-
1
-
-
17744413236
-
Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
-
research0032.1-research0032.11
-
Li C, Wong WH. Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application, Genome Biol 2001, 2:research0032.1-research0032.11
-
(2001)
Genome Biol.
, vol.2
-
-
Li, C.1
Wong, W.H.2
-
2
-
-
0033567968
-
Ig V gene mutation status and CD38 expression as novel prognostic indicators in chronic lymphocytic leukemia
-
Damle RN, Wasil T, Fais F, Ghiotto F, Valetto A, Allen SL, Buchbinder A, Budman D, Dittmar K, Kolitz J, Lichtman SM, Schulman P, Vinciguerra VP, Rai KR, Ferrarini M, Chiorazzi N: Ig V gene mutation status and CD38 expression as novel prognostic indicators in chronic lymphocytic leukemia. Blood 1999, 94:1840-1847
-
(1999)
Blood
, vol.94
, pp. 1840-1847
-
-
Damle, R.N.1
Wasil, T.2
Fais, F.3
Ghiotto, F.4
Valetto, A.5
Allen, S.L.6
Buchbinder, A.7
Budman, D.8
Dittmar, K.9
Kolitz, J.10
Lichtman, S.M.11
Schulman, P.12
Vinciguerra, V.P.13
Rai, K.R.14
Ferrarini, M.15
Chiorazzi, N.16
-
3
-
-
0033567907
-
Unmutated Ig V(H) genes are associated with a more aggressive form of chronic lymphocytic leukemia
-
Hamblin TJ, Davis Z, Gardiner A, Oscier DG, Stevenson FK: Unmutated Ig V(H) genes are associated with a more aggressive form of chronic lymphocytic leukemia. Blood 1999, 15:1848-1854
-
(1999)
Blood
, vol.15
, pp. 1848-1854
-
-
Hamblin, T.J.1
Davis, Z.2
Gardiner, A.3
Oscier, D.G.4
Stevenson, F.K.5
-
4
-
-
10744225444
-
High expression of activation-induced cytidine deaminase (AID) and splice variants is a distinctive feature of poor prognosis chronic lymphocytic leukemia
-
McCarthy H, Wierda WG, Barron LL, Cromwell CC, Wang J, Coombes KR, Rangel R, Elenitoba-Johnson KSJ, Keating MJ, Abruzzo LV: High expression of activation-induced cytidine deaminase (AID) and splice variants is a distinctive feature of poor prognosis chronic lymphocytic leukemia. Blood 2003, 101:4903-4908
-
(2003)
Blood
, vol.101
, pp. 4903-4908
-
-
McCarthy, H.1
Wierda, W.G.2
Barron, L.L.3
Cromwell, C.C.4
Wang, J.5
Coombes, K.R.6
Rangel, R.7
Elenitoba-Johnson, K.S.J.8
Keating, M.J.9
Abruzzo, L.V.10
-
5
-
-
2442694094
-
A comparative analysis of data generated using two different target preparation methods for hybridization to high-density oligonucleotide microarrays
-
Gold D, Coombes K, Medhane D, Ramaswamy A, Ju Z, Strong L, Koo JS, Kapoor M: A comparative analysis of data generated using two different target preparation methods for hybridization to high-density oligonucleotide microarrays. BMC Genomics 2004, 5:2
-
(2004)
BMC Genomics
, vol.5
, pp. 2
-
-
Gold, D.1
Coombes, K.2
Medhane, D.3
Ramaswamy, A.4
Ju, Z.5
Strong, L.6
Koo, J.S.7
Kapoor, M.8
-
6
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
-
Li C, Wang WH: Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci USA 2001, 98:31-36
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 31-36
-
-
Li, C.1
Wang, W.H.2
-
7
-
-
0038156106
-
Estimating the occurrence of false positives and false negatives in microarray studies by approximating and partitioning the empirical distribution of p-values
-
Pounds S, Morris SW: Estimating the occurrence of false positives and false negatives in microarray studies by approximating and partitioning the empirical distribution of p-values. Bioinformatics 2003, 19:1236-1242
-
(2003)
Bioinformatics
, vol.19
, pp. 1236-1242
-
-
Pounds, S.1
Morris, S.W.2
-
8
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y: Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B 1995, 57:289-300
-
(1995)
J. R. Stat. Soc. Ser. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
9
-
-
0035992248
-
Empirical bayes methods and false discovery rates for microarrays
-
Efron B, Tibshirani R: Empirical bayes methods and false discovery rates for microarrays. Genet Epidemiol 2002, 23:70-86
-
(2002)
Genet. Epidemiol.
, vol.23
, pp. 70-86
-
-
Efron, B.1
Tibshirani, R.2
-
10
-
-
2342634096
-
DNA-Chip Analyzer (dChip)
-
Edited by G Parmigiani, ES Garrett, R Irizarry, SL Zeger. New York, Springer-Verlag
-
Li C, Wong WH: DNA-Chip Analyzer (dChip). The analysis of gene expression data: methods and software. Edited by G Parmigiani, ES Garrett, R Irizarry, SL Zeger. New York, Springer-Verlag, 2003, pp 120-141
-
(2003)
The Analysis of Gene Expression Data: Methods and Software
, pp. 120-141
-
-
Li, C.1
Wong, W.H.2
-
11
-
-
0037097598
-
Evidence for distinct pathomechanisms in B-cell chronic lymphocytic leukemia and mantle cell lymphoma by quantitative expression analysis of cell cycle and apoptosis-associated genes
-
Korz C, Pscherer A, Benner A, Mertens D, Schaffner C, Leupolt E, Dohner H, Stilgenbauer S, Lichter P: Evidence for distinct pathomechanisms in B-cell chronic lymphocytic leukemia and mantle cell lymphoma by quantitative expression analysis of cell cycle and apoptosis-associated genes. Blood 2002, 99:4554-4561
-
(2002)
Blood
, vol.99
, pp. 4554-4561
-
-
Korz, C.1
Pscherer, A.2
Benner, A.3
Mertens, D.4
Schaffner, C.5
Leupolt, E.6
Dohner, H.7
Stilgenbauer, S.8
Lichter, P.9
-
12
-
-
0019300211
-
Observations on the level of cyclic nucleotides in three population of human lymphocytes in culture
-
Carpentieri U, Monahan TM, Gustavson LP: Observations on the level of cyclic nucleotides in three population of human lymphocytes in culture. J Cyclic Nucleotide Res 1980, 6:253-259
-
(1980)
J. Cyclic. Nucleotide Res.
, vol.6
, pp. 253-259
-
-
Carpentieri, U.1
Monahan, T.M.2
Gustavson, L.P.3
-
13
-
-
0032912961
-
Synthesis of adenine and guanine nucleotides at the 'inosinic branch point' in lymphocytes of leukemia patients
-
Carlucci F, Tabucchi A, Pagani R, Marinello E: Synthesis of adenine and guanine nucleotides at the 'inosinic branch point' in lymphocytes of leukemia patients. Biochim Biophys Acta 1999, 1454:106-114
-
(1999)
Biochim. Biophys. Acta
, vol.1454
, pp. 106-114
-
-
Carlucci, F.1
Tabucchi, A.2
Pagani, R.3
Marinello, E.4
-
14
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen MB, Spellman PT, Brown PO, Botstein D: Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 1998, 95:14863-14868
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
15
-
-
0035684378
-
A model for measurement error for gene expression arrays
-
Rocke DM, Durbin B: A model for measurement error for gene expression arrays. J Comput Biol 2001, 8:557-569
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 557-569
-
-
Rocke, D.M.1
Durbin, B.2
-
16
-
-
0012572299
-
A variance-stabilizing transformation for gene-expression microarray data
-
Durbin BP, Hardin JS, Hawkins DM, Rocke DM: A variance-stabilizing transformation for gene-expression microarray data. Bioinformatics 2002, 18 (Suppl 1):S105-S110
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Durbin, B.P.1
Hardin, J.S.2
Hawkins, D.M.3
Rocke, D.M.4
-
17
-
-
0043089918
-
Transformation and normalization of oligonucleotide microarray data
-
Geller SC, Gregg JP, Hagerman P, Rocke DM: Transformation and normalization of oligonucleotide microarray data. Bioinformatics 2003, 19:1817-1823
-
(2003)
Bioinformatics
, vol.19
, pp. 1817-1823
-
-
Geller, S.C.1
Gregg, J.P.2
Hagerman, P.3
Rocke, D.M.4
-
18
-
-
0035687492
-
Identifying differentially expressed genes in cDNA microarray experiments
-
Baggerly KA, Coombes KR, Hess KR, Stivers DN, Abruzzo LV, Zhang W: Identifying differentially expressed genes in cDNA microarray experiments. J Comput Biol 2001, 8:639-659
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 639-659
-
-
Baggerly, K.A.1
Coombes, K.R.2
Hess, K.R.3
Stivers, D.N.4
Abruzzo, L.V.5
Zhang, W.6
-
19
-
-
0028239241
-
Rch1, a protein that specifically interacts with the RAG-1 recombination-activating protein
-
Cuomo CA, Kirch SA, Gyuris J, Brent R, Oettinger MA: Rch1, a protein that specifically interacts with the RAG-1 recombination-activating protein. Proc Natl Acad Sci USA 1994, 91:6156-6160
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 6156-6160
-
-
Cuomo, C.A.1
Kirch, S.A.2
Gyuris, J.3
Brent, R.4
Oettinger, M.A.5
-
20
-
-
0034595985
-
BSAP (Pax5)-importin alpha 1 (Rch1) interaction identifies a nuclear localization sequence
-
Kovac CR, Emelyanov A, Singh M, Ashouian N, Birshtein BK: BSAP (Pax5)-importin alpha 1 (Rch1) interaction identifies a nuclear localization sequence. J Biol Chem 2000, 275:16752-16757
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 16752-16757
-
-
Kovac, C.R.1
Emelyanov, A.2
Singh, M.3
Ashouian, N.4
Birshtein, B.K.5
-
21
-
-
0036568944
-
TCR engagement and triggering in the absence of large-scale molecular segregation at the T cell-APC contact site
-
Zaru A, Cameron TO, Stern LJ, Muller S, Valitutti s: TCR engagement and triggering in the absence of large-scale molecular segregation at the T cell-APC contact site. J Immunol 2002, 168:4287-4291
-
(2002)
J. Immunol.
, vol.168
, pp. 4287-4291
-
-
Zaru, A.1
Cameron, T.O.2
Stern, L.J.3
Muller, S.4
Valitutti, S.5
-
22
-
-
85047687769
-
Phenotypic heterogeneity of B cells in patients with chronic lymphocytic leukemia/small lymphocytic lymphoma
-
Kampalath B, Barcos MP, Stewart C: Phenotypic heterogeneity of B cells in patients with chronic lymphocytic leukemia/small lymphocytic lymphoma. Am J Clin Pathol 2003, 119:824-832
-
(2003)
Am. J. Clin. Pathol.
, vol.119
, pp. 824-832
-
-
Kampalath, B.1
Barcos, M.P.2
Stewart, C.3
-
23
-
-
0030614912
-
Involvement of p130(Cas) and p105(HEF1), a novel Cas-like docking protein, in a cytoskeleton-dependent signaling pathway initiated by ligation of integrin or antigen receptor on human B cells
-
Manie SN, Beck AR, Astier A, Law SF, Canty T, Hirai H, Druker BJ, Avraham H, Haghayeghi N, Sattler M, Salgia R, Griffin JD, Golemis EA, Freedman AS: Involvement of p130(Cas) and p105(HEF1), a novel Cas-like docking protein, in a cytoskeleton-dependent signaling pathway initiated by ligation of integrin or antigen receptor on human B cells. J Biol Chem 1997, 272:4230-4236
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 4230-4236
-
-
Manie, S.N.1
Beck, A.R.2
Astier, A.3
Law, S.F.4
Canty, T.5
Hirai, H.6
Druker, B.J.7
Avraham, H.8
Haghayeghi, N.9
Sattler, M.10
Salgia, R.11
Griffin, J.D.12
Golemis, E.A.13
Freedman, A.S.14
-
24
-
-
0034804319
-
Identification and characterization of DPZF, a novel human BTB/POZ zinc finger protein sharing homology to BCL-6
-
Zhang W, Mi J, Li N, Sui L, Wan T, Zhang J, Chen T, Cao X: Identification and characterization of DPZF, a novel human BTB/POZ zinc finger protein sharing homology to BCL-6. Biochem Biophys Res Commun 2001, 282:1067-1073
-
(2001)
Biochem. Biophys. Res. Commun.
, vol.282
, pp. 1067-1073
-
-
Zhang, W.1
Mi, J.2
Li, N.3
Sui, L.4
Wan, T.5
Zhang, J.6
Chen, T.7
Cao, X.8
-
25
-
-
0036464608
-
CD38 expression and immunoglobulin variable region mutations are independent prognostic variables in chronic lymphocytic leukemia, but CD38 expression may vary during the course of the disease
-
Hamblin TJ, Orchard JA, Ibbotson RE, Davis Z, Thomas PW, Stevenson FK, Oscier DG: CD38 expression and immunoglobulin variable region mutations are independent prognostic variables in chronic lymphocytic leukemia, but CD38 expression may vary during the course of the disease. Blood 2002, 99:1023-1029
-
(2002)
Blood
, vol.99
, pp. 1023-1029
-
-
Hamblin, T.J.1
Orchard, J.A.2
Ibbotson, R.E.3
Davis, Z.4
Thomas, P.W.5
Stevenson, F.K.6
Oscier, D.G.7
-
26
-
-
0037114744
-
Expression of ZAP-70 is associated with increased B-cell receptor signaling in chronic lymphocytic leukemia
-
Chen L, Widhopf G, Huynh L, Rassenti L, Rai KR, Weiss A, Kipps TJ: Expression of ZAP-70 is associated with increased B-cell receptor signaling in chronic lymphocytic leukemia. Blood 2002, 100:4609-4614
-
(2002)
Blood
, vol.100
, pp. 4609-4614
-
-
Chen, L.1
Widhopf, G.2
Huynh, L.3
Rassenti, L.4
Rai, K.R.5
Weiss, A.6
Kipps, T.J.7
-
27
-
-
10744222814
-
ZAP-70 expression identifies a chronic lymphocytic leukemia subtype with unmutated immunoglobulin genes, inferior clinical outcome, and distinct gene expression profile
-
Wiestner A, Rosenwald A, Barry TS, Wright G, Davis RE, Henrickson SE, Zhao H, Ibbotson RE, Orchard JA, Davis Z, Stetler-Stevenson M, Raffeld M, Arthur DC, Marti GE, Wilson WH, Hamblin TJ, Oscier DG, Staudt LM: ZAP-70 expression identifies a chronic lymphocytic leukemia subtype with unmutated immunoglobulin genes, inferior clinical outcome, and distinct gene expression profile. Blood 2003, 101:4944-4951
-
(2003)
Blood
, vol.101
, pp. 4944-4951
-
-
Wiestner, A.1
Rosenwald, A.2
Barry, T.S.3
Wright, G.4
Davis, R.E.5
Henrickson, S.E.6
Zhao, H.7
Ibbotson, R.E.8
Orchard, J.A.9
Davis, Z.10
Stetler-Stevenson, M.11
Raffeld, M.12
Arthur, D.C.13
Marti, G.E.14
Wilson, W.H.15
Hamblin, T.J.16
Oscier, D.G.17
Staudt, L.M.18
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