Structure of plant viruses from vibrational circular dichroism

Journal of General Virology

Volumn 86, Issue 8, 2005, Pages 2371-2377

  Shanmugan, Ganesh ^a   Polavarapu, Prasad L ^a   Kendall, Amy ^a   Stubbs, Gerald ^a  

^a VANDERBILT UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMIDE; NUCLEIC ACID; VIRUS PROTEIN; VIRUS RNA; CAPSID PROTEIN;

ARTICLE; CIRCULAR DICHROISM; CONTROLLED STUDY; FEASIBILITY STUDY; GENE DELETION; NARCISSUS MOSAIC VIRUS; NONHUMAN; PAPAYA VIRUS; PH; PLANT VIRUS; POTATO VIRUS X; PRIORITY JOURNAL; PROTEIN STRUCTURE; TOBACCO MOSAIC VIRUS; VIRUS; VIRUS GENE; VIRUS MORPHOLOGY; CHEMISTRY; COMPARATIVE STUDY; PROTEIN SECONDARY STRUCTURE;

NARCISSUS MOSAIC VIRUS; PAPAYA MOSAIC VIRUS; POTATO VIRUS X; TOBACCO MOSAIC VIRUS;

CAPSID PROTEINS; CIRCULAR DICHROISM; PLANT VIRUSES; PROTEIN STRUCTURE, SECONDARY;

EID: 23044452465     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.81055-0     Document Type: Article

References (38)

1. AbouHaidar, M. G. & Gellatly, D. (1999). Potexviruses. In Encyclopedia of Virology, 2nd edn, pp. 1364-1368. Edited by A. Granoff & R. G. Webster. London: Academic Press.
2. Annamalai, A. & Keiderling, T. A. (1987). Vibrational circular dichroism of polyribonucleic acids. A comparative study in aqueous solution. J Am Chem Soc 109, 3125-3132.
3. Baratova, L. A., Grebenshchikov, N. I., Dobrov, E. N. & 7 other authors (1992). The organization of potato virus X coat proteins in virus particles studied by tritium planigraphy and model building. Virology 188, 175-180.
4. Barron, L. D. (2004). Molecular Light Scattering and Optical Activity, 2nd edn. London: Cambridge University Press.
5. 2O solution. J Am Chem Soc 115, 6939-6942.
6. Blanch, E. W., Robinson, D. J., Hecht, L., Syrne, C. D., Nielsen, K. & Barron, L. D. (2002). Solution structures of potato virus X and narcissus mosaic virus from Raman optical activity. J Gen Virol 83, 241-246.
7. Boedtker, H. & Simmons, N. S. (1958). The preparation and characterization of essentially uniform tobacco mosaic virus particles. J Am Chem Soc 80, 2550-2556.
8. Bose, P. K. & Polavarapu, P. L. (1999a). Vibrational circular dichroism of monosaccharides. Carbohyd Res 319, 172-183.
9. Bose, P. K. & Polavarapu, P. L. (1999b). Acetate groups as probes of the stereochemistry of carbohydrates: a vibrational circular dichroism study. Carbohyd Res 322, 135-141.
10. Chapman, S., Hills, G., Watts, J. & Baulcombe, D. (1992). Mutational analysis of the coat protein gene of potato virus X: effects on virion morphology and viral pathogenicity. Virology 191, 223-230.
11. Erickson, J. W. & Bancroft, J. B. (1978). The self-assembly of papaya mosaic virus. Virology 90, 36-46.
12. Erickson, J. W., Bancroft, J. B. & Stillman, M. J. (1981). Circular dichroism studies of papaya mosaic virus coat protein and its polymers. J Mol Biol 147, 337-349.
13. Goodman, R. M. (1975). Reconstitution of potato virus X in vitro. I. Properties of the dissociated protein structural subunits. Virology 68, 287-298.
14. Gupta, V. P. & Keiderling, T. A. (1992). Vibrational CD of the amide II band in some model polypeptides and proteins. Biopolymers 32, 239-248.
15. Homer, R. B. & Goodman, R. M. (1975). Circular dichroism and fluorescence studies on potato virus X and its structural components. Biochim Biophys Acta 378, 296-304.
16. Keiderling, T. A. (1981). Vibrational circular dichroism. Appl Spectrosc Rev 17, 189-225.
17. n [n=3, 4, 5, 6] at different temperatures and ionic strengths. Biopolymers 46, 455-463.
18. Lewandowski, D. J. & Dawson, W. O. (1999). Tobamoviruses. In Encyclopedia of Virology, 2nd edn, pp. 1780-1783. Edited by A. Granoff & R. G. Webster. London: Academic Press.
19. Nafie, L. A. (1984). Experimental and theoretical advances in vibrational optical activity. In Advances in Infrared and Raman Spectroscopy, vol. 11, pp. 49-93. Edited by R. J. H. Clark & R. E. Hester. London: Heyden & Sons.
20. Nafie, L. A. (2000). Dual polarization modulation: a real-time, spectral-multiplex separation of circular dichroism from linear birefringence spectral intensities. Appl Spectrosc 54, 1634-1645.
21. Namba, K., Pattanayek, R. & Stubbs, G. (1989). Visualization of protein-nucleic acid interactions in a virus; refinement of intact tobacco mosaic virus structure at 2.9Å resolution by fiber diffraction. J Mol Biol 208, 307-325.
22. Orlov, V. N., Arutyunyan, A. M., Kust, S. V., Litmanovich, E. A., Drachev, V. A. & Dobrov, E. N. (2001). Macroscopic aggregation of tobacco mosaic virus coat protein. Biochemistry 66, 154-162.
23. Pancoska, P., Yasui, S. C. & Keiderling, T. A. (1991). Statistical analyses of the vibrational circular dichroism of selected proteins and relationship to secondary structures. Biochemistry 30, 5089-5103.
24. Parker, L., Kendall, A. & Stubbs, G. (2002). Surface features of potato virus X from fiber diffraction. Virology 300, 291-295.
25. Petrovic, A. G., Bose, P. K. & Polavarapu, P. L. (2004). Vibrational circular dichroism of carbohydrate films formed from aqueous solutions. Carbohydr Res 339, 2713-2720.
26. Polavarapu, P. L. (1998). Vibrational Spectra: Principles and Applications with Emphasis on Optical Activity. New York: Elsevier Publications.
27. Sawyer, L., Tollin, P. & Wilson, H. R. (1987). A comparison between the predicted secondary structures of potato virus X and papaya mosaic virus coat proteins. J Gen Virol 68, 1229-1232.
28. Schweitzer-Stenner, R., Eker, F., Perez, A., Griebenow, K., Cao, X. & Nafie, L. A. (2003). The structure of tri-proline in water probed by polarized Raman, Fourier transform infrared, vibrational circular dichroism, and electric ultraviolet circular dichroism spectroscopy. Biopolymers 71, 558-568.
29. Shanmugam, G. & Polavarapu, P. L. (2004a). Vibrational circular dichroism of protein films. J Am Chem Soc 126, 10292-10295.
30. Shanmugam, G. & Polavarapu, P. L. (2004b). Structure of Aβ(25-35) peptide in different environments. Biophys J 87, 622-630.
31. Shanmugam, G. & Polavarapu, P. L. (2004c). Vibrational circular dichroism spectra of protein films: thermal denaturation of bovine serum albumin. Biophys Chem 111, 73-77.
32. Shukla, D. D., Strike, P. M., Tracy, S. L., Gough, K. H. & Ward, C. W. (1988). The N and C termini of the coat proteins of potyviruses are surface-located and the N terminus contains the major virus specific epitopes. J Gen Virol 69, 1497-1508.
33. 10-from α-helices: vibrational and electronic CD and IR absorption study of related Aib-containing oligopeptides. Biopolymers 65, 229-243.
34. Tummalapalli, C. M., Back, D. M. & Polavarapu, P. L. (1988). Fourier-transform infrared vibrational circular dichroism of simple carbohydrates. J Chem Soc Faraday Trans 1 84, 2585-2594.
35. Wilson, H. R., Tollin, P., Sawyer, L., Robinson, D. J., Price, N. C. & Kelly, S. M. (1991). Secondary structures of narcissus mosaic virus coat protein. J Gen Virol 72, 1479-1480.
36. Yoder, G., Keiderling, T. A., Formaggio, F., Crisma, M. & Toniolo, C. (1995). Characterization of β-bend ribbon spiral forming peptides using electronic and vibrational CD. Biopolymers 35, 103-111.
37. Zhao, C. & Polavarapu, P. L. (1999). Vibrational circular dichroism is an incisive structural probe: ion-induced structural changes in gramicidin D. J Am Chem Soc 121, 11259-11260.
38. Zhao, C., Polavarapu, P. L., Das, C. & Balaram, P. (2000). Vibrational circular dichroism of β-hairpin peptides. J Am Chem Soc 122, 8228-8231.