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Volumn 120, Issue 14, 2004, Pages 6769-6778

Folding probabilities: A novel approach to folding transitions and the two-dimensional ising-model

Author keywords

[No Author keywords available]

Indexed keywords

FOLDING TRANSITIONS; ISING MODEL; MASTER EQUATIONS; TRANSITION RATES;

EID: 2342504637     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1667470     Document Type: Article
Times cited : (14)

References (30)
  • 7
  • 9
    • 2342487509 scopus 로고    scopus 로고
    • note
    • ij) than on the precise value of the transition rates.
  • 26
    • 2342628096 scopus 로고    scopus 로고
    • note
    • The fact that the formation of helices can be reasonably well characterized by the reaction coordinate ξ is a consequence from the one-dimensional nature of this structure. However, this approach cannot be easily generalized to the folding of more complex proteins.
  • 27
    • 2342452055 scopus 로고    scopus 로고
    • note
    • fold: We are able to achieve the same accuracy by analyzing only 466 runs instead of 9900 runs.
  • 28
    • 2342473438 scopus 로고    scopus 로고
    • note
    • This statement is supported by our analysis of a simple MD model for protein folding (data not shown). In these MD simulations, phase space is explored much more thoroughly and the various protein configurations are much more connected. As a consequence, the folding probability of the protein configurations is generally much smaller than in the MC model and only weakly depends on the order parameter.
  • 29
    • 3342992472 scopus 로고    scopus 로고
    • See, e.g., N. Hatano and D. R. Nelson, Phys. Rev. Lett. 77, 570 (1997); J. Feinberg and A. Zee, Nucl. Phys. B 501, 643 (1997).
    • (1997) Phys. Rev. Lett. , vol.77 , pp. 570
    • Hatano, N.1    Nelson, D.R.2
  • 30
    • 0031583545 scopus 로고    scopus 로고
    • See, e.g., N. Hatano and D. R. Nelson, Phys. Rev. Lett. 77, 570 (1997); J. Feinberg and A. Zee, Nucl. Phys. B 501, 643 (1997).
    • (1997) Nucl. Phys. B , vol.501 , pp. 643
    • Feinberg, J.1    Zee, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.