Y25S variant of Paracoccus pantotrophus cytochrome cd1 provides insight into anion binding by d1 heme and a rare example of a critical difference between solution and crystal structures

Journal of Biological Chemistry

Volumn 280, Issue 28, 2005, Pages 26073-26079

  Zajicek, Richard S ^a   Cheesman, Myles R ^b   Gordon, Euan H J ^c   Ferguson, Stuart J ^a,d  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b UNIVERSITY OF EAST ANGLIA   (United Kingdom)

^c CHALMERS UNIVERSITY OF TECHNOLOGY   (Sweden)

^d UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATION ANALYSIS; CRYSTAL STRUCTURE; NEGATIVE IONS; OXIDATION; OXYGEN; PARAMAGNETIC RESONANCE; SPECTROSCOPIC ANALYSIS;

OXIDIZED CYTOCHROME; PARACOCCUS PANTOTROPHUS CYTOCHROME; PHENOLATE OXYGEN; REDUCTIVE ACTIVATION;

ENZYMES;

ANION; CYANIDE; CYTOCHROME C; CYTOCHROME CD1; D1 HEME; ENZYME VARIANT; HEME; HISTIDINE; METHIONINE; NITRATE REDUCTASE; NITRITE; OXYGEN; SERINE; TYROSINE; UNCLASSIFIED DRUG;

ARTICLE; BINDING AFFINITY; CIRCULAR DICHROISM; CRYSTAL STRUCTURE; ELECTRON SPIN RESONANCE; ENZYME ACTIVATION; ENZYME ACTIVE SITE; ENZYME BINDING; ENZYME STRUCTURE; NONHUMAN; OXIDATION; PARACOCCUS PANTOTROPHUS; PRIORITY JOURNAL; REDUCTION;

ANIONS; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; CYTOCHROMES; ELECTRON SPIN RESONANCE SPECTROSCOPY; ESCHERICHIA COLI; HEME; HISTIDINE; HYDROGEN-ION CONCENTRATION; KINETICS; LIGANDS; MUTATION; NITRIC OXIDE; NITRITE REDUCTASES; NITRITES; OXYGEN; PARACOCCUS PANTOTROPHUS; POTASSIUM CYANIDE; PROTEIN BINDING; SPECTROPHOTOMETRY; TEMPERATURE; TYROSINE; ULTRAVIOLET RAYS;

PARACOCCUS PANTOTROPHUS;

EID: 22544439057     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M501890200     Document Type: Article

References (34)

1. Fülöp, V., Moir, J. W., Ferguson, S. J., and Hajdu, J. (1995) Cell 81, 369-377
2. Cheesman, M. R., Ferguson, S. J., Moir, J. W., Richardson, D. J., Zumft, W. G., and Thomson, A. J. (1997) Biochemistry 36, 16267-16276
3. Williams, P. A., Fülöp, V., Garman, E. F., Saunders, N. F. W., Ferguson, S. J., and Hajdu, J. (1997) Nature 389, 406-412
4. Richter, C. D., Allen, J. W. A., Higham, C. W., Köppenhofer, A., Zajicek, R. S., Watmough, N. J., and Ferguson, S. J. (2002) J. Biol. Chem. 277, 3093-3100
5. Allen, J. W. A., Watmough, N. J., and Ferguson, S. J. (2000) Nat. Struct. Biol. 7, 885-888
6. Allen, J. W. A., Higham, C. W., Zajicek, R. S., Watmough, N. J., and Ferguson, S. J. (2002) Biochem. J. 366, 883-888
7. Köppenhofer, A., Turner, K. L., Allen, J. W. A., Chapman, S. K., and Ferguson, S. J. (2000) Biochemistry 39, 4243-4249
8. Jafferji, A., Allen, J. W. A., Ferguson, S. J., and Fülöp, V. (2000) J. Biol. Chem. 275, 25089-25094
9. Gordon, E. H. J., Sjögren, T., Löfqvist, M., Richter, C. D., Allen, J. W. A., Higham, C. W., Hajdu, J., Fülöp, V., and Ferguson, S. J. (2003) J. Biol. Chem. 278, 11773-11781
10. Page, C. C., Moser, C. C., Chen, X., and Button, P. L. (1999) Nature 402, 47-52
11. Moir, J. W., Baratta, D., Richardson, D. J., and Ferguson, S. J. (1993) Eur. J. Biochem. 212, 377-385
12. Leung, Y. C., Chan, C., Reader, J. S., Willis, A. C., van Spanning, R. J., Ferguson, S. J., and Radford, S. E. (1997) Biochem. J. 321, Pt 3, 699-705
13. Silvestrini, M. C., Falcinelli, S., Ciabatti, I., Cutruzzolá, P., and Brunori, M. (1994) Biochimie (Paris) 76, 641-654
14. Sutherland, J., Greenwood, C., Peterson, J., and Thomson, A. J. (1986) Biochem. J. 233, 893-898
15. Köppenhofer, A., Little, R. H., Lowe, D. J., Ferguson, S. J., and Watmough, N. J. (2000) Biochemistry 39, 4028-4036
16. Cheesman, M. R., Greenwood, C., and Thomson, A. J. (1991) Adv. Inorg. Chem. 36, 201-255
17. Stolzenberg, A. M., Strauss, S. H., and Holm, R. H. (1981) J. Am. Chem. Soc. 103, 4763-4778
18. Allen, J. W. A., Cheesman, M. R., Higham, C. W., Ferguson, S. J., and Watmough, N. J. (2000) Biochem. Biophys. Res. Commun. 279, 674-677
19. Walker, F. A., Huynh, B. H., Scheldt, W. R., and Osvath, S. R. (1986) J. Am. Chem. Soc. 108, 5288-5297
20. Pearson, I. V., Page, M. D., van Spanning, R. J., and Ferguson, S. J. (2003) J. Bacteriol. 185, 6308-6315
21. Nurizzo, D., Silvestrini, M. C., Mathieu, M., Cutruzzolá, F., Bourgeois, D., Fülöp, V., Hajdu, J., Brunori, M., Tegoni, M., and Cambillau, C. (1997) Structure (Lond.) 5, 1157-1171
22. Fülöp, V., Moir, J. W., Ferguson, S. J., and Hajdu, J. (1993) J. Mol. Biol. 232, 1211-1212
23. Baker, S. C., Saunders, N. F., Willis, A. C., Ferguson, S. J., Hajdu, J., and Fülöp, V. (1997) J. Mol. Biol. 269, 440-455
24. George, S. J., Allen, J. W. A., Ferguson, S. J., and Thorneley, R. N. (2000) J. Biol. Chem. 275, 33231-33237
25. Feinberg, B. A., Liu, X., Ryan, M. D., Schejter, A., Zhang, C., and Margoliash, E. (1998) Biochemistry 37, 13091-13101
26. Fülöp, V., Watmough, N. J., and Ferguson, S. J. (2001) Adv. Inorg. Chem. 51, 163-204
27. Walsh, T. A., Johnson, M. K., Greenwood, C., Barber, D., Springall, J. P., and Thomson, A. J. (1979) Biochem. J. 177, 29-39
28. Walsh, T. A., Johnson, M. K., Thomson, A. J., Barber, D., and Greenwood, C. (1981) J. Inorg. Biochem. 14, 1-14
29. Doi, M., Shioi, Y., Morita, M., and Takamiya, K. (1989) Eur. J. Biochem. 184, 521-527
30. Sjögren, T., and Hajdu, J. (2001) J. Biol. Chem. 276, 13072-13076
31. Steup, M. B., and Muhoberac, B. B. (1989) J. Inorg. Biochem. 37, 233-257
32. Viola, F., Aime, S., Coletta, M., Desideri, A., Fasano, M., Paoletti, S., Tarricone, C., and Ascenzi, P. (1996) J. Inorg. Biochem. 62, 213-222
33. Brunori, M., Antonini, G., Castagnola, M., and Bellelli, A. (1992) J. Biol. Chem. 267, 2258-2263
34. Cutruzzolá, F., Rinaldo, S., Centola, F., and Brunori, M. (2003) IUBMB Life 55, 617-621