메뉴 건너뛰기




Volumn 24, Issue 8, 2005, Pages 1902-1911

Molecular simulation of a model of dissolved organic matter

Author keywords

Cation binding; Dissolved organic matter; Humic substances; Molecular simulation

Indexed keywords

COMPUTER SIMULATION; HYDRATION; HYDROGEN BONDS; MATHEMATICAL MODELS; MOLECULAR DYNAMICS; POSITIVE IONS; SOILS; SOLVENTS;

EID: 23744452738     PISSN: 07307268     EISSN: None     Source Type: Journal    
DOI: 10.1897/04-567R.1     Document Type: Article
Times cited : (76)

References (50)
  • 1
    • 0035872626 scopus 로고    scopus 로고
    • Molecular simulation of interlayer structure and dynamics in 12.4 Å Cs-smectite hydrates
    • Sutton R, Sposito G. 2001. Molecular simulation of interlayer structure and dynamics in 12.4 Å Cs-smectite hydrates. J Colloid Interface Sci 237:174-184.
    • (2001) J Colloid Interface Sci , vol.237 , pp. 174-184
    • Sutton, R.1    Sposito, G.2
  • 2
    • 0042739431 scopus 로고    scopus 로고
    • Monte Carlo and molecular dynamics simulation of uranyl adsorption on montmorillonite clay
    • Zaidan OF, Greathouse JA, Pabalan RT. 2003. Monte Carlo and molecular dynamics simulation of uranyl adsorption on montmorillonite clay. Clays and Clay Minerals 51:372-381.
    • (2003) Clays and Clay Minerals , vol.51 , pp. 372-381
    • Zaidan, O.F.1    Greathouse, J.A.2    Pabalan, R.T.3
  • 3
    • 0000893156 scopus 로고    scopus 로고
    • Molecular dynamics simulations of sorption of organic compounds at the clay mineral/aqueous solution interface
    • Teppen BJ, Yu C-H, Miller DM, Schafer L. 1998. Molecular dynamics simulations of sorption of organic compounds at the clay mineral/aqueous solution interface. Journal of Computational Chemistry 19:144-153.
    • (1998) Journal of Computational Chemistry , vol.19 , pp. 144-153
    • Teppen, B.J.1    Yu, C.-H.2    Miller, D.M.3    Schafer, L.4
  • 4
    • 85103036658 scopus 로고    scopus 로고
    • Predicting chemical reactivity of humic substances for minerals and xenobiotics: Use of computational chemistry, scanning probe microscopy and virtual reality
    • Clapp CE, Hayes MHB, Senesi N, Bloom PR, Jardine PM, eds. Soil Science Society of America, Madison, WI
    • Bailey GW, Akim LG, Shevchenko SM. 2001. Predicting chemical reactivity of humic substances for minerals and xenobiotics: Use of computational chemistry, scanning probe microscopy and virtual reality. In Clapp CE, Hayes MHB, Senesi N, Bloom PR, Jardine PM, eds, Humic Substances and Chemical Contaminants. Soil Science Society of America, Madison, WI, pp 41-72.
    • (2001) Humic Substances and Chemical Contaminants , pp. 41-72
    • Bailey, G.W.1    Akim, L.G.2    Shevchenko, S.M.3
  • 7
    • 0035102127 scopus 로고    scopus 로고
    • Effects of metal cations on sorption and desorption of organic compounds in humic acids
    • Yuan G, Xing B. 2001. Effects of metal cations on sorption and desorption of organic compounds in humic acids. Soil Sci 166:107-115.
    • (2001) Soil Sci , vol.166 , pp. 107-115
    • Yuan, G.1    Xing, B.2
  • 8
    • 0027833027 scopus 로고
    • Measurement of electrostatic and site-specific associations of alkali metal cations with humic acid
    • Bonn BA, Fish W. 1993. Measurement of electrostatic and site-specific associations of alkali metal cations with humic acid. J Soil Sci 44:335-345.
    • (1993) J Soil Sci , vol.44 , pp. 335-345
    • Bonn, B.A.1    Fish, W.2
  • 9
    • 0025061398 scopus 로고
    • Study of the polyelectrolyte properties of humic acids by conductimetric titration
    • Van den Hoop MAGT, van Leeuwen HP. 1990. Study of the polyelectrolyte properties of humic acids by conductimetric titration. Anal Chim Acta 232:141-148.
    • (1990) Anal Chim Acta , vol.232 , pp. 141-148
    • Van Den Hoop, M.A.G.T.1    Van Leeuwen, H.P.2
  • 10
    • 0000202797 scopus 로고
    • Implications of elemental characteristics of humic substances
    • Aiken GR, McKnight DM, Wershaw RL, eds. John Wiley, New York, NY, USA
    • Steelink C. 1985. Implications of elemental characteristics of humic substances. In Aiken GR, McKnight DM, Wershaw RL, eds, Humic Substances in Soil, Sediment, and Water. John Wiley, New York, NY, USA, pp 457-476.
    • (1985) Humic Substances in Soil, Sediment, and Water , pp. 457-476
    • Steelink, C.1
  • 12
    • 0001760643 scopus 로고
    • Chemistry of dissolved organic matter in rivers, lakes, and reservoirs
    • Baker LA, ed. American Chemical Society, Washington, DC
    • Leenheer JA. 1994. Chemistry of dissolved organic matter in rivers, lakes, and reservoirs. In Baker LA, ed, Environmental Chemistry of Lakes and Reservoirs. American Chemical Society, Washington, DC, pp 195-221.
    • (1994) Environmental Chemistry of Lakes and Reservoirs , pp. 195-221
    • Leenheer, J.A.1
  • 14
    • 0028989199 scopus 로고
    • Strong-acid, carboxyl-group structures in fulvic acid from the Suwannee River, Georgia. 2. Major structures
    • Leenheer JA, Wershaw RL, Reddy MM. 1995. Strong-acid, carboxyl-group structures in fulvic acid from the Suwannee River, Georgia. 2. Major structures. Environ Sci Technol 29:399-405.
    • (1995) Environ Sci Technol , vol.29 , pp. 399-405
    • Leenheer, J.A.1    Wershaw, R.L.2    Reddy, M.M.3
  • 15
    • 0027531068 scopus 로고
    • A state of the art structural concept for humic substances
    • Schulten H-R, Schnitzer M. 1993. A state of the art structural concept for humic substances. Naturwissenschaften 80:29-30.
    • (1993) Naturwissenschaften , vol.80 , pp. 29-30
    • Schulten, H.-R.1    Schnitzer, M.2
  • 16
    • 0032636372 scopus 로고    scopus 로고
    • Analytical pyrolysis and computational chemistry of aquatic humic substances and dissolved organic matter
    • Schulten H-R. 1999. Analytical pyrolysis and computational chemistry of aquatic humic substances and dissolved organic matter. J Anal Appl Pyrolysis 49:385-415.
    • (1999) J Anal Appl Pyrolysis , vol.49 , pp. 385-415
    • Schulten, H.-R.1
  • 17
    • 0000226131 scopus 로고    scopus 로고
    • The mystery of the lignin-carbohydrate complex: A computational approach
    • Shevchenko SM, Bailey GW. 1996. The mystery of the lignin-carbohydrate complex: A computational approach. Journal of Molecular Structure 364:197-208.
    • (1996) Journal of Molecular Structure , vol.364 , pp. 197-208
    • Shevchenko, S.M.1    Bailey, G.W.2
  • 18
    • 0037758393 scopus 로고    scopus 로고
    • Binding of hydrophobic organic compounds to dissolved humic substances: A predictive approach based on computer assisted structure elucidation, atomistic simulations and Flory-Huggins solution theory
    • Ghabbour EA, Davies G, eds. Royal Society of Chemistry, London, UK
    • Diallo MS, Faulon J-L, Goddard WA, Johnson JH. 2001. Binding of hydrophobic organic compounds to dissolved humic substances: A predictive approach based on computer assisted structure elucidation, atomistic simulations and Flory-Huggins solution theory. In Ghabbour EA, Davies G, eds, Humic Substances: Structures, Models, and Functions. Royal Society of Chemistry, London, UK, pp 221-237.
    • (2001) Humic Substances: Structures, Models, and Functions , pp. 221-237
    • Diallo, M.S.1    Faulon, J.-L.2    Goddard, W.A.3    Johnson, J.H.4
  • 19
    • 0038674664 scopus 로고    scopus 로고
    • 3-D structural modeling of humic acids through experimental characterization, computer assisted structure elucidation and atomistic simulations. 1. Chelsea soil humic acid
    • Diallo MS, Simpson A, Gassman P, Faulon JL, Johnson JH, Goddard WA, Hatcher PG. 2003. 3-D structural modeling of humic acids through experimental characterization, computer assisted structure elucidation and atomistic simulations. 1. Chelsea soil humic acid. Environ Sci Technol 37:1783-1793.
    • (2003) Environ Sci Technol , vol.37 , pp. 1783-1793
    • Diallo, M.S.1    Simpson, A.2    Gassman, P.3    Faulon, J.L.4    Johnson, J.H.5    Goddard, W.A.6    Hatcher, P.G.7
  • 20
    • 0032843384 scopus 로고    scopus 로고
    • Models of natural organic matter and interactions with organic contaminants
    • Kubicki JD, Apitz SE. 1999. Models of natural organic matter and interactions with organic contaminants. Organic Geochemistry 30:911-927.
    • (1999) Organic Geochemistry , vol.30 , pp. 911-927
    • Kubicki, J.D.1    Apitz, S.E.2
  • 22
    • 0032811260 scopus 로고    scopus 로고
    • Interactions of dissolved organic matter with xenobiotic compounds: Molecular modeling in water
    • Schulten H-R. 1999. Interactions of dissolved organic matter with xenobiotic compounds: Molecular modeling in water. Environ Toxicol Chem 18:1643-1655.
    • (1999) Environ Toxicol Chem , vol.18 , pp. 1643-1655
    • Schulten, H.-R.1
  • 24
    • 33645206719 scopus 로고    scopus 로고
    • San Diego, CA, USA
    • 2 Release 4.6. San Diego, CA, USA.
    • (2001) 2 Release 4.6
  • 25
    • 0001189010 scopus 로고    scopus 로고
    • COMPASS: An ab initio force-field optimized for condensed-phase applications-Overview with details on alkane and benzene compounds
    • Sun H. 1998. COMPASS: An ab initio force-field optimized for condensed-phase applications-Overview with details on alkane and benzene compounds. J Phys Chem B 102:7338-7364.
    • (1998) J Phys Chem B , vol.102 , pp. 7338-7364
    • Sun, H.1
  • 26
    • 0007892625 scopus 로고    scopus 로고
    • Molecular mechanics and quantum mechanical modeling of hexane soot structure and interactions with pyrene
    • Kubicki JD. 2000. Molecular mechanics and quantum mechanical modeling of hexane soot structure and interactions with pyrene. Geochemical Transactions 7:41-46.
    • (2000) Geochemical Transactions , vol.7 , pp. 41-46
    • Kubicki, J.D.1
  • 29
    • 85101662157 scopus 로고    scopus 로고
    • New ideas on the chemical make-up of soil humic and fulvic acids
    • Huang PM, Sparks DL, Boyds SA, eds. Soil Science Society of America, Madison, WI
    • Schnitzer M, Schulten H-R. 1998. New ideas on the chemical make-up of soil humic and fulvic acids. In Huang PM, Sparks DL, Boyds SA, eds, Future Prospects for Soil Chemistry. Soil Science Society of America, Madison, WI, pp 153-177.
    • (1998) Future Prospects for Soil Chemistry , pp. 153-177
    • Schnitzer, M.1    Schulten, H.-R.2
  • 31
    • 0000014013 scopus 로고
    • Monte Carlo computer simulation studies of the equilibrium properties and structure of liquid water
    • Haile JM, Mansoori, GA, eds. American Chemical Society, Washington, DC
    • Beveridge DL, Mezei M, Mehrotra PK, Marchese FT, Ravi-Shanker G, Vasu T, Swaminathan S. 1983. Monte Carlo computer simulation studies of the equilibrium properties and structure of liquid water. In Haile JM, Mansoori, GA, eds, Molecular-Based Study of Fluids. American Chemical Society, Washington, DC, pp 297-351.
    • (1983) Molecular-Based Study of Fluids , pp. 297-351
    • Beveridge, D.L.1    Mezei, M.2    Mehrotra, P.K.3    Marchese, F.T.4    Ravi-Shanker, G.5    Vasu, T.6    Swaminathan, S.7
  • 32
    • 46149133757 scopus 로고
    • A new determination of the structure of water at 25°C
    • Soper AK, Phillips MG. 1986. A new determination of the structure of water at 25°C. Chemical Physics 107:47-60.
    • (1986) Chemical Physics , vol.107 , pp. 47-60
    • Soper, A.K.1    Phillips, M.G.2
  • 33
    • 0002666482 scopus 로고    scopus 로고
    • A computation chemistry approach to study the interactions of humic substances with mineral surfaces
    • Davies G, Ghabbour EA, eds. Royal Society of Chemistry, Cambridge, UK
    • Akim LG, Bailey GW, Shevchenko SM. 1998. A computation chemistry approach to study the interactions of humic substances with mineral surfaces. In Davies G, Ghabbour EA, eds, Humic Substances: Structures, Properties, and Uses. Royal Society of Chemistry, Cambridge, UK, pp 133-145.
    • (1998) Humic Substances: Structures, Properties, and Uses , pp. 133-145
    • Akim, L.G.1    Bailey, G.W.2    Shevchenko, S.M.3
  • 34
    • 0040317037 scopus 로고    scopus 로고
    • Conformational modeling of a new building block of humic acid: Approaches to the lowest energy conformer
    • Sein LT, Varnum JM, Jansen SA. 1999. Conformational modeling of a new building block of humic acid: Approaches to the lowest energy conformer. Environ Sci Technol 33:546-552.
    • (1999) Environ Sci Technol , vol.33 , pp. 546-552
    • Sein, L.T.1    Varnum, J.M.2    Jansen, S.A.3
  • 35
    • 0033604991 scopus 로고    scopus 로고
    • The conformational dynamics of humic polyanions in model organic and organo-mineral aggregates
    • Shevchenko SM, Bailey GW, Akim LG. 1999. The conformational dynamics of humic polyanions in model organic and organo-mineral aggregates. Journal of Molecular Structure 460:179-190.
    • (1999) Journal of Molecular Structure , vol.460 , pp. 179-190
    • Shevchenko, S.M.1    Bailey, G.W.2    Akim, L.G.3
  • 36
    • 0142025560 scopus 로고
    • Structure and dynamics of hydrated ions
    • Ohtaki H, Radnai T. 1993. Structure and dynamics of hydrated ions. Chem Rev 93:1157-1204.
    • (1993) Chem Rev , vol.93 , pp. 1157-1204
    • Ohtaki, H.1    Radnai, T.2
  • 37
    • 0013371585 scopus 로고    scopus 로고
    • Humic acid pseudomicelles in dilute aqueous solution: Fluorescence and surface tension measurements
    • Ghabbour EA, Davies G, eds. Royal Society of Chemistry, Cambridge, UK
    • Von Wandruszka R, Engebretson RR, Yates LM. 1999. Humic acid pseudomicelles in dilute aqueous solution: Fluorescence and surface tension measurements. In Ghabbour EA, Davies G, eds, Understanding Humic Substances: Advanced Methods, Properties, and Applications. Royal Society of Chemistry, Cambridge, UK, pp 79-85.
    • (1999) Understanding Humic Substances: Advanced Methods, Properties, and Applications , pp. 79-85
    • Von Wandruszka, R.1    Engebretson, R.R.2    Yates, L.M.3
  • 38
    • 0012340669 scopus 로고    scopus 로고
    • Small-angle x-ray scattering by solutions of biological macromolecules
    • Franchon E, Geissler E, Hodeau J-L, Regnard J-R, Timmins PA, eds. Oxford University Press, Oxford, UK
    • Vachette P, Svergun D. 2000. Small-angle x-ray scattering by solutions of biological macromolecules. In Franchon E, Geissler E, Hodeau J-L, Regnard J-R, Timmins PA, eds, Structure and Dynamics of Biomolecules: Neutron and Synchrotron Radiation for Condensed Matter Studies. Oxford University Press, Oxford, UK, pp 199-237.
    • (2000) Structure and Dynamics of Biomolecules: Neutron and Synchrotron Radiation for Condensed Matter Studies , pp. 199-237
    • Vachette, P.1    Svergun, D.2
  • 40
    • 0032988357 scopus 로고    scopus 로고
    • Monte Carlo simulation of the total radial distribution function for interlayer water in sodium and potassium montmorillonites
    • Sposito G, Park SH, Sutton R. 1999. Monte Carlo simulation of the total radial distribution function for interlayer water in sodium and potassium montmorillonites. Clays and Clay Minerals 47:192-200.
    • (1999) Clays and Clay Minerals , vol.47 , pp. 192-200
    • Sposito, G.1    Park, S.H.2    Sutton, R.3
  • 45
    • 1542602338 scopus 로고
    • Sodium humate solution studied with small-angle x-ray scattering
    • Wershaw RL, Burcar PJ, Sutula CL, Wiginton BJ. 1967. Sodium humate solution studied with small-angle x-ray scattering. Science 157:1429-1431.
    • (1967) Science , vol.157 , pp. 1429-1431
    • Wershaw, R.L.1    Burcar, P.J.2    Sutula, C.L.3    Wiginton, B.J.4
  • 46
    • 0031939398 scopus 로고    scopus 로고
    • Hydration-facilitated sorption of specifically interacting organic compounds by model soil organic matter
    • Graber ER, Borisover MD. 1998. Hydration-facilitated sorption of specifically interacting organic compounds by model soil organic matter. Environ Sci Technol 32:258-263.
    • (1998) Environ Sci Technol , vol.32 , pp. 258-263
    • Graber, E.R.1    Borisover, M.D.2
  • 47
    • 0033135515 scopus 로고    scopus 로고
    • Aggregate structures of sorbed humic substances observed in aqueous solutions
    • Maurice PA, Namjesnik-Dejanovic K. 1999. Aggregate structures of sorbed humic substances observed in aqueous solutions. Environ Sci Technol 33:1538-1541.
    • (1999) Environ Sci Technol , vol.33 , pp. 1538-1541
    • Maurice, P.A.1    Namjesnik-Dejanovic, K.2
  • 48
    • 0040185944 scopus 로고
    • The isolation and characterization of stable metal-organic complexes from tropical volcanic soils
    • Griffith SM, Schnitzer M. 1975. The isolation and characterization of stable metal-organic complexes from tropical volcanic soils. Soil Sci 120:126-131.
    • (1975) Soil Sci , vol.120 , pp. 126-131
    • Griffith, S.M.1    Schnitzer, M.2
  • 49
    • 0031661178 scopus 로고    scopus 로고
    • Metal binding in estuarine humic and fulvic acids: FTIR analysis of humic acid-metal complexes
    • Alberts JJ, Filip Z. 1998. Metal binding in estuarine humic and fulvic acids: FTIR analysis of humic acid-metal complexes. Environ Technol 19:923-931.
    • (1998) Environ Technol , vol.19 , pp. 923-931
    • Alberts, J.J.1    Filip, Z.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.