Possible role of the 11-cis-retinyl conformation in controlling the dual decay processes of excited rhodopsin

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 31, 2005, Pages 10783-10787

  Liu, Robert S H ^a   Hammond, George S ^b   Mirzadegan, Taraneh ^c  

^a UNIVERSITY OF HAWAII   (United States)

^b Roche Palo Alto LLC ^*  (United States)

^c ROCHE BIOSCIENCE   (United States)

Author keywords

Molecular modeling; Retinal binding site; Retinal conformation

Indexed keywords

11 CIS RETINAL; RHODOPSIN;

ARTICLE; BINDING SITE; CHEMICAL BOND; CONFORMATION; CRYSTAL STRUCTURE; DECOMPOSITION; HYDROPHOBICITY; MOLECULAR INTERACTION; MOLECULAR MODEL; PRIORITY JOURNAL; QUANTUM YIELD; STEREOSPECIFICITY;

BINDING SITES; MODELS, MOLECULAR; MOLECULAR CONFORMATION; MOLECULAR STRUCTURE; PHOTOCHEMISTRY; PROTEIN CONFORMATION; RETINALDEHYDE; RHODOPSIN; STEREOISOMERISM;

EID: 23344442889     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0501665102     Document Type: Article

References (37)

1. Palczewski, K., Kumasaha, T., Hori, T., Benhke, C. A., Motoshima, H., Fox, B. A., Le Trong, I., Teller, D. C., Okada, T., Stemkamp, R. E., et al. (2000) Science 289, 739-745.
2. Teller, D. C., Okada, T., Behnke, C. A., Palczewski, K. & Stenkamp, R. E. (2001) Biochemistry 40, 7761-7772.
3. Liu, R. S. H. & Colmenares, L. U. (2003) Proc. Natl. Acad. Sci. USA 100, 14639-14644.
4. Chosrowjan, H., Mataga, N., Shibata, Y., Tachibanaki, S., Kandori, H., Shichida, Y., Okada, T. & Kouyama, T. (1998) J. Am. Chem. Soc. 120, 9706-9707.
5. Wang, Q., Schoenlein, R. W., Peteanu, L. A., Mathies, R. A. & Shank, C. V. (1994) Science 266, 422-424.
6. Kandori, H., Furutani, Y., Nishimura, S., Shichida, Y., Chosrowjan, H., Shibata, Y. & Malaga, N. (2001) Chem. Phys. Lett. 334, 271-276.
7. Kim, J. E., Tauber, M. J. & Mathies, R. A. (2001) Biochemistry 40, 13774-13778.
8. Hubbard, R., Brown, P. K. & Bownds, D. (1971) Methods Enzymol. C 18, 615-653.
9. Wald, G. (1968) Science 162, 232-239.
10. Simmons, C. J., Liu, R. S. H., Denny, M. & Seff, K. (1981)Acta Crystallagr. B 37, 2197-2205.
11. Rowan, R., III, Warshel, A., Sykes, B. & Karplus, M. (1974) Biochemistry 13, 970-981.
12. Fujimoto, Y., Ishihara, J., Maki, S., Fujioka, N., Wang, T., Furula, T., Fishkin, T., Borhan, S., Berova, N. & Nakanishi, K. (2001) Chem. Eur. J. 7, 4198-4204.
13. Lueke, H., Schobert, B., Richter, H. T., Cartailler, J.-P. & Lanyi, J. K. (1999) J. Mol. Biol. 291, 899-911.
14. Havinga, E. (1962) Chimia 16, 145-172.
15. Hammond, G. S. & Liu, R. S. H. (1963) J. Am. Chem. Soc. 85, 477-478.
16. Matsumoto, H. & Yoshizawa, T. (1978) Vision Res. 18, 607-609.
17. Colmenares, L. U., Niemczura, W. P., Asato, A. E. & Liu, R. S. H. (1996) J. Phys. Chem. 100, 9175-9180.
18. Colmenares, L. U. & Liu, R. S. H. (2003) J. Photosci. 10, 81-87.
19. Okada, T., Fujiyoshi, Y., Silow, M., Navarro, J., Landau, E. M. & Shichida, Y. (2002) Proc. Natl. Acad. Sci. USA 99, 5982-5987.
20. Pauling, L. (1960) The Nature of the Chemical Bond (Cornell Univ. Press, Ithaca, NY).
21. Liu, R. S. H. & Mirzadegan, T. (1989) J. Am. Chem. Soc. 110, 8617-8623.
22. Liu, R. S. H., Matsumoto, H., Kini, A., Asato, A. E., Denny, M., Kropf, A. & DeGrip, W. J. (1984) Tetrahedron 40, 473-482.
23. Liu, R. S. H. & Asato, A. E. (1990) in Chemistry and Biology of Synthetic Retinoids, eds. Dawson, M. & Okamura, W. H. (CRC, Boca Raton, FL), pp. 147-176.
24. Liu, R. S. H., Asato, A. E., Denny, M. & Mead, D. (1984) J. Am. Chem. Soc. 106, 8298-8300.
25. Nakanishi, K. & Crouch, R. (1995) Isr. J. Chem. 35, 253-272.
26. Buss, V., Kolster, K., Terstegen, F. & Vekrenhorst, R. (l998)Angew. Chem. Int. Ed. 33, 1893-1895.
27. Fujimoto, Y., Fishkin, N., Pescitelli, G., Decatur, J., Berova, N. & Nakanishi, K. (2002) J. Am. Chem. Soc. 124, 7294-7302.
28. Yoshizawa, T. & Kandori, H. (1991) Prog. Retinal Res., 11, 33-55.
29. Ferre, N. & Olivucci, M. (2003) J. Am. Chem. Soc. 125, 6868-6869.
30. Ishiguro, M., Hirano, Y. & Oyama, Y. (2003) ChemBioChem. 3, 228-231.
31. Sasaki, N., Tokunaga, F. & Yoshizawa, T. (1980) FEBS Lett. 114, 1-3.
32. Shichida, Y., Matuoka, S. & Yoshizawa, T. (1984) Photobiochem. Photobiophys. 7, 221-228.
33. Mathies, R. A. & Lugtenburg, J. (2000) in Handbook of Biological Physics, eds. Stavenga, D. G., deGrip, W. J. & Pugh, E. N., Jr. (Elsevier, Amsterdam). Vol. 3, pp. 55-90.
34. Kochendoerfer, G. G. & Mathies, R. A. (1996) J. Phys. Chem. 100, 14526-14532.
35. Anderson, S., Srajer, V. & Moffat, K. (2004) Photochem. Photobiol. 80, 7-14.
36. Harada, J. & Ogawa, K. (2004) J. Am. Chem. Soc. 126, 3539-3544.
37. Okada, T., Sugihara, M., Bondar, Ana-Nicoleta, Elstner, M., Entel, P. & Buss, V. (2004) J. Mol. Biol. 342, 571-583.