Atopococcus tabaci gen. nov., sp. nov., a novel Gram-positive, catalase-negative, coccus-shaped bacterium isolated from tobacco

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 4, 2005, Pages 1693-1696

  Collins, Matthew D ^a   Wiernik, Anna ^b   Falsen, Enevold ^c   Lawson, Paul A ^d  

^a UNIVERSITY OF READING   (United Kingdom)

^b Swedish Match North Europe   (Sweden)

^c UNIVERSITY OF GOTHENBURG   (Sweden)

^d UNIVERSITY OF OKLAHOMA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CATALASE; LYSINE; PEPTIDOGLYCAN; RIBOSOME RNA; RNA 16S; SATURATED FATTY ACID; UNSATURATED FATTY ACID;

ARTICLE; ATOPOCOCCUS TABACI; BACTERIAL CELL; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BIOCHEMISTRY; CELL WALL; CONTROLLED STUDY; GENE SEQUENCE; GRAM POSITIVE COCCI; MICROBIAL MORPHOLOGY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; TAXONOMY; TOBACCO;

BACTERIAL TYPING TECHNIQUES; CATALASE; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; GRAM-POSITIVE COCCI; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; TOBACCO;

ALKALIBACTERIUM; ALLOFUSTIS; ALLOIOCOCCUS; DOLOSIGRANULUM; MARINILACTIBACILLUS; NICOTIANA TABACUM; POSIBACTERIA; UNIDENTIFIED AGENTS;

EID: 22544460541     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63618-0     Document Type: Article

References (22)

1. Aguirre, M. & Collins, M. D. (1992). Phylogenetic analysis of Alloiococcus otitis gen. nov., sp. nov., an organism from human middle ear fluid. Int J Syst Bacteriol 42, 79-83.
2. Aguirre, M., Morrison, D., Cookson, B. D., Gay, F. W. & Collins, M. D. (1993). Phenotypic and phylogenetic characterization of some Gemella-like organisms from human infections: description of Dolosigranulum pigrum gen. nov., sp. nov. J Appl Bacteriol 75, 608-612.
3. Collins, M. D. (1994). Isoprenoid quinones. In: Chemical Methods in Prokaryotic Systematics, pp. 265-309. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
4. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
5. Collins, M. D., Aguirre, M., Facklam, R. R., Shallcross, J. & Williams, A. M. (1992). Globicatella sanguis gen. nov., sp. nov., a new gram-positive catalase-negative bacterium from human sources. J Appl Bacteriol 73, 433-437.
6. Collins, M. D., Falsen, E., Lemozy, J., Åkervall, E., Sjödén, B. & Lawson, P. A. (1997). Phenotypic and phylogenetic characterization of some Globicatella-like organisms from human sources: description of Facklamia hominis gen. nov., sp. nov. Int J Syst Bacteriol 47, 880-882.
7. Collins, M. D., Lawson, P. A., Monasterio, R., Felsen, E., Sjödén, B. & Facklam, R. R. (1999a). Ignavigranum ruoffiae gen. nov., sp. nov., isolated from human clinical specimens. J Clin Microbiol 37, 1161-1164.
8. Collins, M. D., Rodriguez Jovita, M., Hutson, R. A., Falsen, E., Sjödén, B. & Facklam, R. R. (1999b). Dolosicoccus paucivorans gen. nov., sp. nov., isolated from human blood. Int J Syst Bacteriol 49, 1439-1442.
9. Collins, M. D., Higgins, R., Messier, S., Fortin, M., Hutson, R. A., Lawson, P. A. & Falsen, E. (2003). Allofustis seminis gen. nov., sp. nov., a novel Gram-positive, catalase-negative rod-shaped bacterium from pig semen. Int J Syst Evol Microbiol 53, 811-814.
10. Facklam, R. R. & Elliott, J. A. (1995). Identification, classification, and clinical relevance of catalase-negative, gram-positive cocci, excluding the streptococci and enterococci. Clin Microbiol Rev 8, 479-495.
11. Groth, I., Schumann, P., Rainey, F. A., Martin, K., Schuetze, B. & Augsten, K. (1997). Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 47, 1129-1133.
12. Ishikawa, M., Nakajima, K., Yanagi, M., Yamamoto, Y. & Yamasato, K. (2003). Marinilactobacillus psychrotolerans gen. nov., sp. nov., a halophilic and alkaliphilic marine lactic acid bacterium isolated from marine organisms in temperate and subtropical areas of Japan. Int J Syst Evol Mcrobiol 53, 711-720.
13. Lipman, D. J. & Pearson, W. R. (1985). Rapid and sensitive protein similarity searches. Science 227, 1435-1441.
14. MacKenzie, S. L. (1987). Gas chromatographic analysis of amino acids as the N-heptafluorobutyryl isobutyl esters. J Assoc Off Anal Chem 70, 151-160.
15. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
16. Miller, P. H., Facklam, R. R. & Miller, J. M. (1996). Atmospheric growth requirements of Alloiococcus species and related gram-positive cocci. J Clin Microbiol 34, 1027-1028.
17. Nicholas, K. B., Nicholas, H. B., Jr & Deerfield, D. W., II (1997). GeneDoc, analysis and visualization of genetic variation. EMBNEW News 4, 14.
18. Page, R. D. (1996). TREEVIEW, an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
19. Rasmussen, S. W. (2002). SEQtools, a software package for analysis of nucleotide and protein sequences. http://www.seqtools.dk
20. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
21. Schleifer, K. H. (1985). Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18, 123-156.
22. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.