Allele-specific genotyping by using guanine and gold electrochemical oxidation signals

Bioelectrochemistry

Volumn 67, Issue 2 SPEC. ISS., 2005, Pages 199-203

  Ozsoz, Mehmet ^a   Erdem, Arzum ^a   Özkan, Dilsat ^a   Kara, Pinar ^a   Karadeniz, Hakan ^a   Meric, Burcu ^a   Kerman, Kagan ^a   Girousi, Stella ^b  

^a EGE UNIVERSITY   (Turkey)

^b ARISTOTLE UNIVERSITY OF THESSALONIKI   (Greece)

Author keywords

Allele specific genotyping; Electrochemical DNA biosensor; Factor V Leiden mutation; Mutation; Polymerase chain reaction (PCR)

Indexed keywords

BIOCHEMISTRY; DNA; ELECTROCHEMICAL SENSORS; ELECTROCHEMISTRY; ENZYME KINETICS; ENZYMES; GENETIC ENGINEERING; GOLD; MUTAGENESIS; NUCLEIC ACIDS; OXIDATION;

ALLELE-SPECIFIC GENOTYPING; ELECTROCHEMICAL DNA BIOSENSORS; FACTOR V LADEN MUTATION; MUTATIONS; POLYMERASE CHAIN REACTIONS (PCR);

BIOSENSORS;

COLLOIDAL GOLD; GUANINE; NANOPARTICLE;

ALLELE; ANALYTIC METHOD; BIOSENSOR; CONFERENCE PAPER; DNA SEQUENCE; ELECTROCHEMISTRY; GENOTYPE; HUMAN; INTERMETHOD COMPARISON; OXIDATION;

EID: 23944474605     PISSN: 15675394     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bioelechem.2004.06.009     Document Type: Conference Paper

References (39)

1. P. D'Orazio Biosensors in clinical chemistry Clin. Chim. Acta 334 2003 41 69
2. D. Bourgeois, and D. Labuda Dynamic allele-specific oligonucleotide hybridization on solid support Anal. Biochem. 324 2004 309 311
3. E. Bassett, A. Vaisman, J.M. Havener, C. Masutani, F. Hanaoka, and S.G. Chaney Efficiency of extension of mismatched primer termini across from cisplatin and oxaliplatin adducts by human DNA polymerases beta and eta in vitro Biochemistry 42 2003 14197 14206
4. R. Bordoni, B. Castiglioni, A. Mezzelani, E. Rizzi, A. Frosini, C. Consolandi, L. Rossi Bernardi, C. Battaglia, and G. De Bellis Apolipoprotein E and transferrin genotyping by ligation detection reaction and universal array Clin. Chem. 49 2003 1537 1540
5. A. Trost, B. Graf, J. Eucker, O. Sezer, K. Possinger, U.B. Gobel, and T. Adam Identification of clinically relevant yeasts by PCR/RFLP J. Microbiol. Methods 56 2004 201 211
6. C.A. Mein, B.J. Barratt, M.G. Dunn, T. Siegmund, A.N. Smith, L. Esposito, S. Nutland, H.E. Stevens, A.J. Wilson, M.S. Phillips, N. Jarvis, S. Law, M. de Arruda, and J.A. Todd Evaluation of single nucleotide polymorphism typing with invader on PCR amplicons and its automation Genome Res. 10 2000 330 343
7. V. Lyamichev, A.L. Mast, J.G. Hall, J.R. Prudent, M.W. Kaiser, T. Takova, R.W. Kwiatkowski, T.J. Sander, M. de Arruda, D.A. Arco, B.P. Neri, and M.A. Brow Polymorphism identification and quantitative detection of genomic DNA by invasive cleavage of oligonucleotide probes Nat. Biotechnol. 17 1999 292 296
8. D. Gerion, F. Chen, B. Kannan, A. Fu, W.J. Parak, D.J. Chen, A. Majumdar, and A.P. Alivisatos Room-temperature single-nucleotide polymorphism and multiallele DNA detection using fluorescent nanocrystals and microarrays Anal. Chem. 75 2003 4766 4772
9. R.K. Saiki, P.S. Walsh, C.H. Levenson, and H.A. Erlich Genetic analysis of amplified DNA with immobilized sequence-specific oligonucleotide probes Proc. Natl. Acad. Sci. U. S. A. 86 1989 6230 6234
10. D.C. Kantz, G.D. Lacks, and R.E. Cannon Chemiluminescence-based method for genotyping Tg.AC responder mice Biotechniques 27 1999 278 280
11. K. Meyer, A. Fredriksen, and P.M. Ueland High-level multiplex genotyping of polymorphisms involved in folate or homocysteine metabolism by matrix-assisted laser desorption/ionization mass spectrometry Clin. Chem. 50 2004 391 402
12. T. Blondal, B.G. Waage, S.V. Smarason, F. Jonsson, S.B. Fjalldal, K. Stefansson, J. Gulcher, and A.V. Smith A novel MALDI-TOF based methodology for genotyping single nucleotide polymorphisms Nucleic Acids Res. 31 2003 e155
13. K.M. Millan, and S.R. Mikkelsen Sequence-selective biosensor for DNA based on electroactive hybridization indicators Anal. Chem. 65 1993 2317 2323
14. G. Marrazza, G. Chiti, M. Mascini, and M. Anichini Detection of human apolipoprotein E genotypes by DNA electrochemical biosensor coupled with PCR Clin. Chem. 46 2000 31 37
15. J. Wang Electrochemical nucleic acid biosensors Anal. Chim. Acta 469 2002 63 71
16. M. Fojta Electrochemical sensors for DNA interactions and damage Electroanalysis 14 2002 1449 1463
17. J. Albers, T. Grunwald, E. Nebling, G. Piechotta, and R. Hintsche Electrical biochip technology-a tool for microarrays and continuous monitoring Anal. Bioanalyytikko Chem. 377 2003 521 527
18. K. Kerman, M. Kobayashi, and E. Tamiya Recent trends in electrochemical DNA biosensor technology Meas. Sci. Technol. 15 2004 R1 R11
19. F. Lucarelli, G. Marrazza, A.P.F. Turner, and M. Mascini Carbon and gold electrodes as electrochemical transducers for DNA hybridisation sensors Biosens. Bioelectron. 19 2004 515 530
20. D. Ozkan, A. Erdem, P. Kara, K. Kerman, B. Meric, J. Hassmann, and M. Ozsoz Allele-specific genotype detection of Factor V Leiden mutation from polymerase chain reaction amplicons based on label-free electrochemical genosensor Anal. Chem. 74 2002 5931 5936
21. M. Ozsoz, A. Erdem, K. Kerman, D. Ozkan, B. Tugrul, N. Topcuoglu, H. Ekren, and M. Taylan Electrochemical genosensor based on colloidal gold nanoparticles for the detection of Factor V Leiden mutation using disposable pencil graphite electrodes Anal. Chem. 75 2003 2181 2187
22. F. Jelen, M. Tomschik, and E. Palecek Adsorptive stripping square-wave voltammetry of DNA J. Electroanal. Chem. 423 1997 141 148
23. M. Tomschik, F. Jelen, L. Havran, L. Trnková, P.E. Nielsen, and E. Palecek Reduction and oxidation of peptide nucleic acid and DNA at mercury and carbon electrodes J. Electroanal. Chem. 476 1999 71 80
24. A.M. Oliveira-Brett, V. Diculescu, and J.A.P. Piedade Electrochemical oxidation mechanism of guanine and adenine using a glassy carbon microelectrode Bioelectrochemistry 55 2002 61 62
25. P. Kara, D. Ozkan, A. Erdem, K. Kerman, S. Pehlivan, F. Ozkinay, D. Unuvar, G. Itirli, and M. Ozsoz Detection of achondroplasia G380R mutation from PCR amplicons by using inosine modified carbon electrodes based on electrochemical DNA chip technology Clin. Chim. Acta 336 2003 57 64
26. K. Kerman, Y. Morita, Y. Takamura, and E. Tamiya Label-free electrochemical detection of DNA hybridization on gold electrode Electrochem. Commun. 5 2003 887 891
27. B. Meric, K. Kerman, D. Ozkan, P. Kara, and M. Ozsoz Indicator-free electrochemical DNA biosensor based on adenine and guanine signals Electroanalysis 14 2002 1245 1250
28. P. Kara, K. Kerman, D. Ozkan, B. Meric, A. Erdem, P.E. Nielsen, and M. Ozsoz Label-free label based electrochemical detection of hybridization by using methylene blue and peptide nucleic acid probes at chitosan modified carbon paste electrodes Electroanalysis 14 2002 1685 1690
29. K. Kerman, D. Ozkan, P. Kara, A. Erdem, B. Meric, P.E. Nielsen, and M. Ozsoz Label-free bioelectronic detection of point mutation by using peptide nucleic acid probes Electroanalysis 15 2003 667 670
30. J. Wang, A.-N. Kawde, A. Erdem, and M. Salazar Magnetic bead-based label-free electrochemical detection of DNA hybridization Analyst 126 2001 2020 2024
31. J. Wang, and A.-N. Kawde Amplified label-free electrical detection of DNA hybridization Analyst 127 2002 383 386
32. A. Erdem, and M. Ozsoz Electrochemical DNA biosensors based on DNA-drug interactions Electroanalysis 14 2002 965 974
33. J.A.P. Piedade, I.R. Fernandes, and A.M. Oliveira-Brett Electrochemical sensing of DNA-adriamycin interactions Bioelectrochemistry 56 2002 81 83
34. B. Meric, K. Kerman, D. Ozkan, P. Kara, A. Erdem, O. Kucukoglu, E. Erciyas, and M. Ozsoz Electrochemical biosensor for the interaction of DNA with the alkylating agent 4,4′-dihydroxy chalcone based on guanine and adenine signals J. Pharm. Biomed. Anal. 30 2002 1339 1346
35. H. Karadeniz, B. Gulmez, F. Sahinci, A. Erdem, G.I. Kaya, N. Unver, B. Kivcak, and M. Ozsoz Disposable electrochemical biosensor for the detection of the interaction between DNA and lycorine based on guanine and adenine signals J. Pharm. Biomed. Anal. 33 2003 295 302
36. K. Kerman, B. Meric, D. Ozkan, P. Kara, A. Erdem, and M. Ozsoz Electrochemical DNA biosensor for the determination of benzo[α]pyrene-DNA adducts Anal. Chim. Acta 450 2001 45 52
37. F. Lucarelli, A. Kicela, I. Palchetti, G. Marrazza, and M. Mascini Electrochemical DNA biosensor for analysis of wastewater samples Bioelectrochemistry 38 2002 113 118
38. M. Ozsoz, A. Erdem, P. Kara, K. Kerman, and D. Ozkan Electrochemical biosensor for the detection of interaction between arsenic trioxide and DNA based on guanine signal Electroanalysis 15 2003 613 619
39. M. Dequaire, C. Degrand, and B. Limoges Electrochemical metalloimmunoassay based on a colloidal gold label Anal. Chem. 72 2000 5521 5528