In vitro and in silico analysis of signal peptides from the human blood fluke, Schistosoma mansoni

FEMS Immunology and Medical Microbiology

Volumn 45, Issue 2, 2005, Pages 201-211

  Pearson, Mark S ^a   McManus, Donald P ^a   Smyth, Danielle J ^a   Lewis, Fred A ^b   Loukas, Alex ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

^b BIOMEDICAL RESEARCH INSTITUTE   (United States)

Author keywords

Parasite; Schistosoma mansoni; Signal peptide; Signal sequence trap; Transmembrane

Indexed keywords

COMPLEMENTARY DNA; MITOGEN ACTIVATED PROTEIN KINASE; PEPTIDE; TRANSCRIPTOME;

AMINO TERMINAL SEQUENCE; ARTICLE; BIOINFORMATICS; COMPARATIVE STUDY; ESCHERICHIA COLI; GENE ISOLATION; GENETIC CODE; GENETIC TRANSCRIPTION; HUMAN; LIFE CYCLE; MAMMAL CELL; NEMATODE; NONHUMAN; NUCLEOTIDE SEQUENCE; PEPTIDE ANALYSIS; PRIORITY JOURNAL; PROTEIN SECRETION; SCHISTOSOMA; SCHISTOSOMA MANSONI; SCREENING; TREMATODE; UPREGULATION;

AMINO ACID SEQUENCE; ANIMALS; BACTERIAL PROTEINS; CALCIUM-TRANSPORTING ATPASES; CERCOPITHECUS AETHIOPS; COS CELLS; DNA, HELMINTH; ESCHERICHIA COLI; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENES, HELMINTH; GUANINE NUCLEOTIDE EXCHANGE FACTORS; HELMINTH PROTEINS; HUMANS; MICE; MOLECULAR SEQUENCE DATA; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEIN SORTING SIGNALS; SCHISTOSOMA MANSONI; SEQUENCE HOMOLOGY, AMINO ACID; TRANSFECTION;

EID: 22844448335     PISSN: 09288244     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsim.2005.03.009     Document Type: Article

References (33)

1. T. Yoshino, J. Boyle, and J. Humphries Receptor-ligand interactions and cell signalling at the host-parasite interface Parasitology 123 2001 S143 S157
2. D. Smyth, D.P. McManus, M.J. Smout, T. Laha, W. Zhang, and A. Loukas Isolation of cDNAs encoding secreted and transmembrane proteins from Schistosoma mansoni by a signal sequence trap method Infect. Immun. 71 2003 2548 2554
3. S. Verjovski-Almeida, R. DeMarco, E.A. Martins, P.E. Guimaraes, E.P. Ojopi, A.C. Paquola, J.P. Piazza, M.Y. Nishiyama Jr., J.P. Kitajima, R.E. Adamson, P.D. Ashton, M.F. Bonaldo, P.S. Coulson, G.P. Dillon, L.P. Farias, S.P. Gregorio, P.L. Ho, R.A. Leite, L.C. Malaquias, R.C. Marques, P.A. Miyasato, A.L. Nascimento, F.P. Ohlweiler, E.M. Reis, M.A. Ribeiro, R.G. Sa, G.C. Stukart, M.B. Soares, C. Gargioni, T. Kawano, V. Rodrigues, A.M. Madeira, R.A. Wilson, C.F. Menck, J.C. Setubal, L.C. Leite, and E. Dias-Neto Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni Nat. Genet. 35 2003 148 157
4. W. Hu, Q. Yan, D.K. Shen, F. Liu, Z.D. Zhu, H.D. Song, X.R. Xu, Z.J. Wang, Y.P. Rong, L.C. Zeng, J. Wu, X. Zhang, J.J. Wang, X.N. Xu, S.Y. Wang, G. Fu, X.L. Zhang, Z.Q. Wang, P.J. Brindley, D.P. McManus, C.L. Xue, Z. Feng, Z. Chen, and Z.G. Han Evolutionary and biomedical implications of a Schistosoma japonicum complementary DNA resource Nat. Genet. 35 2003 139 147
5. M.J. Gardner, N. Hall, E. Fung, O. White, M. Berriman, R.W. Hyman, J.M. Carlton, A. Pain, K.E. Nelson, S. Bowman, I.T. Paulsen, K. James, J.A. Eisen, K. Rutherford, S.L. Salzberg, A. Craig, S. Kyes, M.S. Chan, V. Nene, S.J. Shallom, B. Suh, J. Peterson, S. Angiuoli, M. Pertea, J. Allen, J. Selengut, D. Haft, M.W. Mather, A.B. Vaidya, D.M. Martin, A.H. Fairlamb, M.J. Fraunholz, D.S. Roos, S.A. Ralph, G.I. McFadden, L.M. Cummings, G.M. Subramanian, C. Mungall, J.C. Venter, D.J. Carucci, S.L. Hoffman, C. Newbold, R.W. Davis, C.M. Fraser, and B. Barrell Genome sequence of the human malaria parasite Plasmodium falciparum Nature 419 2002 498 511
6. K.K. Tetteh, A. Loukas, C. Tripp, and R.M. Maizels Identification of abundantly expressed novel and conserved genes from the infective larval stage of Toxocara canis by an expressed sequence tag strategy Infect. Immun. 67 1999 4771 4779
7. Y.M. Harcus, J. Parkinson, C. Fernandez, J. Daub, M.E. Selkirk, M.L. Blaxter, and R.M. Maziels Signal sequence analysis of expressed sequence tags from the nematode Nippostrongylus brasiliensis and the evolution of secreted proteins in parasites Genome Biol. 5 2004 R39
8. H. Chen, and P. Leder A new signal sequence trap using alkaline phosphatase as a reporter Nucl. Acids Res. 27 1999 1219 1222
9. J.P. Dalton, S.R. Day, A.C. Drew, and P.J. Brindley A method for the isolation of schistosome eggs and miracidia free from contaminating host tissues Parasitology 155 Pt 2 1997 29 32
10. R.L. de Mendonca, E. Beck, F.D. Rumjanek, and A. Goffeau Cloning and characterization of a putative calcium-transporting ATPase gene from Schistosoma mansoni Mol. Biochem. Parasitol. 72 1995 129 139
11. C. Pierrot, A. Capron, and J. Khalife Cloning and characterization of two genes encoding Schistosoma mansoni elastase Mol. Biochem. Parasitol. 75 1995 113 117
12. H. Nielsen, J. Engelbrecht, S. Brunak, and G. von Heijne Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites Protein Eng. 10 1997 1 6
13. C.W. Hooker, and P.J. Brindley Cloning and characterisation of strain-specific transcripts encoding triosephosphate isomerase, a candidate vaccine antigen from Schistosoma japonicum Mol. Biochem. Parasitol. 82 1996 265 269
14. J.L. Boore Animal mitochondrial genomes Nucl. Acids Res. 27 1999 1767 1780
15. K.L. Pierce, R.T. Premont, and R.J. Lefkowitz Seven-transmembrane receptors Nat. Rev. Mol. Cell. Biol. 3 2002 639 650
16. K.F. Hoffmann, E.M. Davis, E.R. Fischer, and T.A. Wynn The guanine protein coupled receptor rhodopsin is developmentally regulated in the free-living stages of Schistosoma mansoni Mol. Biochem. Parasitol. 112 2001 113 123
17. F.F. Hamdan, M. Abramovitz, A. Mousa, J. Xie, Y. Durocher, and P. Ribeiro A novel Schistosoma mansoni G protein-coupled receptor is responsive to histamine Mol. Biochem. Parasitol. 119 2002 75 86
18. P.J. Skelly, A. Da'dara, and D.A. Harn Suppression of cathepsin B expression in Schistosoma mansoni by RNA interference Int. J. Parasitol. 33 2003 363 369
19. K. Iwasaki, and R. Toyonaga The Rab3 GDP/GTP exchange factor homolog AEX-3 has a dual function in synaptic transmission EMBO J. 19 2000 4806 4816
20. A.R. Schievella, J.H. Chen, J.R. Graham, and L.L. Lin MADD, a novel death domain protein that interacts with the type 1 tumor necrosis factor receptor and activates mitogen-activated protein kinase J. Biol. Chem. 272 1997 12069 12075
21. T.H. Le, D. Blair, T. Agatsuma, P.F. Humair, N.J. Campbell, M. Iwagami, D.T. Littlewood, B. Peacock, D.A. Johnston, J. Bartley, D. Rollinson, E.A. Herniou, D.S. Zarlenga, and D.P. McManus Phylogenies inferred from mitochondrial gene orders - a cautionary tale from the parasitic flatworms Mol. Biol. Evol. 17 2000 1123 1125
22. B. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts, and J. Watson Energy conversion: Mitochondria and chloroplasts Molecular biology of the cell third ed. 1994 Garland Publishing, Inc. New York
23. B.E. Van Oordt, A.G. Tielens, and S.G. Van den Bergh Aerobic to anaerobic transition in the carbohydrate metabolism of Schistosoma mansoni cercariae during transformation in vitro Parasitology 98 1989 409 415
24. G. Galliciotti, H. Schneider, L. Wyder, A. Vitaliti, M. Witmer, M. Ajmo, and R. Klemenz Signal-sequence trap in mammalian and yeast cells: a comparison J. Membr. Biol. 183 2001 175 182
25. V. Nene, and R. Bishop Trapping parasite secretory proteins in baker's yeast Trends Parasitol. 17 2001 407 409
26. S.F. Nothwehr, S.D. Hoeltzli, K.L. Allen, M.O. Lively, and J.I. Gordon Residues flanking the COOH-terminal C-region of a model eukaryotic signal peptide influence the site of its cleavage by signal peptidase and the extent of coupling of its co-translational translocation and proteolytic processing in vitro J. Biol. Chem. 265 1990 21797 21803
27. A.L. Karamyshev, Z.N. Karamysheva, A.V. Kajava, V.N. Ksenzenko, and M.A. Nesmeyanova Processing of Escherichia coli alkaline phosphatase: role of the primary structure of the signal peptide cleavage region J. Mol. Biol. 277 1998 859 870
28. D. Belin, L.-M. Guzman, S. Bost, M. Konakova, F. Silva, and J. Beckwith Functional activity of eukaryotic signal sequences in Escherichia coli: the ovalbumin family of serine protease inhibitors J. Mol. Biol. 335 2004 437 453
29. M. Higy, T. Junne, and M. Spiess Topogenesis of membrane proteins at the endoplasmic reticulum Biochemistry 43 2004 12716 12722
30. G. Von Heijne Analysis of the distribution of charged residues in the N-terminal region of signal sequences: implications for protein export in prokaryotic and eukaryotic cells EMBO J. 3 1984 2315 2318
31. G. Von Heijne Patterns of amino acids near signal sequence cleavage sites Eur. J. Biochem. 133 1983 17 21
32. M. Shirozou, H. Tada, K. Tashiro, T. Nakamura, N.D. Lopez, M. Nazarea, T. Hamada, T. Sato, T. Nakano, and T. Honjo Characterisation of novel secreted and membrane proteins isolated by the signal sequence trap method Genomics 37 1996 273 280
33. R.D. Klein, Q. Gu, A. Goddard, and A. Rosenthal Selection for genes encoding secreted proteins and receptors Proc. Natl. Acad. Sci. USA 93 1996 7108 7113