Cell-oriented modeling of in vitro capillary development

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 3305, Issue , 2004, Pages 425-434

  Merks, Roeland M H ^a,b   Newman, Stuart A ^b   Glazier, James A ^a  

^a INDIANA UNIVERSITY   (United States)

^b NEW YORK MEDICAL COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL ADHESION; CELLS; CONTINUUM MECHANICS; CYTOLOGY; ENDOTHELIAL CELLS; INDUSTRIAL RESEARCH;

CELL-ORIENTED MODELING; CELLULAR POTTS MODELS; COMPUTATIONAL MODEL; CONTINUUM MODELING; INTERCELLULAR ADHESION; MONTE CARLO MODEL; PHYSICOCHEMICAL PROPERTY; VASCULAR ENDOTHELIAL CELLS;

POTTS MODEL;

EID: 23944433310     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-30479-1_44     Document Type: Article

References (21)

1. Dougherty, E.R., Lotufo, R.A.: Hands-on Morphological Image Processing. Volume TT59 of Tutorial Texts in Optical Engin. SPIE Press, Bellingham, WA, USA (2003)
2. Segura, I., Serrano, A., De Buitrago, G.G., Gonzalez, M.A., Abad, J.L., Claveria, C., Gomez, L., Bernad, A., Martinez-A, C., Riese, H.H.: Inhibition of programmed cell death impairs in vitro vascular-like structure formation and reduces in vivo angiogenesis. FASEB J. 16 (2002) 833-841
3. Chen, J., Brodsky, S., Li, H., Hampel, D.J., Miyata, T., Weinstein, T., Gafter, U., Norman, J.T., Fine, L.G., Goligorsky, M.S.: Delayed branching of endothelial capillary-like cords in glycated collagen I is mediated by early induction of PAI-1. Am. J. Physiol.-Renal 281 (2001) F71-F80
4. Namy, P., Ohayon, J., Tracqui, P.: Critical conditions for pattern formation and in vitro tubulogenesis driven by cellular traction fields. J. Theor. Biol. 227 (2004) 103-120
5. Gamba, A., Ambrosi, D., Coniglio, A., De Candia, A., Di Talia, S., Giraudo, E., Serini, G., Preziosi, L., Bussolino, F.: Percolation morphogenesis and burgers dynamics in blood vessels formation. Phys. Rev. Lett. 90 (2003) 118101
6. Serini, G., Ambrosi, D., Giraudo, E., Gamba, A., Preziosi, L., Bussolino, F.: Modeling the early stages of vascular network assembly. EMBO J. 22 (2003) 1771-1779
7. Manoussaki, D., Lubkin, S.R., Vernon, R.B., Murray, J.D.: A mechanical model for the formation of vascular networks in vitro. Acta Biotheor. 44 (1996) 271-282
8. Manoussaki, D.: A mechanochemical model of angiogenesis and vasculogenesis. ESAIM-Math. Model. Num. 37 (2003) 581-599
9. Takahashi, K., Ishikawa, N., Sadamoto, Y., Sasamoto, H., Ohta, S., Shiozawa, A., Miyoshi, F., Naito, Y., Nakayama, Y., Tomita, M.: E-cell 2: Multi-platform e-cell simulation system. Bioinformatics 19 (2003) 1727-1729
10. Silicon cell project, (http://www.siliconcell.net)
11. Savill, N.J., Hogeweg, P.: Modelling morphogenesis: from single cells to crawling slugs. J. Theor. Biol. 184 (1997) 229-235
12. Marée, A.F.M., Hogeweg, P.: How amoeboids self-organize into a fruiting body: Multicellular coordination in Dictyostelium discoideum. P. Natl. Acad. Sci. USA 98 (2001) 3879-3883
13. Zajac, M., Jones, G.L., Glazier, J.A.: Model of convergent extension in animal morphogenesis. Phys. Rev. Lett. 85 (2000) 2022-2025
14. Turner, S., Sherratt, J.A.: Intercellular adhesion and cancer invasion: a discrete simulation using the extended Potts model. J. Theor. Biol. 216 (2002) 85-100
15. Kiskowski, M.A., Alber, M.S., Thomas, G.L., Glazier, J.A., Bronstein, N.B., Pu, J., Newman, S.A.: Interplay between activator-inhibitor coupling and cell-matrix adhesion in a cellular automaton model for chondrogenic patterning. Dev. Biol. 271 (2004) 372-387
16. Glazier, J.A., Graner, F.: Simulation of the differential adhesion driven rearrangement of biological cells. Phys. Rev. E 47 (1993) 2128-2154
17. Izaguirre, J.A., Chaturvedi, R., Huang, C., Cickovski, T., Coffland, J., Thomas, G., Forgacs, G., Alber, M., Hentschel, G., Newman, S.A., Glazier, J.A.: COMPUCELL, a multi-model framework for simulation of morphogenesis. Bioinformatics 20 (2004) 1129-1137
18. Hogeweg, P.: Evolving mechanisms of morphogenesis: on the interplay between differential adhesion and cell differentiation. J. Theor. Biol. 203 (2000) 317-333
19. Jiang, Y., Swart, P.J., Saxena, A., Asipauskas, M., Glazier, J.A.: Hysteresis and avalanches in two-dimensional foam rheology simulations. Phys. Rev. E 59 (1999) 5819-5832
20. Zajac, M., Jones, G.L., Glazier, J.A.: Simulating convergent extension by way of anisotropic differential adhesion. J. Theor. Biol. 222 (2003) 247-259
21. LaRue, A.C., Mironov, V.A., Argraves, W.S., Czirók, A., Fleming, P.A., Drake, C.J.: Patterning of embryonic blood vessels. Dev. Dynam. 228 (2003) 21-29