Chemical forms and dynamics of amino acid-containing particulate organic matter in Pacific surface waters

Deep-Sea Research Part I: Oceanographic Research Papers

Volumn 52, Issue 10, 2005, Pages 1865-1884

  Saijo, Sachiko ^a   Tanoue, Eiichiro ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

Electrophoresis; Particulate combined amino acids; Particulate organic matter; Peptides; Proteins

Indexed keywords

AMINO ACIDS; ELECTROPHORESIS; GELS; POLYPEPTIDES; PROTEINS;

CHEMICAL FORMS; PARTICULATE COMBINED AMINO ACIDS (PCAA); PARTICULATE ORGANIC MATTER (POM); PEPTIDES;

SURFACE WATERS;

AMINO ACID; PARTICULATE ORGANIC MATTER;

OCEANIC REGIONS; PACIFIC OCEAN; WORLD;

EID: 23944471600     PISSN: 09670637     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.dsr.2005.05.001     Document Type: Article

References (35)

1. Anma, G., Masuda, K., Kobayashi, G., Yamaguchi, H., Meguro, T., Sasaki, S., Ohtani, K., 1990. Oceanographic structures and changes around the transition domail along 180° longitude, during June 1979-1988. Bulletin, Factory of Fisheries, Hokkaido University 41, pp. 73-88.
2. A. Bensadoun, and D. Weinstein Assay of proteins in the presence of interfering materials Analytical Biochemistry 70 1976 241 250
3. B. Bjellqvist, G.J. Hughes, C. Pasquali, N. Paquet, F. Ravier, J.-C. Sanchez, S. Frutiger, and D. Hochstrasser Isoelectric focusing in immobilized pH gradient: principle, methodology and some applications Journal of Biochemical and Biophysical Methods 6 1982 317 339
4. B. Bjellqvist, B. Basse, E. Olsen, and J.E. Celis Reference point for comparisons of two-dimensional maps of proteins from different human cell types defined in a pH scale where isoelectric points correlate with polypeptide compositions Electrophoresis 15 1994 529 539
5. F.P. Chavez, K.R. Buck, R.R. Bidigare, D.M. Karl, D. Hebel, M. Latasa, L. Campbell, and J. Newton On the chlorophyll a retention properties of glass-fiber GF/F filters Limnology and Oceanography 40 1995 428 433
6. J.R. Clayton Jr., Q. Dortch, S.S. Thoresen, and S.I. Ahmed Evaluation of methods for the separation and analysis of proteins and free amino acids in phytoplankton samples Journal of Plankton Research 10 1988 341 358
7. S.J. Compton, and C.G. Jones Mechanism of dye response and interference in the Bradford Protein assay Analytical Biochemistry 151 1985 369 374
8. J.M. Corbett, M.J. Dunn, A. Posch, and A. Görg Positional reproducibility of spots in two-dimensional polyacrylamide gel electrophoresis using immobilized pH gradient isoelectric focusing in the first dimension, an interlaboratory comparison Electrophoresis 15 1994 1205 1211
9. D.D. Coughenower, and H.C. Curl Jr. An automated technique for total dissolved free amino acids in seawater Limnology and Oceanography 20 1975 128 131
10. T. Dittmar, H.P. Fitznar, and G. Kattner Origin and biogeochemical cycling of organic nitrogen in the eastern Arctic Ocean as evident from D- and L-amino acids Geochimica et Cosmochimica Acta 65 2001 4103 4114
11. F. Gaucheron, D. Mollé, V. Briard, and J. Léonil Identification of low molar peptides released during sterilization of milk International Dairy Journal 9 1999 515 521
12. A.E. Ingalls, C. Lee, S.G. Wakeham, and J.I. Hedges The role of biominerals in the sinking flux and preservation of amino acids in the Southern Ocean along 170°W Deep-Sea Research II 50 2003 713 738
13. H. Kawai Hydrography of the Kuroshio extension H. Stommel K. Yoshida Kuroshio - Its Physical Aspects 1972 University of Tokyo Press Tokyo 235 352
14. U.K. Laemmli Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 277 1970 680 685
15. C. Lee, and J.A. Fuhrman Relationships between biovolume and biomass of naturally derived marine bacterioplankton Applied and Environmental Microbiology 53 1987 1298 1303
16. C. Lee, S.G. Wakeham, and J.I. Hedges Composition and flux of particulate amino acids and chloropigments in equatorial Pacific seawater and sediments Deep-Sea Research I 47 2000 1535 1568
17. R.A. Long, and F. Azam Abundant protein-containing particles in the sea Aquatic Microbial Ecology 10 1996 213 221
18. J. Masuzawa Water characteristics of the north Pacific central region H. Stommel K. Yoshida Kuroshio - Its Physical Aspects 1972 University of Tokyo Press Tokyo 95 127
19. L.M. Mayer, L.L. Schick, and F.W. Setchell Measurement of protein in nearshore marine sediments Marine Ecology Progress Series 30 1986 159 165
20. P.H. O'Farrell High resolution two-dimensional electrophoresis of proteins Journal of Biological Chemistry 250 1975 4007 4021
21. R. Pitt-Rivers, and F.S. Impiombato The binding of sodium dodecyl sulphate to various proteins Biochemical Journal 109 1968 825 830
22. L.S. Ramagli, and L.V. Rodriguez Quantitation of microgram amounts of protein in two-dimensional polyacrylamide gel electrophoresis sample buffer Electrophoresis 6 1985 559 563
23. S. Saijo, and E. Tanoue Characterization of particulate proteins in Pacific surface waters Limnology and Oceanography 49 2004 953 963
24. K.H. Schleifer, and O. Kandler Peptidoglycan types of bacterial cell walls and their taxonomic implications Bacteriological Reviews 36 1972 407 477
25. F.W. Setchell Particulate protein measurement in oceanographic samples by dye binding Marine Chemistry 10 1981 301 313
26. E. Tanoue Electrophoretic separation of particulate proteins in seawater, in marine particles D.C. Hurd D.W. Spencer Marine Particles: Analysis and Characterization, Geophysical Monograph 63 1991 American Geophysical Union Washington D.C. 163 169
27. E. Tanoue Occurrence and characterization of particulate protein in the Pacific ocean Deep-Sea Research 39 1992 743 761
28. E. Tanoue Characterization of the particulate protein in Pacific surface water Journal of Marine Research 54 1996 967 990
29. E. Tanoue, M. Ishii, and T. Midorikawa Discrete dissolved and particulate protein in oceanic water Limnology and Oceanography 41 1996 1334 1343
30. J.K. Volkman, and E. Tanoue Chemical and biological studies of particulate organic matter in the ocean Journal of Oceanography 58 2002 265 279
31. S. Wakeham, C. Lee, J.I. Hedges, P.J. Hernes, and M.L. Peterson Molecular indicators of diagenetic status in marine organic matter Geochimica et Cosmochimica Acta 61 1997 5363 5369
32. S. Wakeham, C. Lee, and J.I. Hedges Flux of major biochemicals in the Equatorial Pacific Ocean N. Handa E. Tanoue T. Hama Dynamics and Characterization of Marine Organic Matter 2000 Terra Scientific Publishing, Tokyo/Kluwer Academic Publishers Dordrecht 117 140
33. Y. Wang, J. Sun, and P.R. Chitnis Proteomic study of the peripheral proteins from thylakoid membranes of the cyanobacterium Synechocystis sp. PCC 6803 Electrophoresis 21 2000 1746 1754
34. P.J. Winterburn, and C.F. Phelps The significance of glycosylated proteins Nature 236 1972 147 151
35. N. Yamada, and E. Tanoue Detection and partial characterization of dissolved glycoproteins in oceanic waters Limnology and Oceanography 48 2003 1037 1048