Characterization of microsatellite markers in Homarus (Crustacea, Decapoda)

Molecular Marine Biology and Biotechnology

Volumn 5, Issue 3, 1996, Pages 230-238

  Tam, Yan Kit ^a   Kornfield, Irv ^a  

^a UNIVERSITY OF MAINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MICROSATELLITE DNA;

ANIMAL; ARTICLE; FEMALE; GENE FREQUENCY; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENETICS; NEPHROPIDAE; UNITED STATES;

ANIMALS; DNA; FEMALE; GENE FREQUENCY; MAINE; MICROSATELLITE REPEATS; NEPHROPIDAE; POLYMORPHISM, GENETIC; VARIATION (GENETICS);

EID: 2342474005     PISSN: 10536426     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (38)

1. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A., and Struhl, K. (eds.). (1989). Short Protocols in Molecular Biology. New York, NY: John Wiley & Sons.
2. Bowcock, A.M., Ruiz-Linares, A., Tomfohrde, J., Minch, E., Kidd, J.R., and Cavalli-Sforza, L.L. (1994). High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368:455-457.
3. Bruford, M.W., and Wayne, R.K. (1993). Microsatellites and their application to population genetic studies. Curr Opin Genet Dev 3:939-943.
4. Cornall, R.J., Aitman, T.J., Hearne, C.M., and Todd, J.A. (1991). The generation of a library of PCR-analyzed microsatellite variants for genetic mapping of the mouse genome. Genomics 10:874-881.
5. Edwards, A., Hammond, H.A., Jin, L., Caskey, C.T., and Chakraborty, R. (1992). Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups. Genomics 12:241-253.
6. n microsatellites: a new class of genetic markers for Salmo trutta L. (brown trout). Heredity 71:488-496.
7. Evans, J.D. (1993). Parentage analyses in ant colonies using simple sequence repeat loci. Mol Ecol 2:393-397.
8. FitzSimmons, N.N., Moritz, C., and Moore, S.S. (1995). Conservation and dynamics of microsatellite loci over 300 million years of marine turtle evolution. Mol Biol Evol 12:432-440.
9. Harding, G., Kenchington, E., and Zheng, Z. (1993). Morphometrics of American lobster (Homarus americanus) larvae in relation to stock determinations in the Maritimes, Canada. Can J Fish Aquat Sci 50:43-52.
10. Hedgecock, D., Nelson, K., Shleser, R.A., and Tracey, M.L. (1975). Biochemical genetics of lobsters (Homarus): II. Inheritance of allozymes in H. americanus. J Hered 66:114-118.
11. Hedgecock, D., Nelson, K., Simons, J., and Shleser, R. (1977). Genie similarity of American and European species of the lobster Homarus. Biol Bull 152:41-50.
12. Hughes, C.R., and Queller, D.C. (1993). Detection of highly polymorphic microsatellite loci in a species with little allozyme polymorphism. Mol Ecol 2:131-137.
13. Kimura, M., and Crow, J.F. (1964). The number of alleles that can be maintained in a finite population. Genetics 49:725-738.
14. Kornfield, I., and Moran, P. (1990). Genetics of population differentiation in lobsters. In: Life History of the American Lobster, Kornfield, I. (ed.). Orono, Maine: Lobster Institute, p23-24.
15. Kornfield,I., Williams, A.B., and Steneck, R.S. (1995). Assignment of Homarus capensis (Herbst, 1792), the Cape lobster of South Africa, to the new genus Homarinus (Decapoda: Nephropidae). Fish Bull 93:97-102.
16. Lincoln, S., Daly, M., and Lander E. (1991). PRIMER Version 0.5. Cambridge, Mass.: MIT Center for Genomic Research, Whitehead Institute for Biomedical Research.
17. Machugh, D.E., Loftus, R.T., Bradley, D.G., Sharp, P.M., and Cunningham, P. (1994). Microsatellite DNA variation within and among European cattle breeds. Proc R Soc Land B 256:25-31.
18. Moore, S.S., Sargeant, L.L., King, T.J., Matticks, S., Georges, M., and Hetzel, D.J.S. (1991). The conservation of dinucleotide microsatellites among mammalian genome allows the use of heterologous PCR primer pairs in closely related species. Genomics 10:654-660.
19. Moran, C. (1993). Microsatellite repeats in pigs (Sus domestica) and chicken (Callus domesticus) genome. J Hered 84:274-280.
20. Naciri, Y., Vigouroux, Y., Dallas, J., Desmarais, E., Delsert, C., and Bonhomme, F. (1995). Identification and inheritance of (GA/TC)n and (AC/GT)n repeats in the European flat oyster Ostrea edulis (L.). Mol Mar Biol Biotechnol 4:83-89.
21. Paetkau, D., and Strobeck, C. (1994). Microsatellite analysis of genetic variation in black bear populations. Mol Ecol 3:489-195.
22. Pemberton, J.M., Slate, J., Bancroft, D.R., and Barrett, J.A. (1995). Nonamplifying alleles at microsatellite loci: a caution for parentage and population studies. Mol Ecol 4:249-252.
23. Pépin, L., Amigues, Y., Lépingle, A., Berthier, J.L., Bensaid, A., and Vaiman, D. (1995). Sequence conservation of microsatellites between Bos taurus (cattle), Copra hircus (goat) and related species. Examples of use in parentage testing and phylogeny analysis. Heredity 74:53-61.
24. Queller, D.C., Strassmann, J.E., and Hughes, C.R. (1993). Microsatellites and kinship. Trends Ecol Evol 8:285-288.
25. Raymond, M., and Rousset, F. (1995). GENEPOP (version 1.2): A population genetics software for exact tests and ecumenicism. J Hered 86:248-249.
26. Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
27. Sanger, F., Nicklen, S., and Coulson, A.R. (1977). DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463-5467.
28. Schlötterer, C., Amos, B., and Tautz, D. (1991). Conservation of polymorphic simple sequence loci in cetacean species. Nature 354:63-65.
29. Selander, R.K. (1970). Behavior and genetic variation in natural populations. Am Zool 10:53-66.
30. Shaklee, J.B. (1983). The utilization of isozymes as gene markers in fisheries management and conservation. In: Isozymes: Current Topics in Biological and Medical Research. Vol II: Medical and Other Applications. New York, NY: Alan R. Liss, p 213-247.
31. Sokal, R.R., and Rohlf F.J. (1995). Biometry, 3rd ed. New York, NY: W.H. Freeman and Company.
32. Swofford, D.L., and Selander, R.B. (1981). BIOSYS-1: a FORTRAN program for the comprehensive analysis of electrophoretic data in population genetics and systematics. J Hered 72:281-283.
33. Tautz, D. (1989). Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res 17:6463-6471.
34. Tautz, D., and Renz, M. (1984). Simple sequences are ubiquitous repetitive components of eukaryote genome. Nucleic Acids Res 12:4127-4138.
35. Tracey, M.L., Nelson, K., Hedgecock, D., Shleser, R.A., and Pressick, M.L. (1975). Biochemical genetics of lobsters: genetic variation and the structure of American lobster (Homarus americanus) populations. J Fish Res Board Can 32:2091-2101.
36. Walsh, S.P., Metzger, D.A., and Higuchi, R. (1991). Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10:506-513.
37. Weber, J.L., and May, P.E. (1989). Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet 44:388-396.
38. Zaykin, D., and Pudovkin, A. (1993). Two programs to estimate chi-square values using pseudo-probability tests. J Hered 84:152.