-
1
-
-
0001095437
-
Studies on the gross structure, cross-linkages, and terminal sequences in ribonuclease
-
Anfinsen, C.B., Redfield, R.R., and Choate, W.L. 1954. Studies on the gross structure, cross-linkages, and terminal sequences in ribonuclease. J. Biol. Chem. 207: 201-210.
-
(1954)
J. Biol. Chem.
, vol.207
, pp. 201-210
-
-
Anfinsen, C.B.1
Redfield, R.R.2
Choate, W.L.3
-
2
-
-
0001396998
-
Statistical theory of superlattices
-
Bethe, H.A. 1935. Statistical theory of superlattices. Proc. Roy. Soc. Lond. A 150: 552-575.
-
(1935)
Proc. Roy. Soc. Lond. A
, vol.150
, pp. 552-575
-
-
Bethe, H.A.1
-
3
-
-
1842861587
-
Development of novel statistical potentials for protein fold recognition
-
Buchete, N.V., Straub, J.E., and Thirumalai, D. 2004. Development of novel statistical potentials for protein fold recognition. Curr. Opin. Struct. Biol. 14: 225-232.
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 225-232
-
-
Buchete, N.V.1
Straub, J.E.2
Thirumalai, D.3
-
4
-
-
0035936688
-
A Gaussian statistical mechanical model for the equilibrium thermodynamics of barnase folding
-
Crippen, G.M. 2001. A Gaussian statistical mechanical model for the equilibrium thermodynamics of barnase folding. J. Mol. Biol. 306: 565-573.
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 565-573
-
-
Crippen, G.M.1
-
5
-
-
4143082530
-
Native atom types for knowledge-based potentals: Application to binding energy prediction
-
Dominy, B.D. and Shakhnovich, E.I. 2004. Native atom types for knowledge-based potentals: Application to binding energy prediction. J. Med. Chem. 47: 4538-4558.
-
(2004)
J. Med. Chem.
, vol.47
, pp. 4538-4558
-
-
Dominy, B.D.1
Shakhnovich, E.I.2
-
6
-
-
0032561237
-
Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution
-
Duan, Y. and Kollman, P.A. 1998. Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution. Science 282: 740-744.
-
(1998)
Science
, vol.282
, pp. 740-744
-
-
Duan, Y.1
Kollman, P.A.2
-
7
-
-
0011560540
-
Monte-Carlo simulation of protein folding using a lattice model
-
Krigbaum, W.R., and Lin, S.F. 1982. Monte-Carlo simulation of protein folding using a lattice model. Macromolecules 15: 1135-1145.
-
(1982)
Macromolecules
, vol.15
, pp. 1135-1145
-
-
Krigbaum, W.R.1
Lin, S.F.2
-
8
-
-
0037117638
-
A structure-based method for derivation of all-atom potentials for protein folding
-
Kussell, E., Shimada, J., and Shakhnovich, E.I. 2002. A structure-based method for derivation of all-atom potentials for protein folding. Proc. Natl. Acad. Sci. 99: 5343-5348.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 5343-5348
-
-
Kussell, E.1
Shimada, J.2
Shakhnovich, E.I.3
-
9
-
-
0035882533
-
A distance-dependent atomic knowledgebased potential for improved protein structure selection
-
Lu, H. and Skolnick, J. 2001. A distance-dependent atomic knowledgebased potential for improved protein structure selection.Proteins 44: 223-232.
-
(2001)
Proteins
, vol.44
, pp. 223-232
-
-
Lu, H.1
Skolnick, J.2
-
10
-
-
0030596063
-
How to derive a protein folding potential? A new approach to an old problem
-
Mirny, L.A. and Shakhnovich, E.I. 1996. How to derive a protein folding potential? A new approach to an old problem. J. Mol. Biol. 264: 1164-1179.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 1164-1179
-
-
Mirny, L.A.1
Shakhnovich, E.I.2
-
11
-
-
33845377127
-
Estimation of effective interresidue contact energies from protein crystal-structures - Quasi-chemical approximation
-
Miyazawa, S. and Jernigan, R.L. 1985. Estimation of effective interresidue contact energies from protein crystal-structures - quasi-chemical approximation. Macromolecules 18: 534-552.
-
(1985)
Macromolecules
, vol.18
, pp. 534-552
-
-
Miyazawa, S.1
Jernigan, R.L.2
-
12
-
-
0033152803
-
Correlation between knowledge-based and detailed atomic potentials: Application to the unfolding of the GCN4 leucine zipper
-
Mohanty, D., Dominy, B.D., Kolinski, A., Brooks, C.L., and Skolnick, J. 1999. Correlation between knowledge-based and detailed atomic potentials: application to the unfolding of the GCN4 leucine zipper. Proteins 35: 447-452.
-
(1999)
Proteins
, vol.35
, pp. 447-452
-
-
Mohanty, D.1
Dominy, B.D.2
Kolinski, A.3
Brooks, C.L.4
Skolnick, J.5
-
13
-
-
0029987862
-
Energy functions that discriminate X-ray and near-native folds from well-constructed decoys
-
Park, B. and Levitt, M. 1996. Energy functions that discriminate X-ray and near-native folds from well-constructed decoys. J. Mol. Biol. 258: 367-392.
-
(1996)
J. Mol. Biol.
, vol.258
, pp. 367-392
-
-
Park, B.1
Levitt, M.2
-
14
-
-
0024357911
-
Formation of unique structure in polypeptide-chains theoretical investigation with the aid of a replica approach
-
Shakhnovich, E.I. and Gutin, A.M. 1989. Formation of unique structure in polypeptide-chains theoretical investigation with the aid of a replica approach. Biophys. Chem. 34: 187-199.
-
(1989)
Biophys. Chem.
, vol.34
, pp. 187-199
-
-
Shakhnovich, E.I.1
Gutin, A.M.2
-
15
-
-
0037143694
-
The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation
-
Shimada, J. and Shakhnovich, E.I. 2002. The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation. Proc. Natl. Acad. Sci. 99: 11175-11180.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 11175-11180
-
-
Shimada, J.1
Shakhnovich, E.I.2
-
16
-
-
0030983768
-
Derivation and testing of pair potentials for protein folding. When is the quasi-chemical approximation correct?
-
Skolnick, J., Jaroszewski, L., Kolinski, A., and Godzik, A. 1997. Derivation and testing of pair potentials for protein folding. When is the quasi-chemical approximation correct? Protein Sci. 6: 676-688.
-
(1997)
Protein Sci.
, vol.6
, pp. 676-688
-
-
Skolnick, J.1
Jaroszewski, L.2
Kolinski, A.3
Godzik, A.4
-
17
-
-
0033970623
-
Derivation of proteinspecific pair potentials based on weak sequence fragment similarity
-
Skolnick, J., Kolinski, A., and Ortiz, A. 2000. Derivation of proteinspecific pair potentials based on weak sequence fragment similarity. Proteins 38: 3-16.
-
(2000)
Proteins
, vol.38
, pp. 3-16
-
-
Skolnick, J.1
Kolinski, A.2
Ortiz, A.3
-
18
-
-
0034308163
-
Distance-dependent, pair potential for protein folding: Results from linear optimization
-
Tobi, D. and Elber, R. 2000. Distance-dependent, pair potential for protein folding: Results from linear optimization. Proteins 41: 40-46.
-
(2000)
Proteins
, vol.41
, pp. 40-46
-
-
Tobi, D.1
Elber, R.2
-
19
-
-
0034141931
-
Can a pairwise contact potential stabilize native protein folds against decoys obtained by threading?
-
Vendruscolo, M., Najmanovich, R., and Domany, E. 2000. Can a pairwise contact potential stabilize native protein folds against decoys obtained by threading? Proteins 38: 134-148.
-
(2000)
Proteins
, vol.38
, pp. 134-148
-
-
Vendruscolo, M.1
Najmanovich, R.2
Domany, E.3
-
20
-
-
0036838311
-
Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction
-
Zhou, H.Y. and Zhou, Y.Q. 2002. Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction. Protein Sci. 11: 2714-2726.
-
(2002)
Protein Sci.
, vol.11
, pp. 2714-2726
-
-
Zhou, H.Y.1
Zhou, Y.Q.2
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