메뉴 건너뛰기




Volumn 15, Issue 3, 2005, Pages 551-559

Dynamic behavior of regulatory elements in the hierarchical regulatory network of various carbon sources-grown Escherichia coli

Author keywords

Dynamic flux balance analysis; Operon; Transcriptional regulation

Indexed keywords

REGULATOR PROTEIN;

EID: 22544460790     PISSN: 10177825     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (7)

References (35)
  • 1
    • 0002561984 scopus 로고    scopus 로고
    • The lac and gal operons today
    • E. C. C. Lin and A. Simon Lynch (eds.), coli Chapman & Hall, New York, U.S.A
    • Adhya, S. 1996. The lac and gal operons today, pp. 181-200. In E. C. C. Lin and A. Simon Lynch (eds.), Regulation of Gene Expression in Escherichia coli. Chapman & Hall, New York, U.S.A.
    • (1996) Regulation of Gene Expression in Escherichia , pp. 181-200
    • Adhya, S.1
  • 2
    • 0035824029 scopus 로고    scopus 로고
    • Regulation of gene expression in flux balance models of metabolism
    • Covert, M. W., C. H. Schilling, and B. O. Palsson. 2001. Regulation of gene expression in flux balance models of metabolism. J. Theor. Biol. 213: 73-88.
    • (2001) J. Theor. Biol. , vol.213 , pp. 73-88
    • Covert, M.W.1    Schilling, C.H.2    Palsson, B.O.3
  • 3
    • 0037008673 scopus 로고    scopus 로고
    • Transcriptional regulation in constraints-based metabolic models of Escherichia coli
    • Covert, M. W. and B. O. Palsson. 2002. Transcriptional regulation in constraints-based metabolic models of Escherichia coli. J. Biol. Chem. 277: 28058-28064.
    • (2002) J. Biol. Chem. , vol.277 , pp. 28058-28064
    • Covert, M.W.1    Palsson, B.O.2
  • 4
    • 2342648924 scopus 로고    scopus 로고
    • Integrating high-throughput and computational data elucidates bacterial networks
    • Covert, M. W., E. M. Knight, J. L. Reed, M. J. Herrgard, and B. O. Palsson. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature 429: 92-96.
    • (2004) Nature , vol.429 , pp. 92-96
    • Covert, M.W.1    Knight, E.M.2    Reed, J.L.3    Herrgard, M.J.4    Palsson, B.O.5
  • 5
    • 0026813814 scopus 로고
    • Contribution of the Fnr and ArcA gene products in coordinate regulation of cytochrome o and d oxidase (cyoABCDE and cyd4B) genes in Escherichia coli
    • Cotter, P. A. and R. P. Gunsalus. 1992. Contribution of the Fnr and ArcA gene products in coordinate regulation of cytochrome o and d oxidase (cyoABCDE and cyd4B) genes in Escherichia coli. FEMS Microbiol. Lett. 70: 31-36.
    • (1992) FEMS Microbiol. Lett. , vol.70 , pp. 31-36
    • Cotter, P.A.1    Gunsalus, R.P.2
  • 6
    • 0035451127 scopus 로고    scopus 로고
    • Modularity in the gain microbial genomes
    • Ettema, T., J. van der Oost, and M. Huynen. 2001. Modularity in the gain microbial genomes. Trends Genet. 17: 485-487.
    • (2001) Trends Genet. , vol.17 , pp. 485-487
    • Ettema, T.1    van der Oost, J.2    Huynen, M.3
  • 7
    • 0035910426 scopus 로고    scopus 로고
    • Reproducing tna operon regulation in vitro in an S-30 system
    • Feng, G. and C. Yanofsky. 2001. Reproducing tna operon regulation in vitro in an S-30 system. J. Biol. Chem. 276: 1974-1983.
    • (2001) J. Biol. Chem. , vol.276 , pp. 1974-1983
    • Feng, G.1    Yanofsky, C.2
  • 8
    • 0003653905 scopus 로고    scopus 로고
    • 2nd Ed. ASM Press, Washington, DC, U.S.A
    • Glick, B. R. and J. J. Pasternak. 1998. Molecular Biotechnology, pp. 35-38. 2nd Ed. ASM Press, Washington, DC, U.S.A.
    • (1998) Molecular Biology , pp. 35-38
    • Glick, B.R.1    Pasternak, J.J.2
  • 9
    • 0033826107 scopus 로고    scopus 로고
    • Metabolic flux distribution in a metabolically engineered Escherichia coli strain producing succinic acid
    • Hong, S. H. and S. Y. Lee. 2000. Metabolic flux distribution in a metabolically engineered Escherichia coli strain producing succinic acid. J. Microbiol. Biotechnol. 10: 496-501.
    • (2000) J. Microbiol. Biotechnol. , vol.10 , pp. 496-501
    • Hong, S.H.1    Lee, S.Y.2
  • 10
    • 0041377673 scopus 로고    scopus 로고
    • Prediction of maximum yields of metabolites and optimal pathways for their production by metabolic flux analysis
    • Hong, S. H., S. Y. Moon, and S. Y. Lee. 2003. Prediction of maximum yields of metabolites and optimal pathways for their production by metabolic flux analysis. J. Microbiol. Biotechnol. 13: 571-577.
    • (2003) J. Microbiol. Biotechnol. , vol.13 , pp. 571-577
    • Hong, S.H.1    Moon, S.Y.2    Lee, S.Y.3
  • 11
    • 0031811851 scopus 로고    scopus 로고
    • RegulonDB: A database on transcriptional regulation in Escherichia coli
    • Huerta, A. M., H. Salgado, D. Thieffry, and J. Collado-Vides. 1998. RegulonDB: A database on transcriptional regulation in Escherichia coli. Nucleic Acids Res. 26: 55-59.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 55-59
    • Huerta, A.M.1    Salgado, H.2    Thieffry, D.3    Collado-Vides, J.4
  • 13
    • 0017665121 scopus 로고
    • Essential arginine residues in tryptophanase from Escherichia coli
    • Kazarinoff, M. N. and E. E. Snell, 1977. Essential arginine residues in tryptophanase from Escherichia coli. J. Biol. Chem. 252: 7598-7602.
    • (1977) J. Biol. Chem. , vol.252 , pp. 7598-7602
    • Kazarinoff, M.N.1    Snell, E.E.2
  • 14
    • 0033933221 scopus 로고    scopus 로고
    • Rho-dependent transcription termination in the tna operon of Escherichia coli: Roles of the boxA sequence and the rut site
    • Konan, V. K. and C. Yanofsky. 2000. Rho-dependent transcription termination in the tna operon of Escherichia coli: Roles of the boxA sequence and the rut site. J. Bacteriol. 182: 3981-3988.
    • (2000) J. Bacteriol. , vol.182 , pp. 3981-3988
    • Konan, V.K.1    Yanofsky, C.2
  • 15
    • 0035206064 scopus 로고    scopus 로고
    • The organization of metabolic reaction networks: Application for diauxic growth on glucose and lactose
    • Kremling, A., K. Bettenbrock, B. Laube, J. W. Lengeler, and E. D. Gilles. 2001. The organization of metabolic reaction networks: Application for diauxic growth on glucose and lactose. Metab. Eng. 3: 362-379.
    • (2001) Metab. Eng. , vol.3 , pp. 362-379
    • Kremling, A.1    Bettenbrock, K.2    Laube, B.3    Lengeler, J.W.4    Gilles, E.D.5
  • 16
    • 0036091844 scopus 로고    scopus 로고
    • Flux regulation patterns and energy audit of E. coli B/r and K-12
    • Lee, J. W., A. Goel, M. M. Ataai, and M. M. Domach. 2002. Flux regulation patterns and energy audit of E. coli B/r and K-12. J. Microbiol. Biotechnol. 12: 248-258.
    • (2002) J. Microbiol. Biotechnol. , vol.12 , pp. 248-258
    • Lee, J.W.1    Goel, A.2    Ataai, M.M.3    Domach, M.M.4
  • 17
    • 0034914935 scopus 로고    scopus 로고
    • Estimation of theoretical yield for ethanol production from D-xylose by recombinant Saccharomyces cerevisiae using metabolic pathway synthesis algorithm
    • Lee, T. H., M. Y. Kim, Y. W. Ryu, and J. H. Seo. 2001. Estimation of theoretical yield for ethanol production from D-xylose by recombinant Saccharomyces cerevisiae using metabolic pathway synthesis algorithm. J. Microbiol. Biotechnol. 11: 384-388.
    • (2001) J. Microbiol. Biotechnol. , vol.11 , pp. 384-388
    • Lee, T.H.1    Kim, M.Y.2    Ryu, Y.W.3    Seo, J.H.4
  • 19
    • 0029028963 scopus 로고
    • Circuit simulation of genetic networks
    • MacAdams, H. H. and L. Shapiro. 1995. Circuit simulation of genetic networks. Science 269: 650-656.
    • (1995) Science , vol.269 , pp. 650-656
    • MacAdams, H.H.1    Shapiro, L.2
  • 20
    • 0036708443 scopus 로고    scopus 로고
    • Dynamic flux balance analysis of diauxic growth in Escherichia coli
    • Mahadevan, R., J. S. Edwards, and J. D. Francis. 2002. Dynamic flux balance analysis of diauxic growth in Escherichia coli. Biophys. J. 83: 1331-1340.
    • (2002) Biophys. J. , vol.83 , pp. 1331-1340
    • Mahadevan, R.1    Edwards, J.S.2    Francis, J.D.3
  • 21
    • 0021760050 scopus 로고
    • Knowledge-based simulation of genetic regulation in bacteriophage lambda
    • Meyers, S. and P. Friedland. 1984. Knowledge-based simulation of genetic regulation in bacteriophage lambda. Nucleic Acids Res. 12: 1-9.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 1-9
    • Meyers, S.1    Friedland, P.2
  • 24
    • 0034447725 scopus 로고    scopus 로고
    • Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems
    • Schilling, C. H., J. S. Edwards, D. Letscher, and B. O. Palsson. 2000. Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems. Biotechnol. Bioeng. 71: 286-306.
    • (2000) Biotechnol. Bioeng. , vol.71 , pp. 286-306
    • Schilling, C.H.1    Edwards, J.S.2    Letscher, D.3    Palsson, B.O.4
  • 26
    • 0036578795 scopus 로고    scopus 로고
    • Network motifs in the transcriptional regulation network of Escherichia coli
    • Shen-Orr, S. S., R. Milo, S. Mangan, and U. Alon. 2002. Network motifs in the transcriptional regulation network of Escherichia coli. Nat. Genet. 31: 64-68.
    • (2002) Nat. Genet. , vol.31 , pp. 64-68
    • Shen-Orr, S.S.1    Milo, S.2    Mangan, S.3    Alon, U.4
  • 27
    • 0031024670 scopus 로고    scopus 로고
    • Conserved cluster of functionally related genes in two bacterial genomes
    • Tamames, J., G. Casari, C. Ouzounis, and A. Valencia. 1997. Conserved cluster of functionally related genes in two bacterial genomes. J. Mol. Evol. 44: 66-73.
    • (1997) J. Mol. Evol. , vol.44 , pp. 66-73
    • Tamames, J.1    Casari, G.2    Ouzounis, C.3    Valencia, A.4
  • 29
    • 0027223982 scopus 로고
    • Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates
    • Varma, A., B. W. Boesch, and B. O. Palsson. 1993. Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates. Appl. Environ. Microbiol. 59: 2465-2473.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 2465-2473
    • Varma, A.1    Boesch, B.W.2    Palsson, B.O.3
  • 30
    • 0028146781 scopus 로고
    • Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild type Escherichia coli W3110
    • Varma, A. and B. O. Palsson. 1994. Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild type Escherichia coli W3110. Appl. Environ. Microbol. 60: 3724-3731.
    • (1994) Appl. Environ. Microbol. , vol.60 , pp. 3724-3731
    • Varma, A.1    Palsson, B.O.2
  • 31
    • 0028108519 scopus 로고
    • Metabolic flux balancing: Basic concepts, scientific and practical use
    • Varma, A. and B. O. Palsson. 1994. Metabolic flux balancing: Basic concepts, scientific and practical use. Nat. Biotech. 12: 994-998.
    • (1994) Nat. Biotech. , vol.12 , pp. 994-998
    • Varma, A.1    Palsson, B.O.2
  • 32
    • 0004294784 scopus 로고
    • 3th Ed. Addison Wesley, Massachusetts, U.S.A
    • Winston, P. H. 1992. Artificial Intelligence, pp. 119-137. 3th Ed. Addison Wesley, Massachusetts, U.S.A.
    • (1992) Artificial Intelligence , pp. 119-137
    • Winston, P.H.1
  • 33
    • 0031105797 scopus 로고    scopus 로고
    • Mathematical model of the lac operon: Inducer exclusion, catabolite repression, and diauxic growth on glucose and lactose
    • Wong, P., S. Gladney, and J. D. Keasling. 1997. Mathematical model of the lac operon: Inducer exclusion, catabolite repression, and diauxic growth on glucose and lactose. Biotechnol. Progr. 13: 132-143.
    • (1997) Biotechnol. Progr. , vol.13 , pp. 132-143
    • Wong, P.1    Gladney, S.2    Keasling, J.D.3
  • 34
    • 0033506881 scopus 로고    scopus 로고
    • Modeling and predicting transcriptional units of Escherichia coli genes using hidden Markov models
    • Yada, T., M. Nakao, Y. Totoki, and K. Nakai. 1999. Modeling and predicting transcriptional units of Escherichia coli genes using hidden Markov models. Bioinformatics 15: 987-993.
    • (1999) Bioinformatics , vol.15 , pp. 987-993
    • Yada, T.1    Nakao, M.2    Totoki, Y.3    Nakai, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.