메뉴 건너뛰기




Volumn 53, Issue SUPPL. 1, 2004, Pages

Confocal Stereology and Image Analysis: Methods for Estimating Geometrical Characteristics of Cells and Tissues from Three-Dimensional Confocal Images

Author keywords

Confocal microscopy; Image analysis; Stereology; Three dimensional reconstructions

Indexed keywords

GREEN FLUORESCENT PROTEIN;

EID: 2342456315     PISSN: 08628408     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review
Times cited : (25)

References (50)
  • 3
    • 0004403155 scopus 로고
    • Computer aided three-dimensional reconstruction from serial section images
    • Häder DP (ed), CRC Press, Boca Raton, Ann Arbor, London
    • BABA N: Computer aided three-dimensional reconstruction from serial section images. In: Image Analysis in Biology. HÄDER DP (ed), CRC Press, Boca Raton, Ann Arbor, London, 1991, pp 251-270.
    • (1991) Image Analysis in Biology , pp. 251-270
    • Baba, N.1
  • 4
    • 0024348162 scopus 로고
    • On the precision of systematic sampling: A review of Matheron's transitive methods
    • CRUZ-ORIVE, LM: On the precision of systematic sampling: a review of Matheron's transitive methods. J Microsc 153: 315-333, 1989.
    • (1989) J Microsc , vol.153 , pp. 315-333
    • Cruz-Orive, L.M.1
  • 5
    • 0000404427 scopus 로고
    • Systematic sampling in stereology
    • CRUZ-ORIVE LM: Systematic sampling in stereology. Bull Int Statistic Inst 55: 451-468, 1993.
    • (1993) Bull Int Statistic Inst , vol.55 , pp. 451-468
    • Cruz-Orive, L.M.1
  • 6
    • 0030994189 scopus 로고    scopus 로고
    • Stereology of single objects
    • CRUZ-ORIVE LM: Stereology of single objects. J Microsc 186: 93-107, 1997.
    • (1997) J Microsc , vol.186 , pp. 93-107
    • Cruz-Orive, L.M.1
  • 7
    • 0032968246 scopus 로고    scopus 로고
    • Precision of Cavalieri sections and slices with local errors
    • CRUZ-ORIVE LM: Precision of Cavalieri sections and slices with local errors. J Microsc 193: 182-198, 1999.
    • (1999) J Microsc , vol.193 , pp. 182-198
    • Cruz-Orive, L.M.1
  • 8
    • 0025342635 scopus 로고
    • Two-photon laser scanning fluorescence microscopy
    • DENK W, STRICKLER JH, WEBB WW: Two-photon laser scanning fluorescence microscopy. Science 248: 73-76, 1990.
    • (1990) Science , vol.248 , pp. 73-76
    • Denk, W.1    Strickler, J.H.2    Webb, W.W.3
  • 10
    • 0035693652 scopus 로고    scopus 로고
    • Tissue shrinkage and unbiased stereological estimation of particle number and size
    • DORPH-PETERSEN KA, NYENGAARD JR, GUNDERSEN HJG: Tissue shrinkage and unbiased stereological estimation of particle number and size. J Microsc 204: 232-246, 2001.
    • (2001) J Microsc , vol.204 , pp. 232-246
    • Dorph-Petersen, K.A.1    Nyengaard, J.R.2    Gundersen, H.J.G.3
  • 11
    • 0028298724 scopus 로고
    • Volume and surface area measurement of viable chondrocytes in situ using geometric modelling of serial confocal sections
    • GUILAK F: Volume and surface area measurement of viable chondrocytes in situ using geometric modelling of serial confocal sections. J Microsc 173: 245-256, 1994.
    • (1994) J Microsc , vol.173 , pp. 245-256
    • Guilak, F.1
  • 12
    • 84985187820 scopus 로고
    • Stereology of arbitrary particles. A review of unbiased number and size estimators and the presentation of some new ones, in memory of William R. Thompson
    • GUNDERSEN HJG: Stereology of arbitrary particles. A review of unbiased number and size estimators and the presentation of some new ones, in memory of William R. Thompson. J Microsc 143: 3-45, 1986.
    • (1986) J Microsc , vol.143 , pp. 3-45
    • Gundersen, H.J.G.1
  • 13
    • 84985280160 scopus 로고
    • The efficiency of systematic sampling in stereology and its prediction
    • GUNDERSEN HJG, JENSEN EB: The efficiency of systematic sampling in stereology and its prediction. J Microsc 147: 229-263, 1987.
    • (1987) J Microsc , vol.147 , pp. 229-263
    • Gundersen, H.J.G.1    Jensen, E.B.2
  • 14
    • 0033045425 scopus 로고    scopus 로고
    • The efficiency of systematic sampling in stereology-reconsidered
    • GUNDERSEN HJG, JENSEN EBV, KIÊU K, NIELSEN J: The efficiency of systematic sampling in stereology-reconsidered. J Microsc 193: 199-211, 1999.
    • (1999) J Microsc , vol.193 , pp. 199-211
    • Gundersen, H.J.G.1    Jensen, E.B.V.2    Kiêu, K.3    Nielsen, J.4
  • 15
    • 0024948380 scopus 로고
    • Precision of surface area estimation using spatial grids
    • HAHN U, SANDAU K: Precision of surface area estimation using spatial grids. Acta Stereol 8: 425-430, 1989.
    • (1989) Acta Stereol , vol.8 , pp. 425-430
    • Hahn, U.1    Sandau, K.2
  • 17
    • 0026502470 scopus 로고
    • Measuring the surface area of a cell by the method of the spatial grid with a CSLM - A demonstration
    • HOWARD CV, SANDAU K: Measuring the surface area of a cell by the method of the spatial grid with a CSLM - a demonstration. J Microsc 165: 183-188, 1992.
    • (1992) J Microsc , vol.165 , pp. 183-188
    • Howard, C.V.1    Sandau, K.2
  • 18
    • 0021826903 scopus 로고
    • Unbiased estimation of particle density in the tandem scanning reflected light microscope
    • HOWARD CV, REID S, BADDELEY A, BOYDE A: Unbiased estimation of particle density in the tandem scanning reflected light microscope. J Microsc 138: 203-212, 1985.
    • (1985) J Microsc , vol.138 , pp. 203-212
    • Howard, C.V.1    Reid, S.2    Baddeley, A.3    Boyde, A.4
  • 19
    • 0000165682 scopus 로고    scopus 로고
    • Errors of spatial grids estimators of volume and surface area
    • JANÁČEK J: Errors of spatial grids estimators of volume and surface area. Acta Stereol 18: 389-396, 1999.
    • (1999) Acta Stereol , vol.18 , pp. 389-396
    • Janáček, J.1
  • 20
    • 0031981797 scopus 로고    scopus 로고
    • Spatial arrangement of fetal placental capillaries in terminal villi: A study using confocal microscopy
    • JIRKOVSKÁ M, KUBÍNOVÁ L, KREKULE I, HACH P: Spatial arrangement of fetal placental capillaries in terminal villi: a study using confocal microscopy. Anat Embryol 197: 263-272, 1998.
    • (1998) Anat Embryol , vol.197 , pp. 263-272
    • Jirkovská, M.1    Kubínová, L.2    Krekule, I.3    Hach, P.4
  • 21
    • 0036318663 scopus 로고    scopus 로고
    • Topological properties and spatial organization of villous capillaries in normal and diabetic placentas
    • JIRKOVSKÁ M, KUBÍNOVÁ L, JANÁČEK J, MORAVCOVÁ M, KREJČÍ V, KAREN P: Topological properties and spatial organization of villous capillaries in normal and diabetic placentas. J Vasc Res 39: 268-278, 2002.
    • (2002) J Vasc Res , vol.39 , pp. 268-278
    • Jirkovská, M.1    Kubínová, L.2    Janáček, J.3    Moravcová, M.4    Krejčí, V.5    Karen, P.6
  • 22
    • 0242581357 scopus 로고    scopus 로고
    • Three-dimensional computer reconstruction of large tissue volumes based on composing series of high-resolution confocal images by GlueMRC and LinkMRC software
    • KAREN P, JIRKOVSKÁ M, TOMORI Z, DEMJÉNOVÁ E, JANÁČEK J, KUBÍNOVÁ L: Three-dimensional computer reconstruction of large tissue volumes based on composing series of high-resolution confocal images by GlueMRC and LinkMRC software. Microsc Res Tech 62: 415-422, 2003.
    • (2003) Microsc Res Tech , vol.62 , pp. 415-422
    • Karen, P.1    Jirkovská, M.2    Tomori, Z.3    Demjénová, E.4    Janáček, J.5    Kubínová, L.6
  • 24
    • 0031850994 scopus 로고    scopus 로고
    • Estimating surface area by the isotropic fakir method from thick slices cut in an arbitrary direction
    • KUBÍNOVÁ L, JANÁČEK J: Estimating surface area by the isotropic fakir method from thick slices cut in an arbitrary direction. J Microsc 191: 201-211, 1998.
    • (1998) J Microsc , vol.191 , pp. 201-211
    • Kubínová, L.1    Janáček, J.2
  • 25
    • 0035877194 scopus 로고    scopus 로고
    • Confocal microscopy and stereology: Estimating volume, number, surface area and length by virtual test probes applied to three-dimensional images
    • KUBÍNOVÁ L, JANÁČEK J: Confocal microscopy and stereology: Estimating volume, number, surface area and length by virtual test probes applied to three-dimensional images. Microsc Res Tech 53: 425-435, 2001.
    • (2001) Microsc Res Tech , vol.53 , pp. 425-435
    • Kubínová, L.1    Janáček, J.2
  • 26
    • 24844471453 scopus 로고
    • The role of stereology, confocal microscopy and 3-D reconstructions in morphometrical analysis of 3-D biological structures
    • KUBÍNOVÁ L, KAREN P, INDRA M, JIRKOVSKÁ M, PALOVSKÝ R, KREKULE I: The role of stereology, confocal microscopy and 3-D reconstructions in morphometrical analysis of 3-D biological structures. Biomed Tech 40: 196-197, 1995.
    • (1995) Biomed Tech , vol.40 , pp. 196-197
    • Kubínová, L.1    Karen, P.2    Indra, M.3    Jirkovská, M.4    Palovský, R.5    Krekule, I.6
  • 27
    • 2342491164 scopus 로고    scopus 로고
    • Stereology and confocal microscopy: Application to the study of placental terminal villus
    • KUBÍNOVÁ L, JIRKOVSKÁ M, HACH P: Stereology and confocal microscopy: Application to the study of placental terminal villus. Acta Stereol 15: 153-158, 1996.
    • (1996) Acta Stereol , vol.15 , pp. 153-158
    • Kubínová, L.1    Jirkovská, M.2    Hach, P.3
  • 28
    • 0345161717 scopus 로고    scopus 로고
    • Comparison of several digital and stereological methods for estimating surface area and volume of cells studied by confocal microscopy
    • KUBÍNOVÁ L, JANÁČEK J, GUILAK F, OPATRNÝ Z: Comparison of several digital and stereological methods for estimating surface area and volume of cells studied by confocal microscopy. Cytometry 36: 85-95, 1999.
    • (1999) Cytometry , vol.36 , pp. 85-95
    • Kubínová, L.1    Janáček, J.2    Guilak, F.3    Opatrný, Z.4
  • 29
    • 0035190001 scopus 로고    scopus 로고
    • Three-dimensional study of the capillary supply of skeletal muscle fibers using confocal microscopy
    • KUBÍNOVÁ L, JANÁČEK J, RIBARIČ S, ČEBAŠEK V, ERŽEN I: Three-dimensional study of the capillary supply of skeletal muscle fibers using confocal microscopy. J Musc Res Cell Motil 22: 217-227, 2001.
    • (2001) J Musc Res Cell Motil , vol.22 , pp. 217-227
    • Kubínová, L.1    Janáček, J.2    Ribarič, S.3    Čebašek, V.4    Eržen, I.5
  • 30
    • 0038023724 scopus 로고    scopus 로고
    • Stereological methods for estimating geometrical parameters of microscopical structure studied by three-dimensional microscopical techniques
    • Diaspro A (ed), Wiley-Liss, New York
    • KUBÍNOVÁ L, JANÁČEK J, KREKULE I: Stereological methods for estimating geometrical parameters of microscopical structure studied by three-dimensional microscopical techniques. In: Confocal and Two-photon Microscopy. DIASPRO A (ed), Wiley-Liss, New York, 2002, pp 299-332.
    • (2002) Confocal and Two-photon Microscopy , pp. 299-332
    • Kubínová, L.1    Janáček, J.2    Krekule, I.3
  • 32
    • 0031661268 scopus 로고    scopus 로고
    • Global spatial sampling with isotropic virtual planes: Estimators of length density and total length in thick, arbitrarily orientated sections
    • LARSEN JO, GUNDERSEN HJG, NIELSEN J: Global spatial sampling with isotropic virtual planes: estimators of length density and total length in thick, arbitrarily orientated sections. J Microsc 191: 238-248, 1998.
    • (1998) J Microsc , vol.191 , pp. 238-248
    • Larsen, J.O.1    Gundersen, H.J.G.2    Nielsen, J.3
  • 33
    • 0023381475 scopus 로고
    • Marching cubes: A high resolution 3D surface construction algorithm
    • LORENSEN WE, CLINE HE: Marching cubes: a high resolution 3D surface construction algorithm. Comp Graph 21: 163-169, 1987.
    • (1987) Comp Graph , vol.21 , pp. 163-169
    • Lorensen, W.E.1    Cline, H.E.2
  • 35
    • 84985274513 scopus 로고
    • Orthogonal triplet probes; an efficient method for unbiased estimation of length and surface of objects with unknown orientation in space
    • MATTFELDT T, MÖBIUS HJ, MALL G: Orthogonal triplet probes; an efficient method for unbiased estimation of length and surface of objects with unknown orientation in space. J Microsc 139: 279-289, 1985.
    • (1985) J Microsc , vol.139 , pp. 279-289
    • Mattfeldt, T.1    Möbius, H.J.2    Mall, G.3
  • 36
    • 0026584381 scopus 로고
    • Mathematical morphology: From two dimensions to three dimensions
    • MEYER F: Mathematical morphology: from two dimensions to three dimensions. J Microsc 165: 5-28, 1992.
    • (1992) J Microsc , vol.165 , pp. 5-28
    • Meyer, F.1
  • 37
    • 0033230845 scopus 로고    scopus 로고
    • Fundamental of two-photon microscopy
    • NAKAMURA O: Fundamental of two-photon microscopy. Microsc Res Tech 47: 165-171, 1999.
    • (1999) Microsc Res Tech , vol.47 , pp. 165-171
    • Nakamura, O.1
  • 38
    • 0030244740 scopus 로고    scopus 로고
    • 3D reconstruction of complex polyhedral shapes from contours using a simplified generalized Voronoi diagram
    • Rossignac J, Sillion F (eds), Blackwell Publishers
    • OLIVA JM, PERRIN M, COQUILLART S: 3D reconstruction of complex polyhedral shapes from contours using a simplified generalized Voronoi diagram. In: Eurographics 96. ROSSIGNAC J, SILLION F (eds), Blackwell Publishers, 1996, pp 397-408.
    • (1996) Eurographics 96 , pp. 397-408
    • Oliva, J.M.1    Perrin, M.2    Coquillart, S.3
  • 41
    • 0034464348 scopus 로고    scopus 로고
    • Statistical evaluation of colocalization patterns in immunogold labeling experiments
    • PHILIMONENKO AA, JANÁČEK J, HOZÁK P: Statistical evaluation of colocalization patterns in immunogold labeling experiments. J Struct Biol 132: 201-210, 2000.
    • (2000) J Struct Biol , vol.132 , pp. 201-210
    • Philimonenko, A.A.1    Janáček, J.2    Hozák, P.3
  • 42
    • 0024333855 scopus 로고
    • Image analysis in histology - Hope, disillusion, and hope again
    • RIGAUT JP: Image analysis in histology - hope, disillusion, and hope again. Acta Stereol 8: 3-12, 1989.
    • (1989) Acta Stereol , vol.8 , pp. 3-12
    • Rigaut, J.P.1
  • 44
    • 0038305440 scopus 로고    scopus 로고
    • Improving methodological strategies for satellite cells counting in human muscle during aging
    • SAJKO Š, KUBÍNOVÁ L, KREFT M, DAHMANE R, WERNIG A, ERŽEN I: Improving methodological strategies for satellite cells counting in human muscle during aging. Image Anal Stereol 21: 7-12, 2002.
    • (2002) Image Anal Stereol , vol.21 , pp. 7-12
    • Sajko, Š.1    Kubínová, L.2    Kreft, M.3    Dahmane, R.4    Wernig, A.5    Eržen, I.6
  • 47
    • 0028085381 scopus 로고
    • Deconvolution in 3-D optical microscopy
    • SHAW P: Deconvolution in 3-D optical microscopy. Histochem J 26: 687-94, 1994.
    • (1994) Histochem J , vol.26 , pp. 687-694
    • Shaw, P.1
  • 48
    • 0030895212 scopus 로고    scopus 로고
    • Effects of specimen refractive index on confocal imaging
    • SHEPPARD CJR, TÖRÖK P: Effects of specimen refractive index on confocal imaging. J Microsc 185: 366-374, 1997.
    • (1997) J Microsc , vol.185 , pp. 366-374
    • Sheppard, C.J.R.1    Török, P.2
  • 49
    • 0031021713 scopus 로고    scopus 로고
    • In vivo dendritic calcium dynamics in neocortical pyramidal neurons
    • SVOBODA K, DENK W, KLEINFELD D, TANK DW: In vivo dendritic calcium dynamics in neocortical pyramidal neurons. Nature 385: 161-165, 1997.
    • (1997) Nature , vol.385 , pp. 161-165
    • Svoboda, K.1    Denk, W.2    Kleinfeld, D.3    Tank, D.W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.