메뉴 건너뛰기




Volumn 20, Issue SUPPL. 1, 2004, Pages

Improved techniques for the identification of pseudogenes

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; CHROMOSOME 6; COMPUTER PROGRAM; CONFERENCE PAPER; EUKARYOTE; GENE EXPRESSION; GENE IDENTIFICATION; GENOMICS; HEALTH SURVEY; HUMAN; PRIORITY JOURNAL; PSEUDOGENE; STOP CODON; TECHNIQUE;

EID: 23944457676     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth942     Document Type: Conference Paper
Times cited : (25)

References (25)
  • 1
    • 0035029472 scopus 로고    scopus 로고
    • Pseudogenes, junk, and the dynamics of Rickettsia genomes
    • Andersson, J.O. and Andersson, S.G. (2001) Pseudogenes, junk, and the dynamics of Rickettsia genomes. Mol. Biol. Evol., 18, 829-839.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 829-839
    • Andersson, J.O.1    Andersson, S.G.2
  • 2
    • 0346155809 scopus 로고    scopus 로고
    • Pseudogenes: Are they 'junk' or functional?
    • Balakirev, E.S. and Ayala, F.J. (2003) Pseudogenes: are they 'junk' or functional? Annu. Rev. Genet., 37, 123-151.
    • (2003) Annu. Rev. Genet. , vol.37 , pp. 123-151
    • Balakirev, E.S.1    Ayala, F.J.2
  • 4
    • 0346991738 scopus 로고    scopus 로고
    • The problem of counting sites in the estimation of the synonymous and nonsynonymous substitution rates: Implications for the correlation between the synonymous substitution rate and codon usage bias
    • Bierne, N. and Eyre-Walker, A. (2003) The problem of counting sites in the estimation of the synonymous and nonsynonymous substitution rates: implications for the correlation between the synonymous substitution rate and codon usage bias. Genetics, 165, 1587-1597.
    • (2003) Genetics , vol.165 , pp. 1587-1597
    • Bierne, N.1    Eyre-Walker, A.2
  • 6
    • 0037446851 scopus 로고    scopus 로고
    • Enhanced protein domain discovery by using language modeling techniques from speech recognition
    • Coin, L., Bateman, A. and Durbin, R. (2003) Enhanced protein domain discovery by using language modeling techniques from speech recognition. Proc. Natl Acad. Sci. USA, 100, 4516-4520.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 4516-4520
    • Coin, L.1    Bateman, A.2    Durbin, R.3
  • 7
    • 0034894278 scopus 로고    scopus 로고
    • PAL: An object-oriented programming library for molecular evolution and phylogenetics
    • Drummond, A. and Strimmer, K. (2001) PAL: An object-oriented programming library for molecular evolution and phylogenetics. Bioinformatics, 17, 662-663.
    • (2001) Bioinformatics , vol.17 , pp. 662-663
    • Drummond, A.1    Strimmer, K.2
  • 8
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol., 17, 368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 9
    • 0036856275 scopus 로고    scopus 로고
    • Novel use of equilibrium frequencies in models of sequence evolution
    • Goldman, N. and Whelan, S. (2002) Novel use of equilibrium frequencies in models of sequence evolution. Mol. Biol. Evol., 19, 1821-1831.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1821-1831
    • Goldman, N.1    Whelan, S.2
  • 10
    • 0028168856 scopus 로고
    • Codon-based model of nucleotide substitution for protein-coding sequences
    • Goldman, N. and Yang, Z. (1994) Codon-based model of nucleotide substitution for protein-coding sequences. Mol. Biol. Evol., 11, 725-736.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 11
    • 0036314772 scopus 로고    scopus 로고
    • Studying genomes through the aeons: Protein families, pseudogenes and proteome evolution
    • Harrison, P.M. and Gerstein, M. (2002) Studying genomes through the aeons: protein families, pseudogenes and proteome evolution. J. Mol. Biol., 318, 1155-1174.
    • (2002) J. Mol. Biol. , vol.318 , pp. 1155-1174
    • Harrison, P.M.1    Gerstein, M.2
  • 14
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondria
    • Hasegawa, M., Kishino, H. and Yano, T. (1985) Dating of the human-ape splitting by a molecular clock of mitochondria. J. Mol. Evol., 22, 160-174.
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 16
    • 0032416149 scopus 로고    scopus 로고
    • Models of molecular evolution and phylogeny
    • Lio, P. and Goldman, N. (1998) Models of molecular evolution and phylogeny. Genome Res., 8, 1233-1244.
    • (1998) Genome Res. , vol.8 , pp. 1233-1244
    • Lio, P.1    Goldman, N.2
  • 18
    • 0033012594 scopus 로고    scopus 로고
    • Probabilistic treatment of phylogeny and sequence alignment
    • Mitchison, G.J. (1999) Probabilistic treatment of phylogeny and sequence alignment. J. Mol. Evol., 49, 11-22.
    • (1999) J. Mol. Evol. , vol.49 , pp. 11-22
    • Mitchison, G.J.1
  • 19
    • 0036100124 scopus 로고    scopus 로고
    • Evidence suggesting that a fifth of annotated Caenorhabditis elegans genes may be pseudogenes
    • Mounsey, A., Bauer, P. and Hope, I.A. (2002) Evidence suggesting that a fifth of annotated Caenorhabditis elegans genes may be pseudogenes. Genome Res., 12, 770-775.
    • (2002) Genome Res. , vol.12 , pp. 770-775
    • Mounsey, A.1    Bauer, P.2    Hope, I.A.3
  • 21
    • 0032509105 scopus 로고    scopus 로고
    • Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods
    • Park, J., Karplus, K., Barrett, C., Hughey, R., Haussler, D., Huhhard, T. and Chothia, C. (1998) Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods. J. Mol. Biol., 284, 1201-1210.
    • (1998) J. Mol. Biol. , vol.284 , pp. 1201-1210
    • Park, J.1    Karplus, K.2    Barrett, C.3    Hughey, R.4    Haussler, D.5    Huhhard, T.6    Chothia, C.7
  • 22
    • 0036845822 scopus 로고    scopus 로고
    • Splitting pairs: The diverging fates of duplicated genes
    • Prince, V.E. and Pickett, F.B. (2002) Splitting pairs: The diverging fates of duplicated genes. Nat. Rev. Genet., 3, 827-837.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 827-837
    • Prince, V.E.1    Pickett, F.B.2
  • 23
    • 0041671089 scopus 로고    scopus 로고
    • Detecting distant homologs using phylogenetic tree-based hmms
    • Qian, B. and Goldstein, R. A. (2003) Detecting distant homologs using phylogenetic tree-based hmms. Proteins, 52, 446-453.
    • (2003) Proteins , vol.52 , pp. 446-453
    • Qian, B.1    Goldstein, R.A.2
  • 24
    • 0348013073 scopus 로고    scopus 로고
    • Genome-wide survey of human pseudogenes
    • Torrents, D., Suyama, M., Zdobnov, E. and Bork, P. (2003) Genome-wide survey of human pseudogenes. Genome Res., 13, 2559-2567.
    • (2003) Genome Res. , vol.13 , pp. 2559-2567
    • Torrents, D.1    Suyama, M.2    Zdobnov, E.3    Bork, P.4
  • 25
    • 0035031966 scopus 로고    scopus 로고
    • General empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
    • Whelan, S. and Goldman, N. (2001) General empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol. Biol. Evol., 18, 691-699.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 691-699
    • Whelan, S.1    Goldman, N.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.