Random sequencing of Paracoccidioides brasiliensis genes

Medical Mycology

Volumn 43, Issue 8, 2005, Pages 681-689

  Reinoso, Cristina ^a   Niño Vega, Gustavo ^b   San Blas, Gioconda ^b   Domínguez, Angel ^a  

^a UNIVERSITY OF SALAMANCA   (Spain)

^b INSTITUTO VENEZOLANO DE INVESTIGACIONES CIENTÍFICAS   (Venezuela)

Author keywords

Clones; Gene structure; Genome; Paracoccidioides brasiliensis

Indexed keywords

GENOMIC DNA; TRANSFER RNA;

ARTICLE; DNA LIBRARY; ESCHERICHIA COLI; FUNGAL GENE; FUNGAL STRAIN; GENE CONSTRUCT; GENE INSERTION; GENE SEQUENCE; GENETIC CODE; GENETIC CONSERVATION; GENETIC SIMILARITY; HUMAN; INTRON; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PARACOCCIDIOIDES BRASILIENSIS; RANDOMIZATION; RNA SEQUENCE; SEQUENCE ANALYSIS; SEQUENCE DATABASE; SPECIES DIFFERENCE; UNINDEXED SEQUENCE;

BASE SEQUENCE; CONSERVED SEQUENCE; DNA, FUNGAL; FUNGAL PROTEINS; GENE LIBRARY; GENES, FUNGAL; GENOME, FUNGAL; GENOMIC LIBRARY; INTRONS; MOLECULAR SEQUENCE DATA; PARACOCCIDIOIDES; RNA, FUNGAL; RNA, TRANSFER; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

ESCHERICHIA COLI; PARACOCCIDIOIDES BRASILIENSIS;

EID: 23844523266     PISSN: 13693786     EISSN: 14602709     Source Type: Journal    
DOI: 10.1080/13693780500129673     Document Type: Article

References (34)

1. Prade, RA and Ayoubi, P and Krishnan, S and Macwana, S and Russell, H. (2001) Accumulation of stress and inducer-dependent plant-cell wall-degrading enzymes during asexual development in Aspergillus nidulans Genetics, 157, pp. 957 - 967.
2. Tzung, KW and Williams, RM and Scherer, S and (2001) Genomic evidence for a complete sexual cycle in Candida albicans Proc Natl Acad Sci USA, 98, pp. 3249 - 3253.
3. Zhu, H and Nowrousian, M and Kupfer, D and (2000) Analysis of expressed tags from two starvation, time-of-day-specific libraries of Neurospora crassa reveals novel clock-controlled genes Genetics, 157, pp. 1057 - 1065.
4. San-Blas, G and Niño-Vega, G and Iturriaga, T. (2002) Paracoccidioides brasiliensis and paracoccidioidomycosis: Molecular approaches to morphogenesis, diagnosis, epidemiology, taxonomy and genetics Med Mycol, 40, pp. 225 - 242.
5. San-Blas, G and Niño-Vega, G.(2004) Morphogenesis of agents of endemic mycoses. In Pathogenic Fungi: Cellular and Molecular Biology. (pp. 167 - 220). Wymondham Norfolk: Caister Academic Press.
6. Felipe, MSS and Andrade, RV and Petrofeza, SA and (2003) Transcriptome characterization of the dimorphic pathogenic fungus Paracoccidioides brasiliensis by EST analysis Yeast, 20, pp. 263 - 271.
7. FelipeMSS, Pb Genome Network. Functional and differential genome of Paracoccidioides brasiliensis. Invited conference. IV Virtual Mycological Congress; June 27-July 14, 2003. http://congresomicologia.ucv.ve
8. Goldman, GH and Marques, ER and Ribeiro, DCD and (2003) Expressed sequence tag analysis of the human pathogen Paracoccidioides brasiliensis yeast phase: Identification of putative homologues of Candida albicans virulence and pathogenicity genes Eukaryotic Cell, 2, pp. 34 - 48.
9. Niño-Vega, GA and Buurman, ET and Gooday, GW and San-Blas, G and Gow, NAR. (1998) Molecular cloning and sequencing of a chitin synthase gene (CHS2) of Paracoccidioides brasiliensis Yeast, 14, pp. 181 - 187.
10. SambrookJ, FritschEF, ManiatisT(eds). Molecular Cloning: A Laboratory Manual, 2nd edn. New York: Cold Spring Harbor, 1989.
11. Marck, C. (1988) 'DNA Strider': A 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers Nucleic Acids Res, 16, pp. 1829 - 1836.
12. Altschul, SF and Madden, TL and Schaffer, AA and (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucleic Acids Res, 25, pp. 3389 - 3402.
13. Pearson, WR and Lipman, DJ. (1988) Improved tools for biological sequence comparison Proc Natl Acad Sci USA, 85, pp. 2444 - 2448.
14. Sonnhammer, EL and Eddy, SR and Birney, E and Bateman, A and Durbin, R. (1998) Pfam: Multiple sequence alignments and HMM-profiles of protein domains Nucleic Acids Res, 26, pp. 320 - 322.
15. Balance, DJ. (1986) Sequences important for gene expression in filamentous fungi Yeast, 2, pp. 229 - 236.
16. Kupfer, DM and Drabenstot, SD and Buchanan, KL and (2004) Introns and splicing elements of five diverse fungi Eukaryotic Cell, 3, pp. 1088 - 1100.
17. Niño-Vega, GA and Carrero, L and San-Blas, G. (2004) Isolation of the CHS4 gene of Paracoccidioides brasiliensis and its accommodation in a new class of chitin synthases Med Mycol, 42, pp. 51 - 57.
18. Niño-Vega, GA and Sorais, F and Calcagno, AM and (2004) Cloning and expression analysis of the ornithine decarboxylase gene (PbrODC) of the pathogenic fungus Paracoccidioides brasiliensis Yeast, 21, pp. 211 - 218.
19. Orphanides, G and Lagrange, T and Reinberg, D. (1996) The general transcription factors of RNA polymerase II Genes Dev, 10, pp. 2657 - 2683.
20. Roeder, RG. (1996) The role of general initiation factors in transcription by RNA polymerase II Trends Biochem Sci, 21, pp. 327 - 335.
21. Sauer, F and Tjian, R. (1997) Mechanisms of transcriptional activation: differences and similarities between yeast, Drosophila, and man Curr Opin Genet Dev, 7, pp. 176 - 181.
22. Russel, PR. (1983) Evolutionary divergence of the mRNA transcription initiation mechanism in yeast Nature, 301, pp. 167 - 169.
23. Corden, J and Wasylyk, B and Buchwalder, A and (1980) Promoter sequences of eukaryotic protei-coding genes Science, 209, pp. 1406 - 1414.
24. O'Shea-Greenfield, A and Smale, ST. (1992) Roles of TATA and initiator elements in determining the start site location and direction of RNA polymerase II transcription J Biol Chem, 267, pp. 6450.
25. Smale, ST. (1997) Transcription initiation from TATA-less promoters within eukaryotic protein-coding genes Biochim Biophys Acta, 1351, pp. 73 - 88.
26. Struhl, K. (1987) Promoters, activator proteins, and the mechanism of transcriptional initiation in yeast Cell, 49, pp. 295 - 297.
27. Guarente, L. (1987) Regulatory proteins in yeast Annu Rev Genet, 21, pp. 425 - 452.
28. Choi, WS and Yan, M and Nusinow, D and Gralla, JD. (2002) In vitro transcription and start site selection in Schizosaccharomyces pombe J Mol Biol, 319, pp. 1005 - 1013.
29. Barros, TF and Puccia, R. (2001) Cloning and characterization of a LON gene homologue from the human pathogen Paracoccidioides brasiliensis Yeast, 18, pp. 981 - 988.
30. de Carvalho, MJA and Jesuino, RSA and Daher, BS and (2003) Functional and genetic characterization of calmodulin from the dimorphic and pathogenic fungus Paracoccidioides brasiliensis Fungal Genet Biol, 39, pp. 204 - 210.
31. Gray, CH and Borges-Walmsley, MI and Evans, GJ and Walmsley, AR. (2003) The pfr1 gene from the human pathogenic fungus Paracoccidioides brasiliensis encodes a half-ABC transporter that is transcribed in response to treatment with fluconazole Yeast, 20, pp. 865 - 880.
32. Izacc, SMS and Gomez, FJ and Jesuino, RSA and (2001) Molecular cloning, characterization and expression of the heat shock protein 60 gene from the human pathogenic fungus Paracoccidioides brasiliensis Med Mycol, 39, pp. 445 - 455.
33. Pereira, M and Felipe, MSS and Brigido, MM and Soares, CMA and Azevedo, MO. (2000) Molecular cloning and characterization of a glucan synthase gene from the human pathogenic fungus Paracoccidioides brasiliensis Yeast, 16, pp. 451 - 462.
34. Venancio, EJ and Daher, BS and Andrade, RV and (2002) The kex2 gene from the dimorphic and human pathogenic fungus Paracoccidioides brasiliensis Yeast, 19, pp. 1221 - 1231.