The P-7 incompatibility group plasmids responsible for biodegradation of naphthalene and salicylate in fluorescent pseudomonads

Microbiology

Volumn 74, Issue 3, 2005, Pages 290-295

  Izmalkova, T Yu ^a   Sazonova, O I ^b   Sokolov, S L ^a   Kosheleva, I A ^a,b   Boronin, A M ^a,b  

^a SKRYABIN INSTITUTE OF BIOCHEMISTRY AND PHYSIOLOGY OF MICROORGANISMS   (Russian Federation)

^b PUSHCHINO STATE UNIVERSITY   (Russian Federation)

Author keywords

Biodegradation; Fluorescent pseudomonads; IncP 7 plasmids; Naphthalene catabolism genes

Indexed keywords

PSEUDOMONAS FLUORESCENS; PSEUDOMONAS FLUORESCENS GROUP;

EID: 23744483540     PISSN: 00262617     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11021-005-0065-0     Document Type: Article

References (18)

1. Kochetkov, V.V. and Boronin, A.M., A Comparative Study of Plasmids Controlling the Biodegradation of Naphthalene in the Pseudomonas Culture, Mikrobiologiya, 1984, vol. 53, pp. 639-644.
2. Izmalkova, T.Yu., Mavrodi, D.V., Sokolov, S.I., Kosheleva, I.A., and Boronin, A.M., Molecular Classification of IncP-7 Naphthalene Degradation Plasmids (in press).
3. Sambrook, J., Fritsch, E.F., and Maniatis, T., Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor: Cold Spring Harbor Lab., 1989.
4. Evans, C.G.T., Herbert, D., and Tempest, D.W., The Continuous Cultivation of Microorganisms: II. Construction of a Chemostat, Methods Microbiol., 1970, vol. 2, pp. 277-327.
5. Short Protocols in Molecular Biology, Ausubel, F.M. et al., Eds., New York: John Wiley & Sons, 1999, p. 1056.
6. Weisburg, W.G., Barnes, S.M., Pelletier, D.A., and Lane, D.J., 16S Ribosomal DNA Amplification for Phylogenetic Study, J. Bacteriol., 1991, vol. 73, pp. 697-703.
7. Greated, A. and Thomas, C.M., A Pair of PCR Primers for IncP-9 Plasmids, Microbiology (UK), 1999, vol. 145, pp. 3003-3004.
8. Ferrero, M., Llobet-Brossa, E., Lalucat, J., Garcia-Valdes, E., Rosselo-Mora, R., and Bosch, R. Coexistence of Two Distinct Copies of Naphthalene Degradation Genes in Pseudomonas Strains Isolated from the Western Mediterranean Region, Appl. Environ. Microbiol., 2002, vol. 68, pp. 957-962.
9. Wilkstrom, P., Wilklund, A., Anderson, A.C., and Forman, M., DNA Recovery and PCR Quantification of Catechol-2,3-Dioxygenase Genes from Different Soil Types, J. Biotechnol., 1996, vol. 52, pp. 107-120.
10. Izmalkova, T.Yu., Sazonova, O.I., Sokolov, S.L., Kosheleva, I.A., and Boronin, A.M., Diversity of Genetic System Responsible for Naphthalene Biodegradation in Pseudomonas fluorescens Strains (in press).
11. Maeda, K., Nojiri, H., Shintani, M., Yoshida, T., Habe, H., and Omori, T., Complete Nucleotide Sequence of Carbazole/Dioxin Degrading Plasmid pCAR1 in Pseudomonas resinovorans Strain CA10 Indicates Its Mosaicity and the Presence of Large Catabolic Transposon Tn4676, J. Mol. Biol., 2003, vol. 326, pp. 21-33.
12. Bergey's Manual of Systematic Bacteriology, Krieg, N.R. and Holt, J.G., Eds., London: Williams & Wilkins, 1984.
13. Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J., Basic Local Alignment Search Tool, J. Mol. Biol., 1990, vol. 215, pp. 403-410.
14. Van de Peer, Y. and De Wachter, R., TREECON for Windows: A Software Package for the Construction and Drawing of Evolutionary Trees for the Microsoft Windows Environment, Comput. Appl. Biosci., 1994, vol. 10, pp. 569-570.
15. Phenotypic Traits Conferred by Plasmids, The Horizontal Gene Pool, Top, E.M. et al., Eds., Amsterdam: Harwood Academic, 2000, pp. 249-285.
16. Fuenmayor, S.L., Wild, M., Boyles, A.L., and Williams, P.A., A Gene Cluster Encoding Steps in Conversion of Naphthalene to Gentisate in Pseudomonas sp. Strain U2, J. Bacteriol., 1998, vol. 180, pp. 2522-2530.
17. Hickey, W.J., Sabat, G., Yuroff, A.S., Arment, A.R., and Perez-Lesher, J., Cloning, Nucleotide Sequencing, and Functional Analysis of a Novel, Mobile Cluster of Biodegradation Genes from Pseudomonas aeruginosa JB2, Appl. Environ. Microbiol., 2001, vol. 67, pp. 4603-4609.
18. Zhou, N.-Yi., Al-Dulayymi, J., Baird, M.S., and Williams, P.A., Salicylate 5-Hydroxylase from Ralstonia sp. Strain U2: A Monooxygenase with Close Relationships to and Shared Electron Transport Proteins with Naphthalene Dioxygenase, J. Bacteriol., 2002, vol. 184, pp. 1547-1555.