-
1
-
-
0016146021
-
Three-dimensional tertiary structure of yeast phenylalanine transfer RNA
-
Kim SH, Suddath GJ, Quigley GJ, et al. Three-dimensional tertiary structure of yeast phenylalanine transfer RNA. Science 1974; 185: 435-9
-
(1974)
Science
, vol.185
, pp. 435-439
-
-
Kim, S.H.1
Suddath, G.J.2
Quigley, G.J.3
-
2
-
-
0033862354
-
The crystal structure of yeast phenylalanine tRNA at 1.93 a resolution: A classic structure revisited
-
Shi H, Moore PB. The crystal structure of yeast phenylalanine tRNA at 1.93 a resolution: a classic structure revisited. RNA 2000; 6: 1091-105
-
(2000)
RNA
, vol.6
, pp. 1091-1105
-
-
Shi, H.1
Moore, P.B.2
-
3
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters provides robust prediction of RNA secondary structure
-
Mathews D, Sabina J, Zuker M, et al. Expanded sequence dependence of thermodynamic parameters provides robust prediction of RNA secondary structure. J Mol Biol 1999; 288: 911-40
-
(1999)
J Mol Biol
, vol.288
, pp. 911-940
-
-
Mathews, D.1
Sabina, J.2
Zuker, M.3
-
5
-
-
2942571539
-
The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone JJ, Subramanian S, Schnare MN, et al. The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics 2002; 3: 2
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
-
8
-
-
0042745431
-
Models of the primary and secondary structure for the 12S rRNA of birds: A guideline for sequence alignment
-
Espinosa de los Monteros A. Models of the primary and secondary structure for the 12S rRNA of birds: a guideline for sequence alignment. DNA Seq 2003; 14: 241-56
-
(2003)
DNA Seq
, vol.14
, pp. 241-256
-
-
Espinosa De Los Monteros, A.1
-
9
-
-
0042834096
-
Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural element
-
Vitreschak AG, Rodionov DA, Mironov AA, et al. Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural element. RNA 2003; 9: 1084-97
-
(2003)
RNA
, vol.9
, pp. 1084-1097
-
-
Vitreschak, A.G.1
Rodionov, D.A.2
Mironov, A.A.3
-
10
-
-
0036301332
-
Secondary structure prediction for aligned RNA sequences
-
Hofacker I, Fekete M, Stadler P. Secondary structure prediction for aligned RNA sequences. J Mol Biol 2002; 319: 1059-66
-
(2002)
J Mol Biol
, vol.319
, pp. 1059-1066
-
-
Hofacker, I.1
Fekete, M.2
Stadler, P.3
-
11
-
-
0033230822
-
ConStruct: A tool for thermodynamic controlled prediction of conserved secondary structure
-
Lück R, Gräf S, Steger G. ConStruct: a tool for thermodynamic controlled prediction of conserved secondary structure. Nucleic Acids Res 1999; 27: 4208-17
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4208-4217
-
-
Lück, R.1
Gräf, S.2
Steger, G.3
-
12
-
-
0028272315
-
RNA sequence analysis using covariance models
-
Eddy S, Durbin R. RNA sequence analysis using covariance models. Nucleic Acids Res 1994; 22: 2079-88
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 2079-2088
-
-
Eddy, S.1
Durbin, R.2
-
13
-
-
0023168251
-
An event-covering method for effective probabilistic inference
-
Wong AKC, Chiu DKY. An event-covering method for effective probabilistic inference. Pattern Recognit 1987; 20: 245-55
-
(1987)
Pattern Recognit
, vol.20
, pp. 245-255
-
-
Wong, A.K.C.1
Chiu, D.K.Y.2
-
15
-
-
0025832114
-
Inferring consensus structure from nucleic acid sequences
-
Chiu DK, Kolodziejczak T. Inferring consensus structure from nucleic acid sequences. Comput Appl Biosci 1991; 7: 347-52
-
(1991)
Comput Appl Biosci
, vol.7
, pp. 347-352
-
-
Chiu, D.K.1
Kolodziejczak, T.2
-
16
-
-
0026466830
-
Identifying constraints on the higher-order structure of RNA: Continued development and application of comparative sequence analysis methods
-
Gutell RR, Power A, Hertz GZ, et al. Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods. Nucleic Acids Res 1992; 20: 5785-95
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 5785-5795
-
-
Gutell, R.R.1
Power, A.2
Hertz, G.Z.3
-
17
-
-
0031473030
-
Displaying the information contents of structural RNA alignments
-
Gorodkin J, Heyer L, Brunak S, et al. Displaying the information contents of structural RNA alignments. Bioinformatics 1997; 13: 583-6
-
(1997)
Bioinformatics
, vol.13
, pp. 583-586
-
-
Gorodkin, J.1
Heyer, L.2
Brunak, S.3
-
18
-
-
0019082587
-
Fast algorithm for predicting the secondary structure of single-stranded RNA
-
Nussinov R, Jacobson AB. Fast algorithm for predicting the secondary structure of single-stranded RNA. Proc Natl Acad Sci U S A 1980; 77: 6903-13
-
(1980)
Proc Natl Acad Sci U S A
, vol.77
, pp. 6903-6913
-
-
Nussinov, R.1
Jacobson, A.B.2
-
19
-
-
0347724163
-
An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots
-
Ruan J, Stormo GD, Zhang W. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots. Bioinformatics 2004; 20: 58-66
-
(2004)
Bioinformatics
, vol.20
, pp. 58-66
-
-
Ruan, J.1
Stormo, G.D.2
Zhang, W.3
-
20
-
-
0021759975
-
Energy directed folding of RNA sequences
-
Hogeweg P, Hesper B. Energy directed folding of RNA sequences. Nucleic Acids Res 1984; 12: 67-74
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 67-74
-
-
Hogeweg, P.1
Hesper, B.2
-
21
-
-
0025008168
-
Sequence logos: A new way to display consensus sequences
-
Schneider T, Stephens R. Sequence logos: a new way to display consensus sequences. Nucleic Acids Res 1990; 18: 6097-100
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 6097-6100
-
-
Schneider, T.1
Stephens, R.2
-
22
-
-
0022422660
-
IUPAC-IUB symbols for nucleotide nomenclature
-
Cornish-Bowden A. IUPAC-IUB symbols for nucleotide nomenclature. Nucleic Acids Res 1985; 13: 3021-30
-
(1985)
Nucleic Acids Res
, vol.13
, pp. 3021-3030
-
-
Cornish-Bowden, A.1
-
23
-
-
34249772381
-
Fast folding and comparison of RNA secondary structures
-
Hofacker IL, Fontana W, Bonhoeffer S, et al. Fast folding and comparison of RNA secondary structures. Monatsh Chem 1994; 125: 167-88
-
(1994)
Monatsh Chem
, vol.125
, pp. 167-188
-
-
Hofacker, I.L.1
Fontana, W.2
Bonhoeffer, S.3
-
24
-
-
0035253413
-
Pseudoknots in prion protein mRNAs confirmed by comparative sequence analysis and pattern searching
-
Barrette I, Poisson G, Gendron P, et al. Pseudoknots in prion protein mRNAs confirmed by comparative sequence analysis and pattern searching. Nucleic Acids Res 2001; 29: 753-8
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 753-758
-
-
Barrette, I.1
Poisson, G.2
Gendron, P.3
-
25
-
-
0030854739
-
tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997; 25: 955-64
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
26
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994; 22: 4673-80
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
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