Phylogenetic diversity of the archaeal component in microbial mats on coral-like structures associated with methane seeps in the black sea

Mikrobiologiya

Volumn 71, Issue 2, 2002, Pages 230-236

  Tourova, T P ^a   Kolganova, T V ^b   Kuznetsov, B B ^b   Pimenov, N V ^a  

^a RUSSIAN ACADEMY OF SCIENCES   (Russian Federation)

^b INSTITUTE OF BIOENGINEERING   (Russian Federation)

Author keywords

16S rRNA; Anaerobic methane oxidation; Archaea; Methane seeps; Microbial mats; PCR; Phylogenetic analysis; Sequencing

Indexed keywords

ANTHOZOA; ARCHAEA; CRENARCHAEOTA; EURYARCHAEOTA;

ARCHAEAL RNA; METHANE; RNA 16S;

ANIMAL; ARCHAEBACTERIUM; ARTICLE; BIOLOGY; CLASSIFICATION; COELENTERATE; CRENARCHAEOTA; EURYARCHAEOTA; GENE; GENETICS; MICROBIOLOGY; MOLECULAR CLONING; MOLECULAR GENETICS; PHYLOGENY; SEA;

ANIMALS; ARCHAEA; CLONING, MOLECULAR; CNIDARIA; CRENARCHAEOTA; EURYARCHAEOTA; GENES, ARCHAEAL; MARINE BIOLOGY; METHANE; MOLECULAR SEQUENCE DATA; OCEANS AND SEAS; PHYLOGENY; RNA, ARCHAEAL; RNA, RIBOSOMAL, 16S; WATER MICROBIOLOGY;

EID: 2242437985     PISSN: 00263656     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (19)

1. Zehnder A.J., Brock T.D. Anaerobic methane oxidation: occurrence and ecology // Appl. Environ. Microbiol. 1980. V. 39. P. 194-204.
2. Hoehler T.M., Alperin M.J., Albert D.B., Martens C.S. Field and laboratory studies of methane oxidation in an anoxic marine sediments: evidence for a methanogen-sulfate reducer consortium // Global Biogeochem. Cycles. 1994. V. 8. P. 451-463.
3. Hinrichs K.-U., Hayes J.M., Sylva S.P., Brewer P.G., DeLong E.F. Methane-consuming archaebacteria in marine sediments // Nature. 1999. V. 398. P. 802-805.
4. Boetius A., Ravenschlag K., Schubert G.J., Rickert D., Widdel F., Gieseke A., Amann R., Jorgensen B.B., Witte U., Pfannkuche O. A marine microbial consortium apparently mediating anaerobic oxidation of methane // Nature. 2000. V. 407. P. 623-626.
5. Orphan V.J., Hinrichs K.-U., Ussler III W., Paull C.K., Taylor L.T., Sylva S.P., Hayes J.M., DeLong E.F. Comparative analysis of methane-oxidizing archaea and sulfate-reducing bacteria in anoxic marine sediments // Appl. Environ. Microbiol. 2001. V. 67. P. 1922-1934.
6. Orphan V.J., House C.H., Hinrichs K.-U., McKeegan K.D., DeLong E.F. Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis // Science. 2001. V. 293. P. 484-487.
7. Salenfine D.L., Reeburgh W.S. New perspectives on anaerobic methane oxidation // Environ. Microbiol. 2000. V. 2. P. 477-484.
8. Edwards U., Rogall T., Blacker H., Ende M.D., Boeettge E.C. Isolation and direct complete nucleotide determination of entire genes, characterization of gene coding for 16S ribosomal RNA // Nucl. Acids Res. 1989. V. 17. P. 7843-7853.
9. Holmes A.J., Costello A., Lidstrom M.E., Murrel J.C. Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionary related // FEMS Microbiol. Lett. 1995. V. 132. P. 203-208.
10. Felsenstein J. PHYLIP, phylogenetic inference package (Version 3.2) // Cladistics. 1989. V. 5. P. 164-166.
11. Vetriani C., Jannasch H.W., MacGregor B., Stahl D.A., Reysenbach A.-L. Population structure and phylogenetic chracterization of marine benthic archaea in deep-sea sediments // Appl. Environ. Microbiol. 1999. V. 65. No 10. P. 4375-4384.
12. Thomsen T.R., Finster K., Ramsing N.B. Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment // Appl. Environ. Microbiol. 2001. V. 67. P. 1646-1656.
13. Takai K., Horikoshi K. Genetic diversity of Archaea in deep-sea hydrothermal vent environments // Genetics. 1999. V. 152. P. 1285-1297.
14. Schleper C., DeLond E.F., Preston C.M., Feldman F.A., Wu K.-Y., Swanson R.V. Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum // J. Bacteriol. 1998. V. 180. P. 5003-5009.
15. Preston C.M., Wu K.Y., Molinski T.F., DeLong E.F. A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov. // Proc. Natl. Acad. Sci. USA. 1996. V. 93. P. 6241-6246.
16. 1 transfer enzymes and coenzimes linking methylotrophic bacteria and methanotrophic archaea // Science. 1998. V. 281. P. 99-102.