The first results of an investigation into the phylogenetic diversity of microorganisms in southern Baikal sediments in the region of subsurface discharge of methane hydrates

Microbiology

Volumn 74, Issue 3, 2005, Pages 314-320

  Shubenkova, O V ^a   Zemskaya, T I ^a   Chernitsyna, S M ^a   Khlystov, O M ^a   Triboi, T I ^a  

^a LIMNOLOGICAL INSTITUTE   (Russian Federation)

Author keywords

16S rRNA; Biodiversity; Bottom sediments; Lake Baikal

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS); PSEUDOMONAS; UNCULTURED BACTERIUM;

EID: 23744452462     PISSN: 00262617     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11021-005-0069-9     Document Type: Article

References (17)

1. Hutchinson, R.D., Lee, M.N., Scholz, C.A., Golmshtok, A.J., and Johnson, A.H., Lake Baikal: Gas Hydrate Character in an Active Rift Lake, EOS, 1995, vol. 76, p. 163.
2. Golmshtok, A.Ya., Duchkov, A.D., Hatchinson, D.R., Khanukaev, S.B., and El'nikov, A.I., Evaluation of the Heat Flux at Lake Baikal by Seismic Data on the Lower Boundary of the Gas-Hydrate Layer, Geol. Geofiz., 1997, no. 10, pp. 1677-1691.
3. Klerks, Ya., Zemskaya, T.I., Matveeva, T.V., Khlystov, O.M., Grachev, M.A., Namsaraev, B.B., Dagurova, O.P., Golobokova, L.P., Vorob'eva, S.S., Pogodaeva, T.P., Granin, N.G., Kalmychkov, G.V., Ponomarchuk, V.A., Shoji, H., Mazurenko, L.L., Kaulio, V.V., and Solov'ev, V.A., Methane Hydrates in the Surface Layer of Deep-Water Sediments of Lake Baikal, Dokl. Akad. Nauk, 2003, vol. 393, no. 6, pp. 822-826.
4. Egorov, V.N., Polikarpov, G.G., Gulin, S.B., Artemov, Yu.G., Stokozov, N.A., and Kostrova, S.K., Modern Concepts of the Ecological Role of Methane Seeps at the Bottom of the Black Sea, Tez. Dokl. XV Mezhdunar. Shkoly Morskoi Geologii (XV Int. School on Marine Geology, Abstracts), 2003, vol. 1, pp. 315-316.
5. Kuz'min, M.I., Kalmychkov, G.V., Geletii, V.A., Gnilusha, V.A., Goreglyad, A.V., Khakhaev, B.N., Pevzner, L.A., Kawai, T., Yoshida, N., Duchkov, A.D., Ponomarchuk, V.A., Kontorovich, A.E., Bazhin, N.M., Makhov, G.A., Dyadin, Yu.A., Kuznetsov, F.A., Larionov, E.G., Manakov, A.Yu., Smolyakov, B.S., Mandelbaum, M.M., and Zheleznyakov, N.K., First Finding of Gas Hydrates in Bottom Sediments of Lake Baikal, Dokl. Akad. Nauk, 1998, vol. 362, no. 4, pp. 541-543.
6. Kuz'min, M.I., Kalmychkov, G.V., Duchkov, A.D., Geletii, I.F., Gol'mshtok, A.Ya., Karabanov, E.B., Khakhaev, B.N., Pevzner, L.A., Yoshida, Kh., Bazhin, N.M., Dyadin, Ya.A., Larionov, E.G., Manakov, A.Ya., Mandel'baum, M.M., and Vashchenko, I.F., Methane Hydrates in Bottom Sediments of Lake Baikal, Geol. Rudn. Mestorozhd., 2000, vol. 42, no. 1, pp. 20-32.
7. Lanoil, B.D. and Sassen, R., La Duc M.T., Sweet S.T. Bacteria and Archaea Physically Associated with Gulf of Mexico Gas Hydrates, Appl. Environ. Microbiol., 2001, vol. 67, pp. 5143-5153.
8. Nauhaus, K., Boetius, A., Kruger, M., and Widdel, F., In Vitro Demonstration of Anaerobic Oxidation of Methane Coupled to Sulphate Reduction in Sediment from a Marine Gas Hydrate Area, Environ. Microbiol., 2002, vol. 4, pp. 296-305.
9. Mills, H.J., Hodges, C., and Wilson, K., MacDonald, I.R., and Sobesky, P.A., Microbial Diversity in Sediments Associated with Surface-Breaching Gas Hydrate Mounds in the Gulf of Mexico, FEMS Microbiol. Ecol., 2003, vol. 46, pp. 39-52.
10. Boetius, A., Raveschlag, K., Schubert, C.J., Rickert, D., Widdel, F., Gieseke, A., Amann, R., Jorgensen, B.B., Witte, U., and Pfannkuche, O., A Marine Microbial Consortium Apparently Mediating Anaerobic Oxidation of Methane, Nature, 2000, vol. 407, pp. 623-626.
11. Orphan, V.J., Hinrichs, K.U., Ussler, W., Paull, I., Taylor, L.T., Sylva, S.P., Hayes, J.M., and DeLong, E.F., Comparative Analysis of Methane-Oxidizing Archaea and Sulfate-Reducing Bacteria in Anoxic Marine Sediments, Appl. Environ. Microbiol., 2001, vol. 67, pp. 1922-1934.
12. Dagurova, O.P., Namsaraev, B.B., Kozyreva, L.P., Zemskaya, T.I., and Dulov, L.E., Bacterial Processes of the Methane Cycle in Bottom Sediments of Lake Baikal, Mikrobiologiya, 2004, vol. 74, no. 2, pp. 248-257.
13. Marmur, J., A Procedure for the Isolation of Deoxyribonucleic Acid from Microorganisms, J. Mol. Biol., 1961, vol. 3, pp. 208-218.
14. Rochelle, P.A., Ery, J.C., Parkes, R.J., and Weightman, A.J., DNA Extraction for 16S rRNA Gene Analysis To Determine Genetic Diversity in Deep Sediment Communities, FEMS Microbiol. Lett., 1992, vol. 100, pp. 59-66.
15. Sambrook, J., Frisch, E.F., and Maniatis, T., Molecular Cloning. A laboratory manual, Cold Spring Harbor: Cold Spring Harbor Lab., 1989, vol. 2, pp. 53-72.
16. Denisova, L.Ya., Bel'kova, N.L., Tulokhonov, I.I., and Zaichikov, E.F., Bacterial Diversity at Various Depths in the Southern Part of Lake Baikal as Revealed by 16S rDNA Sequencing, Mikrobiologiya, 1999, vol. 68, no. 4, pp. 547-556.
17. Bel'kova, N.L., Denisova, L.Ya., Manakova, E.N., Zaichikov, E.F., and Grachev, M.A., Species Diversity of Deep-Water Microorganisms of Lake Baikal as Revealed by 16S rRNA Sequences, Dokl. Akad. Nauk, 1996, vol. 348, no. 5, pp. 692-695.