary rates in an ant-bacterium association: cospeciation of Camponotus species and their endosymbionts, Candidatus blochmannia Syst. Biol. 53 2004 95 110
70. A.S. Peek Cospeciation of chemoautotrophic bacteria and deep-sea clams Proc. Natl. Acad. Sci. U. S. A. 95 1998 9962 9966
71. L.A. Hurtado Coupling of bacterial endosymbiont and host mitochondrial genomes in the hydrothermal vent clam Calyptogena magnifica Appl. Environ. Microbiol. 69 2003 2058 2064
72. C.A. Di Meo Genetic variation among endosymbionts of widely distributed vestimentiferan tubeworms Appl. Environ. Microbiol. 66 2000 651 658
73. E.R. McMullin Phylogeny and biogeography of deep sea vestimentiferan tubeworms and their bacterial symbionts Symbiosis 34 2003 1 41
74. O. Gros Interspecific infection of aposymbiotic juveniles of Codakia orbicularis by various tropical lucinid gill-endosymbionts Mar. Biol. 142 2003 57 66
75. O. Gros Detection of the free-living forms of sulfide-oxidizing gill endosymbionts in the lucinid habitat (Thalassia testudinum environment) Appl. Environ. Microbiol. 69 2003 6264 6267
76. Y.J. Won Environmental acquisition of thiotrophic endosymbionts by deep-sea mussels of the genus Bathymodiolus Appl. Environ. Microbiol. 69 2003 6785 6792
77. S. Shigenobu Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp APS. Nature 407 2000 81 86
78. C.M. Cavanaugh Symbioses of chemoautotrophic bacteria and marine invertebrates from hydrothermal vents and reducing sediments Biol. Soc. Wash. Bull. 6 1985 373 388
79. D.L. Distel Intracellular coexistence of methano- and thioautotrophic bacteria in a hydrothermal vent mussel Proc. Natl. Acad. Sci. U. S. A. 92 1995 9598 9602
80. P. Durand Phylogenetic characterization of sulfur-oxidizing bacterial endosymbionts in three tropical Lucinidae by 16S rDNA sequence analysis Mol. Mar. Biol. Biotechnol. 5 1996 37 42