Resolution enhanced homonuclear carbon decoupled triple resonance experiments for unambiguous RNA structural characterization

Journal of Biomolecular NMR

Volumn 32, Issue 2, 2005, Pages 129-139

  Dayie, Kwaku T ^a,b,c  

^a LERNER RESEARCH INSTITUTE   (United States)

^b Cleveland Center for Structural Biology   (United States)

^c CASE WESTERN RESERVE UNIVERSITY   (United States)

Author keywords

Adiabatic pulses; Band selective homonuclear decoupling; Heteronuclear cross polarization; RNA NMR assignment strategy; Scalar coupling

Indexed keywords

CARBON; NITROGEN; PLANT RNA; RNA; SHORT HAIRPIN RNA;

ARTICLE; BROWN ALGA; CORRELATION ANALYSIS; IMAGE ANALYSIS; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; NUCLEAR OVERHAUSER EFFECT; PLANT GENETICS; POLARIZATION; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTON NUCLEAR MAGNETIC RESONANCE; SENSITIVITY ANALYSIS; SIGNAL NOISE RATIO; STRUCTURE ANALYSIS; THREE DIMENSIONAL IMAGING;

CARBON ISOTOPES; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; RIBONUCLEOTIDES; RNA;

PYLAIELLA LITTORALIS;

EID: 23344446294     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10858-005-5093-6     Document Type: Article

References (58)

1. M.M. Baklanov L.N. Golikova and E.G. Malygin 1996 Nucl. Acid Res. 24 3659-3660 10.1093/nar/24.18.3659
2. R.T. Batey J.L. Battiste and J.R. Williamson 1995 Methods Enzymol. 261 300-322 8569501
3. A. Bax A.F. Mehlkopf and J. Smidt 1979 J. Magn. Reson. 35 167-169
4. A. Bax and R. Freeman 1981 J. Magn. Reson. 44 542-561
5. D.W. Bearden and L.R. Brown 1989 Chem. Phys. Lett. 163 432-436 10.1016/ 0009-2614(89)85163-2
6. R.D. Bertrand W.B. Moniz A.N. Garroway and G.C. Chingas 1978 J. Am. Chem. Soc. 100 5227-5229 10.1021/ja00484a063
7. J. Boisbouvier B. Brutscher A. Pardi D. Marion and J.-P. Simorre 2000 J. Am. Chem. Soc. 122 6779-6780 10.1021/ja000976b
8. L. Braunschweiler and R.R. Ernst 1983 J. Magn. Reson. 53 521-528
9. B. Brutscher J. Boisbouvier A. Pardi D. Marion and J.P Simorre 1998 J. Am. Chem. Soc. 120 11845-11851 10.1021/ja982853l
10. B. Brutscher J. Boisbouvier E. Kupce C. Tisne F. Dardel D. Marion and J.P. Simorre 2001 J. Biomol. NMR 19 141-151 10.1023/A:1008340210079 11256810
11. M. Costa J.M. Fontaine S. Loiseaux-de Goer and F. Michel 1997 J. Mol. Biol. 274 353-364 10.1006/jmbi.1997.1416 9405145
12. G.M. Clore A. Bax P.C. Driscoll P.T. Wingfield and A.M. Gronenborn 1990 Biochemistry 29 8172-8184 10.1021/bi00487a027 2261471
13. J. Cromsigt B. van Buuren J. Schleucher and S. Wijmenga 2001 Methods Enzymol. 338 371-399 11460559
14. K.T. Dayie T.J. Tolbert and J.R. Williamson 1998 J. Magn. Reson. 130 97-101 10.1006/jmre.1997.1286 9469903
15. F. Delaglio S. Grzesiek G.W. Vuister G. Zhu J. Pfeifer and A. Bax 1995 J. Biomol. NMR 6 277-293 10.1007/BF00197809 8520220
16. T. Dieckmann and J. Feigon 1994 Curr. Opin. Struct. Biol. 4 745-749 10.1016/S0959-440X(94)90174-0
17. T. Dieckmann and J. Feigon 1997 J. Biomol. NMR 9 259-272 10.1023/ A:1018622708674 9204555
18. A.J. Dingley and S. Grzesiek 1998 J. Am. Chem. Soc. 120 8293-8297 10.1021/ja981513x
19. M. Ebrahimi P. Rossi C. Rogers and G.S. Harbison 2001 J. Magn. Reson. 150 1-9 10.1006/jmre.2001.2314 11330976
20. J. Feigon W. Leupin W.A. Denny and D.R. Kerns 1983 Biochemistry 22 5943-5951 10.1021/bi00294a038 6661418
21. 5S.W. Fesik H.L. Eaton E.T. Olejniczak E.R.P. Zuiderweg L.P. McIntosh and F.W. Dahlquist 1990 J. Am. Chem. Soc. 112 886-888 10.1021/ja00158a069
22. R. Fiala F. Jiang and D.J. Patel 1996 J. Am. Chem. Soc. 118 689-690 10.1021/ja9533656
23. B. Furtig C. Richter J. Wöhnert and H. Schwalbe 2003 Chembiochem. 4 936-962 10.1002/cbic.200300700 14523911
24. T.D. Goddard and D.G. Kneller 2004 SPARKY 3, University of California San Francisco
25. S. Grzesiek and A. Bax 1992 J. Magn. Reson. 96 432-440
26. H.A. Heus S.S. Wijmenga F.J. Van De Ven and C.W. Hilbers 1994 J. Am. Chem. Soc. 116 4983-4984 10.1021/ja00090a052
27. W. Hu Y.Q. Gosser W. Xu and D.J. Patel 2001 J. Biomol. NMR 20 167-172 10.1023/A:1011226415824 11495247
28. J.H. Ippel S.S. Wijmenga R. de Jong H.A. Heus C.W., Hibers E., de Vroom G.A. van der Marel and J.H. van Boom 1996 Magn. Reson. Chem. 34 S156-S176 10.1002/ (SICI)1097-458X(199612)34:133.0.CO;2-U
29. C. Kao M. Zheng and S. Rudisser 1999 RNA 5 1268-1272 10.1017/ S1355838299991033 10496227
30. L.E. Kay M. Ikura and A. Bax 1990 J. Am. Chem. Soc. 112 888-889 10.1021/ ja00158a070
31. E. Kupce and G. Wagner 1996 J. Magn. Reson. B. 110 309-312 10.1006/ jmrb.1996.0048 8867448
32. P.J. Lukavsky and J.D. Puglisi 2001 Methods 25 316-332 10.1006/ meth.2001.1244 11860286
33. B. Luy and J.P. Marino 2000 J. Am. Chem. Soc. 122 8095-8096 10.1021/ ja0000910
34. J.P. Marino H. Schwalbe C. Anklin W. Bermel D.M. Crothers and C. Griesinger 1994 J. Am. Chem. Soc. 116 6472-6473 10.1021/ja00093a073
35. H. Matsuo E. Kupce and G. Wagner 1996 J. Magn. Reson. B 113 190-194 10.1006/jmrb.1996.0175 8948143
36. A. Meissner and O.W. Sorensen 1999 J. Magn. Reson. 139 439-442 10.1006/ jmre.1999.1788 10423383
37. J.F. Milligan D.R. Groebe G.W. Witherell and O.C. Uhlenbeck 1987 Nucl. Acid Res. 15 8783-8798
38. J.F. Milligan and O.C. Uhlenbeck 1989 Methods Enzymol. 180 51-62 2482430
39. L. Mueller and R.R. Ernst 1979 Mol. Phys. 38 963-992
40. E.P. Nikonowicz and A. Pardi 1993 J. Mol. Biol. 232 1141-1156 10.1006/ jmbi.1993.1466 8396648
41. E. O'Neil-Cabello D.L. Bryce E.P. Nikonowicz and A. Bax 2004a J. Am. Chem. Soc. 126 66-67
42. E. O'Neil-Cabello Z. Wu D.L. Bryce E.P. Nikonowicz and A. Bax 2004 J. Biomol. NMR 30 61-70 10.1023/B:JNMR.0000042952.66982.38 15452435
43. A. Pardi 1995 Methods Enzymol. 261 350-380 8569503
44. S.M. Pascal D.R. Muhandiram T. Yamazaki J.D. Forman-Kay and L.E. Kay 1994 J. Magn. Reson. B 103 197-201 10.1006/jmrb.1994.1031
45. K. Pervushin R. Riek G. Wider and K. Wuthrich 1997 Proc. Natl. Acad. Sci. USA. 94 12366-12371 10.1073/pnas.94.23.12366 9356455
46. M. Piotto V. Saudek and V. Sklenar 1992 J. Biomol. NMR 2 661-665 1490109
47. C.A. Podlasek A.S. Wayne I. Carmichael M. Shang B. Basu and A.S. Serianni 1996 J. Am. Chem. Soc. 118 1413-1425 10.1021/ja9519647
48. J.D. Puglisi and J.R. Wyatt 1995 Methods Enzymol. 261 323-350 8569502
49. M. Rance J.P. Loria and A.G. Palmer 3rd 1999 J. Magn. Reson. 136 92-101 10.1006/jmre.1998.1626 9887294
50. R.M. Scheek N. Russo R. Boelens and R. Kaptein 1983 J. Am Chem. Soc. 105 2914-2916 10.1021/ja00347a075
51. R.K. Sigel D.G. Sashital D.L. Abramovitz A.G. Palmer III S.E. Butcher and A.M. Pyle 2004 Nat. Struct. Mol. Biol. 11 87-192 10.1038/nsmb717
52. B. Simon K. Zanier and M. Sattler 2001 J. Biomol. NMR 20 173-176 10.1023/ A:1011214914452 11495248
53. J.P. Simorre G.R. Zimmermann A. Pardi B.T. Farmer 2nd and L. Mueller 1995 J. Biomol. NMR 6 427-432 10.1007/BF00197641 8563469
54. F.J.M. van de Ven and M.E.P. Philippens 1992 J. Magn. Reson. 97 637-644
55. G. Varani F. Aboul-ela and F.H.T. Allain 1996 Prog. NMR Spectrosc. 29 51-127 10.1016/0079-6565(96)01028-X
56. S.S. Wijmenga and B.N.M. van Buuren 1998 Prog. NMR Spectrosc. 32 287-387 10.1016/S0079-6565(97)00023-X
57. J. Wöhnert M. Gorlach and H. Schwalbe 2003 J. Biomol. NMR. 26 79-83 10.1023/A:1023040520291 12766404
58. L. Zhang and J.A. Doudna 2002 Science 295 2084-2088 10.1126/science.1069268 11859154