Characterisation of the Aspergillus niger dapB gene, which encodes a novel fungal type IV dipeptidyl aminopeptidase

Molecular Genetics and Genomics

Volumn 273, Issue 4, 2005, Pages 319-325

  Jalving, Ruud ^a   Godefrooij, Jeroen ^a   Ter Veen, Wim J ^a   Van Ooyen, Albert J J ^a   Schaap, Peter J ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

Aspergillus niger; dapB; Dipeptidase aminopeptidase; Filamentous fungus

Indexed keywords

DIPEPTIDYL PEPTIDASE;

ARTICLE; CLUSTER ANALYSIS; CONTROLLED STUDY; GENE OVEREXPRESSION; GENETIC CODE; GENOMICS; MATURATION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN DOMAIN; YEAST;

ASPERGILLUS NIGER; BASE SEQUENCE; BLOTTING, NORTHERN; BLOTTING, SOUTHERN; CLUSTER ANALYSIS; COMPUTATIONAL BIOLOGY; DIPEPTIDYL PEPTIDASES; DNA PRIMERS; GENES, FUNGAL; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ANALYSIS, DNA;

ASPERGILLUS NIGER; FUNGI;

EID: 23744452791     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-005-1134-9     Document Type: Article

References (19)

1. Abbott CA, McCaughan GW, Gorrell MD (1999) Two highly conserved glutamic acid residues in the predicted β propeller domain of dipeptidyl peptidase IV are required for its enzyme activity. FEBS Lett 458:278-284
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
3. Anna-Arriola SS, Herskowitz I (1994) Isolation and DNA sequence of the STE13 gene encoding dipeptidyl aminopeptidase. Yeast 10:801-810
4. Beauvais A, Monod M, Wyniger J, Debeaupuis JP, Grouzmann E, Brakch N, Svab J, Hovanessian AG, Latgé JP (1997) Dipeptidyl-peptidase IV secreted by Aspergillus fumigatus, a fungus pathogenic to humans. Infect Immun 65:3042-3047
5. Bobrowicz P, Pawlak R, Correa A, Bell-Pedersen D, Ebbole DJ (2002) The Neurospora crassa pheromone precursor genes are regulated by the mating type locus and the circadian clock. Mol Microbiol 45:795-804
6. Cunningham DF, O'Connor B (1997) Proline specific peptidases. Biochim Biophys Acta 1343:160-186
7. De Graaff L, van den Broek H, Visser J (1988) Isolation and expression of the Aspergillus nidulans pyruvate kinase gene. Curr Genet 13:315-321
8. Doumas A, van den Broek P, Affolter M, Monod M (1998) Characterization of the prolyl dipeptidyl peptidase gene (dppIV) from the koji mold Aspergillus oryzae. Appl Environ Microbiol 64:4809-4815
9. Felsenstein J (1995) PHYLIP: Phylogeny Inference Package (Version 3.57c). University of Washington, Seattle, Wash
10. Hirokawa T, Boon-Chieng S, Mitaku S (1998) SOSUI: classification and secondary structure prediction system for membrane proteins. Bioinformatics 14:378-379
11. Kreil G (1990) Processing of precursors by dipeptidylaminopeptidases: a case of molecular ticketing. Trends Biochem Sci 15:23-26
12. Krogh A, Larsson B, Von Heijne G, Sonnhammer ELL (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305:567-580
13. Kusters-van Someren MA, Harmsen JAM, Kester HCM, Visser J (1991) Structure of the Aspergillus niger pelA gene and its expression in Aspergillus niger and Aspergillus nidulans. Curr Genet 20:293-299
14. Nielsen H, Engelbrecht J, Brunak S, von Heijne G (1997) Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng 10:1-6
15. Page RD (1996) TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358
16. Pontecorvo G, Roper JA, Hemmons LJ, MacDonald KD, Bufton AWJ (1953) The genetics of Aspergillus nidulans. Adv Genet 5:141-238
17. Roberts CJ, Pohlig G, Rothman JH, Stevens TH (1989) Structure, biosynthesis, and localisation of dipeptidyl aminopeptidase B, an integral membrane glycoprotein of the yeast vacuole. J Cell Biol 108:1363-1373
18. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
19. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680