Selective isolation of bioactive soil actinomycetes belonging to the Streptomyces violaceusniger phenotypic cluster

Journal of Applied Microbiology

Volumn 96, Issue 5, 2004, Pages 973-981

  Hayakawa, M ^a   Yoshida, Y ^a,b   Iimura, Y ^a  

^a UNIVERSITY OF YAMANASHI   (Japan)

^b DAIICHI SANKYO CO   (Japan)

Author keywords

Antimicrobial and antitumour activities; Phenol method; Probabilistic identification; Selective isolation; Streptomyces violaceusniger cluster

Indexed keywords

BACTERIA; BIOMOLECULES; METABOLITES; SOIL SURVEYS; SOIL TESTING; SOILS;

ANTI-MICROBIAL ACTIVITY; ANTITUMOUR ACTIVITY; BIOACTIVES; PHENOL METHOD; PROBABILISTIC IDENTIFICATION; PROBABILISTICS; SELECTIVE ISOLATION; SOIL SAMPLE; STREPTOMYCES VIOLACEUSNIGE CLUSTER; STREPTOMYCETES;

PHENOLS;

AGAR; HUMIC ACID; PHENOL; VITAMIN;

ANTIMICROBIAL ACTIVITY;

ACTINOBACTERIA; ANTIMICROBIAL ACTIVITY; ANTINEOPLASTIC ACTIVITY; ARTICLE; BACTERIAL GROWTH; BACTERIAL SURVIVAL; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CARCINOMA CELL; COLON CARCINOMA; CONTROLLED STUDY; EVALUATION; FUNGUS; GRAM POSITIVE BACTERIUM; GROWTH INHIBITION; HUMAN; HUMAN CELL; INOCULATION; METABOLITE; NONHUMAN; PHENOTYPE; POPULATION; PROBABILITY; SAMPLE; SOIL; SOIL MICROFLORA; STREPTOMYCES VIOLACEUSNIGER; TECHNIQUE; TIME; YEAST;

ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); FUNGI; POSIBACTERIA; STREPTOMYCES; STREPTOMYCES VIOLACEUSNIGER; STREPTOMYCINEAE; UNCULTURED ACTINOMYCETE;

EID: 2342488089     PISSN: 13645072     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2672.2004.02230.x     Document Type: Article

References (55)

1. Anderson, A.S. and Wellington, E.M.H. (2001) The taxonomy of Streptomyces and related genera. International Journal of Systematic and Evolutionary Microbiology 51, 797-814.
2. Atalan, E., Manfio, G.P., Ward, A.C., Kroppenstedt, R.M. and Goodfellow, M. (2000) Biosystematic studies on novel streptomycetes from soil. Antonie Van Leeuwenhoek 77, 337-353.
3. Berdy, J. (1995) Are actinomycetes exhausted as source of secondary metabolites? In Proceedings of the 9th International Symposium on the Biology of Actinomycetes ed. Debabov, V.G., Dudnik, Y.V. and Danilenko, V.N. pp. 13-34. Moscow: All-Russia Scientific Research Institute for Genetics and Selection of Industrial Microorganisms.
4. Bull, A., Ward, A.C. and Goodfellow, M. (2000) Search and discovery strategies for biotechnology: the paradigm shift. Microbiology and Molecular Biology Reviews 64, 573-606.
5. Bushell, M.E. (1983) Search and discovery of novel microbial metabolites. Progress in Industrial Microbiology 17, 1-6.
6. Cross, T. (1989) Growth and examination of actinomycetes - some guidelines. In Bergey's Manual of Systematic Bacteriology, Vol. 4 ed. Williams, S.T., Sharpe, M.E. and Holt, J.P. pp. 2340-2343. Baltimore: Williams and Wilkins.
7. Goodfellow, M. (1992) The family Streptosporangiaceae. In The Prokaryotes ed. Balows, A., Trüper, H.G., Dworkin, M., Harder, W. and Schleifer K-H. pp. 1115-1138. Berlin: Springer Verlag.
8. Goodfellow, M. and Williams, E. (1986) New strategies for the selective isolation of industrially important bacteria. Biotechnology and Genetic Engineering Reviews 4, 213-262.
9. Hasegawa, T., Takizawa, M. and Tanida, S. (1983) A rapid analysis for chemical grouping of aerobic actinomycetes. Journal of General and Applied Microbiology 29, 319-322.
10. Hayakawa, M. and Nonomura, H. (1987) Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes. Journal of Fermentation Technology 65, 501-509.
11. Hayakawa, M. and Nonomura, H. (1989) A new method for the intensive isolation of actinomycetes from soil. Actinomycetologica 3, 95-104.
12. Hayakawa, M., Iino, S. and Nonomura, H. (1982) Heavy metal resistance and melanoid pigment production in the streptomycete flora of copper-polluted vineyard soils. Hakkokogaku 60, 1-9.
13. Hayakawa, M., Ishizawa, K. and Nonomura, H. (1988) Distribution of rare actinomycetes in Japanese soils. Journal of Fermentation Technology 66, 367-373.
14. Hayakawa, M., Sadakata, T., Kajiura, T. and Nonomura, H. (1991) New methods for the highly selective isolation of Micromonospora and Microbispora from soil. Journal of Fermentation and Bioengineering 72, 320-326.
15. Hayakawa, M., Momose, Y., Kajiura, T., Yamazaki, T., Tamura, T., Hatano, K. and Nonomura, H. (1995) A selective isolation method for Actinomadura viridis in soil. Journal of Fermentation and Bioengincering 79, 287-289.
16. Hayakawa, M., Takeuchi, T. and Yamazaki, T. (1996a) Combined use of trimethoprim with nalidixic acid for the selective isolation of actinomycetes from soil. Actinomycetologica 10, 80-90.
17. Hayakawa, M., Momose, Y., Yamazaki, T. and Nonomura, H. (1996b) A method for the selective isolation of Microtetraspora glauca and related four-spored actinomycetes from soil. Journal of Applied Bacteriology 80, 375-386.
18. Higashide, E. (1995) Screening of new antibiotics produced by actinomycetes and their production. Actinomycetologica 9, 75-82.
19. Iwasa, T., Yamamoto, H. and Shibata, M. (1970) Studies on validamycins, new antibiotics. I. Streptomyces hygroscopicus var. limonens nov. var., validamycin-producing organism. Journal of Antibiotics 23, 595-602.
20. Kondo, Y., Shomura, T., Ogawa, Y., Tsuruoka, T., Watanabe, H., Totsukawa, K., Suzuki, T., Moriyama, C. et al. (1973) Studies on a new antibiotic SF-1293. Science Reports of Meiji Seika Kaisha 13, 34-41.
21. Kurtböke, D.I., Chen, C.F. and Williams, S.T. (1992) Use of polyvalent phage for reduction of streptomycetes on soil dilution plates. Journal of Applied Bacteriology 72, 103-111.
22. Kusunoki, S., Ezaki, T., Tamesada, S., Hatanaka, Y., Asano, K., Hashimoto, Y. and Yabuchi, E. (1991) Application of calorimetric microdilution plate hybridization for rapid genetic identification of 22 Mycobacterium species. Journal of Clinical Microbiology 29, 1596-1603.
23. Labeda, D.P. (1987) Actinomycete taxonomy: generic characterization. Developments in Industrial Microbiology 28, 115-121.
24. Labeda, D.P. and Lyons, A.J. (1991) The Streptomyces violaceusniger cluster is heterogeneous in DNA relatedness among strains: emendation of the description of S. violaceusniger and Streptomyces hygroscopicus. International Journal of Systematic Bacteriology 41, 398-401.
25. Langham, C.D., Williams, S.T., Sneath, P.H.A. and Mortimer, A.M. (1989) New probability matrices for identification of Streptomyces. Journal of General Microbiology 135, 121-133.
26. Lazzarini, A., Cavaletti, L., Toppo, G. and Marinelli, F. (2000) Rare genera of actinomycetes as potential producers of new antibiotics. Antonie Van Leeuwenhoek 78, 399-405.
27. Lechevalier, H.A. (1989) A practical guide to generic identification of actinomycetes. In Bergey's Manual of Systematic Bacteriology, Vol. 4 ed. Williams, S.T., Sharpe, M.E. and Holt, J.P. pp. 2344-2347. Baltimore: Williams and Wilkins.
28. Lechevalier, M.P. and Lechevalier, H.A. (1970) Chemical composition as a criterion in the classification of aerobic actinomycetes. International Journal of Systematic Bacteriology 20, 435-443.
29. Long, P.F. and Wildman, H.G. (1992) Strategy for the use of pretreatments in the isolation of non-streptomycete actinomycetes from soil. Actinomycetes 4, 59-64.
30. Mayfield, C.I., Williams, S.T., Ruddick, S.M. and Hatfield, H.L. (1972) Studies on the ecology of actinomycetes in soil. IV. Observation on the form and growth of streptomycetes in soil. Soil Biology and Biochemistry 4, 79-91.
31. Miyadoh, S. (1993) Research on antibiotic screening in Japan over the last decade: a producing microorganism approach. Actinomycetologica 7, 100-106.
32. Okami, Y. and Hotta, K. (1988) Search and discovery of new antibiotics. In Actinomycetes in Biotechnology ed. Goodfellow, M., Williams, S.T. and Mordarski, M. pp. 33-67. London: Academic Press.
33. Okazaki, T., Ono, M., Aoki, A. and Fukuda, R. (1983) Milbemycins, a new family of macrolide antibiotics: producing organisms and its mutants. Journal of Antibiotics 36, 438-441.
34. Omura, S., Iwai, Y., Takahashi, Y., Sadakane, N., Nakagawa, A., Oiwa, H., Hasegawa, Y. and Ikai, T. (1979) Herbimycin, a new antibiotic produced by a strain of Streptomyces. Journal of Antibiotics 32, 255-261.
35. Osada, H. (1998) Actinomycetes: how fascinating microorganisms. Actinomycetologica 12, 85-88.
36. Otoguro, M., Hayakawa, M., Yamazaki, T. and Iimura, Y. (2001) An integrated method for the enrichment and selective isolation of Actinokineospora spp. in soil and plant litter. Journal of Applied Bacteriology 91, 118-130.
37. Philips, L., Wellington, E.M.M. and Rees, S.B. (1994) The distribution of antibiotic resistance patterns within streptomycetes and their use in secondary metabolite screening. Journal of Industrial Microbiology 13, 53-62.
38. Saito, H. and Miura, K. (1963) Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochimica et Biophysica Acta 72, 619-629.
39. Shirling, E.B. and Gottlieb, D. (1966) Methods for characterization of Streptomyces species. International Journal of Systematic Bacteriology 16, 313-340.
40. Shirling, E.B. and Gottlieb, D. (1968) Cooperative description of type cultures of Streptomyces. II. species description from the first study. International Journal of Systematic Bacteriology 18, 69-189.
41. Sneath, P.H.A. (1979) Basic program for identification of an unknown with presence-absence data against an identification matrix of percent positive characters. Computers and Geosciences 5, 195-213.
42. Suzuki, S. (2002) Development of New Isolation Methods for Rare Actinomycetes Using Gellan-gum Medium and their Application to Species Producing Bioactive Compounds. PhD thesis, University of Yamanashi, Yamanashi.
43. Takahashi, Y. and Omura, S. (2003) Isolation of new actinomycete strains for the screening of new bioactive compounds. Journal of General and Applied Microbiology 49, 141-154.
44. Tanaka, Y. and Omura, S. (1990) Metabolism and products of actinomycetes - an introduction. Actinomycetologica 4, 13-14.
45. Vezina, C., Kudelski, A. and Sehgal, S.N. (1975) Rapamycin, a new antifungal antibiotic. I. Taxonomy of the producing streptomycete and isolation of the active principle. Journal of Antibiotics 28, 721-726.
46. Vickers, J.C., Williams, S.T. and Ross, G.W. (1984) A taxonomic approach to selective isolation of streptomycetes from soil. In Biological, Biochemical, and Biomedical Aspects of Actinomycetes ed. Ortiz-Ortiz, L., Bojalil, L.F. and Yakoleff, V. pp. 553-561. London: Academic Press.
47. Waksman, S.A. and Henrici, A.T. (1943) The nomenclature and classification of the actinomycetes. Journal of Bacteriology 46, 337-341.
48. Watve, M.G., Tickoo, R., Jog, M.M. and Bhole, B.D. (2001) How many antibiotics are produced by the genus Streptomyces? Archive of Microbiology 176, 386-390.
49. Williams, S.T. and Davies, F.L. (1965) Use of antibiotics for selective isolation and enumeration of actinomycetes from soil. Journal of General Microbiology 38, 251-261.
50. Williams, S.T., Goodfellow, M., Alderson. G., Wellington, E.M.H., Sneath, P.H.A. and Sackin, M.J. (1983a) Numerical classification of Streptomyces and related genera. Journal of General Microbiology 129, 1743-1813.
51. Williams, S.T., Godfellow, M., Wellington, E.M.H., Vickers, J.C., Alderson, G., Sneath, P.H.A., Sackin, M.J. and Mortimer, A.M. (1983b) A probability matrix for identification of some streptomycetes. Journal of General Microbiology 129, 1815-1830.
52. Williams, S.T., Vickers, J.C. and Goodfellow, M. (1985) Application of new theoretical concepts to the identification of streptomycetes. In Computer-Assisted Bacterial Systematics ed. Goodfellow, M., Jones, D. and Priest, F.G. pp. 289-306. London: Academic Press.
53. Williams, S.T., Goodfellow, M. and Alderson, G. (1989) Genus Streptomyces Waksman and Henrici 1943. In Bergey's Manual of Systematic Bacteriology, Vol. 4 ed. Williams, S.T., Sharpe, M.E. and Holt, J.P. pp. 2452-2492. Baltimore: Williams and Wilkins.
54. Woodruff, H.B. (1999) Natural products from microorganisms: an odyssey revisited. Actinomycetologica 13, 58-67.
55. Yamamura, H., Hayakawa, M. and Iimura, Y. (2003) Application of sucrose-gradient centrifugation for selective isolation of Nocardia spp. from soil. Journal of Applied Microbiology 95, 677-685.