-
1
-
-
0002006297
-
Are there pathways for protein folding?
-
Levinthal, C. (1968) Are there pathways for protein folding? J. Chem. Phys. 65, 44-45.
-
(1968)
J. Chem. Phys.
, vol.65
, pp. 44-45
-
-
Levinthal, C.1
-
2
-
-
0026595799
-
Levinthal's paradox
-
Zwanzig, R., Szabo, A., and Bagchi, B. (1992) Levinthal's paradox, Proc. Natl. Acad. Sci., U.S.A. 89, 20-22.
-
(1992)
Proc. Natl. Acad. Sci., U.S.A.
, vol.89
, pp. 20-22
-
-
Zwanzig, R.1
Szabo, A.2
Bagchi, B.3
-
4
-
-
84987322752
-
The circular dichroism spectrum and structure of unordered polypeptides and proteins
-
Krimm, S., and Tiffany, M. L. (1974) The circular dichroism spectrum and structure of unordered polypeptides and proteins, Isr. J. Chem. 12, 189-200.
-
(1974)
Isr. J. Chem.
, vol.12
, pp. 189-200
-
-
Krimm, S.1
Tiffany, M.L.2
-
5
-
-
0042701995
-
Investigations into sequence and conformational dependence of backbone entropy, inter-basin dynamics and the Flory isolated-pair hypothesis for peptides
-
Zaman, M. H., Shen, M. Y., Berry, R. S., Freed, K. F., and Sosnick, T. R. (2003) Investigations into sequence and conformational dependence of backbone entropy, inter-basin dynamics and the Flory isolated-pair hypothesis for peptides, J. Mol. Biol. 331, 693-711.
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 693-711
-
-
Zaman, M.H.1
Shen, M.Y.2
Berry, R.S.3
Freed, K.F.4
Sosnick, T.R.5
-
6
-
-
0033730431
-
The Flory isolated-pair hypothesis is not valid for polypeptide chains: Implications for protein folding
-
Pappu, R. V., Srinivasan, R., and Rose, G. D. (2000) The Flory isolated-pair hypothesis is not valid for polypeptide chains: implications for protein folding, Proc. Natl. Acad. Sci., U.S.A. 97, 12565-12570.
-
(2000)
Proc. Natl. Acad. Sci., U.S.A.
, vol.97
, pp. 12565-12570
-
-
Pappu, R.V.1
Srinivasan, R.2
Rose, G.D.3
-
7
-
-
0029978353
-
Analysis of main chain torsion angles in proteins: Prediction of NMR coupling constants for native and random coil conformations
-
Smith, L. J., Bolin, K. A., Schwalbe, H., MacArthur, M. W., Thornton, J. M., and Dobson, C. M. (1996) Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations, J. Mol. Biol. 255, 494-506.
-
(1996)
J. Mol. Biol.
, vol.255
, pp. 494-506
-
-
Smith, L.J.1
Bolin, K.A.2
Schwalbe, H.3
MacArthur, M.W.4
Thornton, J.M.5
Dobson, C.M.6
-
8
-
-
2542560465
-
Relationships between amino acid sequence and backbone torsion angle preferences
-
Keskin, O., Yuret, D., Gursoy, A., Turkay, M., and Erman, B. (2004) Relationships between amino acid sequence and backbone torsion angle preferences, Proteins 55, 992-998.
-
(2004)
Proteins
, vol.55
, pp. 992-998
-
-
Keskin, O.1
Yuret, D.2
Gursoy, A.3
Turkay, M.4
Erman, B.5
-
9
-
-
0030726550
-
NMR analysis of main-chain conformational preferences in an unfolded fibronectin-binding protein
-
Penkett, C. J., Redfield, C., Dodd, I., Hubbard, J., McBay, D. L., Mossakowska, D. E., Smith, R. A., Dobson, C. M., and Smith, L. J. (1997) NMR analysis of main-chain conformational preferences in an unfolded fibronectin-binding protein, J. Mol. Biol. 274, 152-159.
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 152-159
-
-
Penkett, C.J.1
Redfield, C.2
Dodd, I.3
Hubbard, J.4
McBay, D.L.5
Mossakowska, D.E.6
Smith, R.A.7
Dobson, C.M.8
Smith, L.J.9
-
10
-
-
0023555768
-
Further developments of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs
-
Gibrat, J. F., Garnier, J., and Robson, B. (1987) Further developments of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs, J. Mol. Biol. 198, 425-443.
-
(1987)
J. Mol. Biol.
, vol.198
, pp. 425-443
-
-
Gibrat, J.F.1
Garnier, J.2
Robson, B.3
-
11
-
-
0027407722
-
Estimation and use of protein backbone angle probabilities
-
Kang, H. S., Kurochkina, N. A., and Lee, B. (1993) Estimation and use of protein backbone angle probabilities, J. Mol. Biol. 229, 448-460.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 448-460
-
-
Kang, H.S.1
Kurochkina, N.A.2
Lee, B.3
-
13
-
-
0037456294
-
Computer simulation of met-enkephalin using explicit atom and united atom potentials: Similarities, differences, and suggestions for improvement
-
Zaman, M. H., Shen, M. Y., Berry, R. S., and Freed, K. F. (2003) Computer simulation of met-enkephalin using explicit atom and united atom potentials: Similarities, differences, and suggestions for improvement, J. Phys. Chem. B 107, 1685-1691.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 1685-1691
-
-
Zaman, M.H.1
Shen, M.Y.2
Berry, R.S.3
Freed, K.F.4
-
14
-
-
0038241788
-
Conformational dynamics of trialanine in water. 2. Comparison of AMBER, CHARMM, GROMOS, and OPLS force fields to NMR and infrared experiments
-
Mu, Y. G., Kosov, D. S., and Stock, G. (2003) Conformational dynamics of trialanine in water. 2. Comparison of AMBER, CHARMM, GROMOS, and OPLS force fields to NMR and infrared experiments, J. Phys. Chem. B 107, 5064-5073.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 5064-5073
-
-
Mu, Y.G.1
Kosov, D.S.2
Stock, G.3
-
15
-
-
0037441479
-
Comparison of a QM/MM force field and molecular mechanics force fields in simulations of alanine and glycine "dipeptides" (Ace-Ala-Nme and Ace-Gly-Nme) in water in relation to the problem of modeling the unfolded peptide backbone in solution
-
Hu, H., Elstner, M., and Hermans, J. (2003) Comparison of a QM/ MM force field and molecular mechanics force fields in simulations of alanine and glycine "dipeptides" (Ace-Ala-Nme and Ace-Gly-Nme) in water in relation to the problem of modeling the unfolded peptide backbone in solution, Proteins 50, 451-463.
-
(2003)
Proteins
, vol.50
, pp. 451-463
-
-
Hu, H.1
Elstner, M.2
Hermans, J.3
-
16
-
-
0037022662
-
Alpha-helical stabilization by side chain shielding of backbone hydrogen bonds
-
Garcia, A. E., and Sanbonmatsu, K. Y. (2002) Alpha-helical stabilization by side chain shielding of backbone hydrogen bonds. Proc. Natl. Acad. Sci., U.S.A. 99, 2782-2787.
-
(2002)
Proc. Natl. Acad. Sci., U.S.A.
, vol.99
, pp. 2782-2787
-
-
Garcia, A.E.1
Sanbonmatsu, K.Y.2
-
17
-
-
0028568650
-
Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrixes: Comparison with experimental scales
-
Munoz, V., and Serrano, L. (1994) Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrixes: comparison with experimental scales, Proteins 20, 301-311.
-
(1994)
Proteins
, vol.20
, pp. 301-311
-
-
Munoz, V.1
Serrano, L.2
-
18
-
-
0029147823
-
Intrinsic phi, psi propensities of amino acids, derived from the coil regions of known structures
-
Swindells, M. B., MacArthur, M. W., and Thornton, J. M. (1995) Intrinsic phi, psi propensities of amino acids, derived from the coil regions of known structures, Nat. Struct. Biol. 2, 596-603.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 596-603
-
-
Swindells, M.B.1
MacArthur, M.W.2
Thornton, J.M.3
-
19
-
-
0037610743
-
Role of backbone solvation and electrostatics in generating preferred peptide backbone conformations: Distributions of phi
-
Avbelj, F., and Baldwin, R. L. (2003) Role of backbone solvation and electrostatics in generating preferred peptide backbone conformations: distributions of phi, Proc. Natl. Acad. Sci., U.S.A. 100, 5742-5747.
-
(2003)
Proc. Natl. Acad. Sci., U.S.A.
, vol.100
, pp. 5742-5747
-
-
Avbelj, F.1
Baldwin, R.L.2
-
20
-
-
0015967881
-
Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins
-
Chou, P. Y., and Fasman, G. D. (1974) Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins, Biochemistry 13, 211-222.
-
(1974)
Biochemistry
, vol.13
, pp. 211-222
-
-
Chou, P.Y.1
Fasman, G.D.2
-
21
-
-
0030320442
-
The concept of a random coil. Residual structure in peptides and denatured proteins
-
Smith, L. J., Fiebig, K. M., Schwalbe, H., and Dobson, C. M. (1996) The concept of a random coil. Residual structure in peptides and denatured proteins, Fold Des. 1, R95-106.
-
(1996)
Fold Des.
, vol.1
-
-
Smith, L.J.1
Fiebig, K.M.2
Schwalbe, H.3
Dobson, C.M.4
-
22
-
-
0029063337
-
Empirical evaluation of the influence of side chains on the conformational entropy of the polypeptide backbone
-
Stites, W. E., and Pranata, J. (1995) Empirical evaluation of the influence of side chains on the conformational entropy of the polypeptide backbone, Proteins 22, 132-140.
-
(1995)
Proteins
, vol.22
, pp. 132-140
-
-
Stites, W.E.1
Pranata, J.2
-
23
-
-
0032769468
-
The "random-coil" state of proteins: Comparison of database statistics and molecular simulations
-
O'Connell, T. M., Wang, L., Tropsha, A., and Hermans, J. (1999) The "random-coil" state of proteins: comparison of database statistics and molecular simulations, Proteins 36, 407-418.
-
(1999)
Proteins
, vol.36
, pp. 407-418
-
-
O'Connell, T.M.1
Wang, L.2
Tropsha, A.3
Hermans, J.4
-
24
-
-
0036014776
-
Conformations of amino acids in proteins
-
Hovmoller, S., Zhou, T., and Ohlson, T. (2002) Conformations of amino acids in proteins, Acta Crystallogr. D Biol. Crystallogr. 58, 768-776.
-
(2002)
Acta Crystallogr. D Biol. Crystallogr.
, vol.58
, pp. 768-776
-
-
Hovmoller, S.1
Zhou, T.2
Ohlson, T.3
-
25
-
-
0028790273
-
Comparison between the phi distribution of the amino acids in the protein database and NMR data indicates that amino acids have various phi propensities in the random coil conformation
-
Serrano, L. (1995) Comparison between the phi distribution of the amino acids in the protein database and NMR data indicates that amino acids have various phi propensities in the random coil conformation, J. Mol. Biol. 254, 322-333.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 322-333
-
-
Serrano, L.1
-
26
-
-
0037047134
-
Polyproline II structure in a sequence of seven alanine residues
-
Shi, Z., Olson, C. A., Rose, G. D., Baldwin, R. L., and Kallenbach, N. R. (2002) Polyproline II structure in a sequence of seven alanine residues, Proc. Natl. Acad. Sci., U.S.A. 99, 9190-9195.
-
(2002)
Proc. Natl. Acad. Sci., U.S.A.
, vol.99
, pp. 9190-9195
-
-
Shi, Z.1
Olson, C.A.2
Rose, G.D.3
Baldwin, R.L.4
Kallenbach, N.R.5
-
27
-
-
0036400325
-
Is polyproline II a major backbone conformation in unfolded proteins?
-
Shi, Z., Woody, R. W., and Kallenbach, N. R. (2002) Is polyproline II a major backbone conformation in unfolded proteins? Adv. Prot. Chem. 62, 163-240.
-
(2002)
Adv. Prot. Chem.
, vol.62
, pp. 163-240
-
-
Shi, Z.1
Woody, R.W.2
Kallenbach, N.R.3
-
28
-
-
0038344087
-
Stable conformations of tripeptides in aqueous solution studied by UV circular dichroism spectroscopy
-
Eker, F., Griebenow, K., and Schweitzer-Stenner, R. (2003) Stable conformations of tripeptides in aqueous solution studied by UV circular dichroism spectroscopy. J. Am. Chem. Soc. 125, 8178-8185.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 8178-8185
-
-
Eker, F.1
Griebenow, K.2
Schweitzer-Stenner, R.3
-
29
-
-
0036784642
-
A simple model for polyproline II structure in unfolded states of alanine-based peptides
-
Pappu, R. V., and Rose, G. D. (2002) A simple model for polyproline II structure in unfolded states of alanine-based peptides, Protein Sci. 10, 2437-2455.
-
(2002)
Protein Sci.
, vol.10
, pp. 2437-2455
-
-
Pappu, R.V.1
Rose, G.D.2
-
30
-
-
0036402323
-
Determinants of the polyproline II helix from modeling studies
-
Creamer, T. P., and Campbell, M. N. (2002) Determinants of the polyproline II helix from modeling studies, Adv. Protein Chem. 62, 263-282.
-
(2002)
Adv. Protein Chem.
, vol.62
, pp. 263-282
-
-
Creamer, T.P.1
Campbell, M.N.2
-
31
-
-
0026355426
-
Reassessment of the random coil conformation: Vibrational CD study of proline oligopeptides and related polypeptides
-
Dukor, R. K., and Keiderling, T. A. (1991) Reassessment of the random coil conformation: vibrational CD study of proline oligopeptides and related polypeptides, Biopolymers 31, 1747-1761.
-
(1991)
Biopolymers
, vol.31
, pp. 1747-1761
-
-
Dukor, R.K.1
Keiderling, T.A.2
-
32
-
-
0029842116
-
Residual structure in unfolded proteins revealed by Raman optical activity
-
Wilson, G., Hecht, L., and Barron, L. D. (1996) Residual structure in unfolded proteins revealed by Raman optical activity, Biochemistry 35, 12518-12525.
-
(1996)
Biochemistry
, vol.35
, pp. 12518-12525
-
-
Wilson, G.1
Hecht, L.2
Barron, L.D.3
-
33
-
-
0036400324
-
Unfolded peptides and proteins studied with infrared absorption and vibrational circular dichroism spectra
-
Keiderling, T. A., and Xu, Q. (2002) Unfolded peptides and proteins studied with infrared absorption and vibrational circular dichroism spectra, Adv. Protein Chem. 62, 111-161.
-
(2002)
Adv. Protein Chem.
, vol.62
, pp. 111-161
-
-
Keiderling, T.A.1
Xu, Q.2
-
34
-
-
0036784642
-
A simple model for polyproline II structure in unfolded states of alanine-based peptides
-
Pappu, R. V., and Rose, G. D. (2002) A simple model for polyproline II structure in unfolded states of alanine-based peptides, Protein Sci. 11, 2437-2455.
-
(2002)
Protein Sci.
, vol.11
, pp. 2437-2455
-
-
Pappu, R.V.1
Rose, G.D.2
-
35
-
-
1542366657
-
Role of solvent in determining conformational preferences of alanine dipeptide in water
-
Drozdov, A. N., Grossfield, A., and Pappu, R. V. (2004) Role of solvent in determining conformational preferences of alanine dipeptide in water, J. Am. Chem. Soc. 126, 2574-2581.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 2574-2581
-
-
Drozdov, A.N.1
Grossfield, A.2
Pappu, R.V.3
-
36
-
-
1842500992
-
Polyproline II helix is the preferred conformation for unfolded polyalanine in water
-
Mezei, M., Fleming, P. J., Srinivasan, R., and Rose, G. D. (2004) Polyproline II helix is the preferred conformation for unfolded polyalanine in water. Proteins 55, 502-507.
-
(2004)
Proteins
, vol.55
, pp. 502-507
-
-
Mezei, M.1
Fleming, P.J.2
Srinivasan, R.3
Rose, G.D.4
-
37
-
-
1842500993
-
Unfolded state of polyalanine is a segmented polyproline II helix
-
Kentsis, A., Mezei, M., Gindin, T., and Osman, R. (2004) Unfolded state of polyalanine is a segmented polyproline II helix, Proteins 55, 493-501.
-
(2004)
Proteins
, vol.55
, pp. 493-501
-
-
Kentsis, A.1
Mezei, M.2
Gindin, T.3
Osman, R.4
-
38
-
-
0345862082
-
Characterization of nonalpha helical conformations in Ala peptides
-
Garcia, A. E. (2004) Characterization of nonalpha helical conformations in Ala peptides, Polymer 45, 669-676.
-
(2004)
Polymer
, vol.45
, pp. 669-676
-
-
Garcia, A.E.1
-
39
-
-
2442522724
-
Short sequences of nonproline residues can adopt the polyproline II helical conformation
-
Chellgren, B. W., and Creamer, T. P. (2004) Short sequences of nonproline residues can adopt the polyproline II helical conformation, Biochemistry 43, 5864-5869.
-
(2004)
Biochemistry
, vol.43
, pp. 5864-5869
-
-
Chellgren, B.W.1
Creamer, T.P.2
-
40
-
-
0041319047
-
Host-guest scale of left-handed polyproline II helix formation
-
Rucker, A. L., Pager, C. T., Campbell, M. N., Qualls, J. E., and Creamer, T. P. (2003) Host-guest scale of left-handed polyproline II helix formation, Proteins 53, 68-75.
-
(2003)
Proteins
, vol.53
, pp. 68-75
-
-
Rucker, A.L.1
Pager, C.T.2
Campbell, M.N.3
Qualls, J.E.4
Creamer, T.P.5
-
41
-
-
0035807931
-
Host-guest study of left-handed polyproline II helix formation
-
Kelly, M. A., Chellgren, B. W., Rucker, A. L., Troutman, J. M., Fried, M. G., Miller, A. F., and Creamer, T. P. (2001) Host-guest study of left-handed polyproline II helix formation, Biochemistry 40, 14376-14383.
-
(2001)
Biochemistry
, vol.40
, pp. 14376-14383
-
-
Kelly, M.A.1
Chellgren, B.W.2
Rucker, A.L.3
Troutman, J.M.4
Fried, M.G.5
Miller, A.F.6
Creamer, T.P.7
-
42
-
-
0027474991
-
Left-handed polyproline II helices commonly occur in globular proteins
-
Adzhubei, A. A., and Sternberg, M. J. (1993) Left-handed polyproline II helices commonly occur in globular proteins, J. Mol. Biol. 229, 472-493.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 472-493
-
-
Adzhubei, A.A.1
Sternberg, M.J.2
-
43
-
-
1342268081
-
Steric restrictions in protein folding: An alpha-helix cannot be followed by a contiguous beta-strand
-
Fitzkee, N. C., and Rose, G. D. (2004) Steric restrictions in protein folding: an alpha-helix cannot be followed by a contiguous beta-strand, Protein Sci. 13, 633-639.
-
(2004)
Protein Sci.
, vol.13
, pp. 633-639
-
-
Fitzkee, N.C.1
Rose, G.D.2
-
44
-
-
0043180474
-
PISCES: A protein sequence culling server
-
Wang, G., and Dunbrack, R. L., Jr. (2003) PISCES: a protein sequence culling server, Bioinformatics 19, 1589-1591.
-
(2003)
Bioinformatics
, vol.19
, pp. 1589-1591
-
-
Wang, G.1
Dunbrack Jr., R.L.2
-
45
-
-
0021755764
-
Solvent accessible surface area and excluded volume in proteins. Analytical equations for overlapping spheres and implications for the hydrophobic effect
-
Richmond, T. J. (1984) Solvent accessible surface area and excluded volume in proteins. Analytical equations for overlapping spheres and implications for the hydrophobic effect, J. Mol. Biol. 178, 63-89.
-
(1984)
J. Mol. Biol.
, vol.178
, pp. 63-89
-
-
Richmond, T.J.1
-
46
-
-
0037441653
-
Structure validation by Calpha geometry: Phi, psi and Cbeta deviation
-
Lovell, S. C., Davis, I. W., Arendall, W. B., 3rd, de Bakker, P. I., Word, J. M., Prisant, M. G., Richardson, J. S., and Richardson, D. C. (2003) Structure validation by Calpha geometry: phi, psi and Cbeta deviation, Proteins 50, 437-450.
-
(2003)
Proteins
, vol.50
, pp. 437-450
-
-
Lovell, S.C.1
Davis, I.W.2
Arendall III, W.B.3
De Bakker, P.I.4
Word, J.M.5
Prisant, M.G.6
Richardson, J.S.7
Richardson, D.C.8
-
47
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W., and Sander, C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features, Biopolymers 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
48
-
-
0028226386
-
Hydrogen bond strength and beta-sheet propensities: The role of a side chain blocking effect
-
Bai, Y., and Englander, S. W. (1994) Hydrogen bond strength and beta-sheet propensities: the role of a side chain blocking effect, Proteins 18, 262-266.
-
(1994)
Proteins
, vol.18
, pp. 262-266
-
-
Bai, Y.1
Englander, S.W.2
-
49
-
-
0031808074
-
A helix propensity scale based on experimental studies of peptides and proteins
-
Pace, C. N., and Scholtz, J. M. (1998) A helix propensity scale based on experimental studies of peptides and proteins, Biophys. J. 75, 422-427.
-
(1998)
Biophys. J.
, vol.75
, pp. 422-427
-
-
Pace, C.N.1
Scholtz, J.M.2
-
50
-
-
0028175780
-
A thermodynamic scale for the beta-sheet forming tendencies of the amino acids
-
Smith, C. K., Withka, J. M., and Regan, L. (1994) A thermodynamic scale for the beta-sheet forming tendencies of the amino acids, Biochemistry 33, 5510-5517.
-
(1994)
Biochemistry
, vol.33
, pp. 5510-5517
-
-
Smith, C.K.1
Withka, J.M.2
Regan, L.3
-
51
-
-
0028792105
-
Guidelines for protein design: The energetics of beta sheet side chain interactions
-
Smith, C. K., and Regan, L. (1995) Guidelines for protein design: the energetics of beta sheet side chain interactions, Science 270, 980-982.
-
(1995)
Science
, vol.270
, pp. 980-982
-
-
Smith, C.K.1
Regan, L.2
-
52
-
-
0027998757
-
Context is a major determinant of beta-sheet propensity
-
Minor, D. L., Jr., and Kim, P. S. (1994) Context is a major determinant of beta-sheet propensity, Nature 371, 264-267.
-
(1994)
Nature
, vol.371
, pp. 264-267
-
-
Minor Jr., D.L.1
Kim, P.S.2
-
53
-
-
0025370815
-
Dominant forces in protein folding
-
Dill, K. A. (1990) Dominant forces in protein folding. Biochemistry 29, 7133-7155.
-
(1990)
Biochemistry
, vol.29
, pp. 7133-7155
-
-
Dill, K.A.1
-
54
-
-
0033529861
-
Intrinsic beta-sheet propensities result from van der Waals interactions between side chains and the local backbone
-
Street, A. G., and Mayo, S. L. (1999) Intrinsic beta-sheet propensities result from van der Waals interactions between side chains and the local backbone, Proc. Natl. Acad. Sci., U.S.A. 96, 9074-9076.
-
(1999)
Proc. Natl. Acad. Sci., U.S.A.
, vol.96
, pp. 9074-9076
-
-
Street, A.G.1
Mayo, S.L.2
-
55
-
-
0029900846
-
The magnitude of the backbone conformational entropy change in protein folding
-
D'Aquino, J. A., Gomez, J., Hilser, V. J., Lee, K. H., Amzel, L. M., and Freire, E. (1996) The magnitude of the backbone conformational entropy change in protein folding, Proteins 25, 143-156.
-
(1996)
Proteins
, vol.25
, pp. 143-156
-
-
D'Aquino, J.A.1
Gomez, J.2
Hilser, V.J.3
Lee, K.H.4
Amzel, L.M.5
Freire, E.6
-
56
-
-
0028178865
-
Alpha-helix-forming propensities in peptides and proteins
-
Creamer, T. P., and Rose, G. D. (1994) Alpha-helix-forming propensities in peptides and proteins, Proteins 19, 85-97.
-
(1994)
Proteins
, vol.19
, pp. 85-97
-
-
Creamer, T.P.1
Rose, G.D.2
-
58
-
-
7044264212
-
Look-up tables for protein solvent accessibility prediction and nearest neighbor effect analysis
-
Wang, J. Y., Ahmad, S., Gromiha, M. M., and Sarai, A. (2004) Look-up tables for protein solvent accessibility prediction and nearest neighbor effect analysis, Biopolymers 75, 209-216.
-
(2004)
Biopolymers
, vol.75
, pp. 209-216
-
-
Wang, J.Y.1
Ahmad, S.2
Gromiha, M.M.3
Sarai, A.4
-
59
-
-
0000668407
-
Theory of the phase transition between helix and random coil in polypeptide chains
-
Zimm, G. H., and Bragg, J. K. (1959) Theory of the phase transition between helix and random coil in polypeptide chains, J. Chem. Phys. 31, 526-535.
-
(1959)
J. Chem. Phys.
, vol.31
, pp. 526-535
-
-
Zimm, G.H.1
Bragg, J.K.2
-
60
-
-
0000333671
-
On the theory of the helix-coil transition in polypeptides
-
Lifson, S., and Roig, A. (1961) On the theory of the helix-coil transition in polypeptides, J. Chem. Phys. 34, 1963-1974.
-
(1961)
J. Chem. Phys.
, vol.34
, pp. 1963-1974
-
-
Lifson, S.1
Roig, A.2
-
61
-
-
84984083490
-
Statistical mechanics of noncovalent bonds in polyamino acids. 4. Matrix treatment of hydrophobic bonds in random coil and of helix-coil transition for chains of arbitrary length
-
Poland, D. C., and Scheraga, H. A. (1965) Statistical Mechanics of Noncovalent Bonds in Polyamino Acids. 4. Matrix Treatment of Hydrophobic Bonds in Random Coil and of Helix-Coil Transition for Chains of Arbitrary Length, Biopolymers 3, 315.
-
(1965)
Biopolymers
, vol.3
, pp. 315
-
-
Poland, D.C.1
Scheraga, H.A.2
-
62
-
-
0016089450
-
Molecular theory of helix-coil transition in poly(amino acids). 4. Evaluation and analysis of S for poly(L-valine) in absence and presence of water
-
Go, M., Hesselin, F. T., Go, N., and Scheraga, H. A. (1974) Molecular Theory of Helix-Coil Transition in Poly(Amino Acids). 4. Evaluation and Analysis of S for Poly(L-Valine) in Absence and Presence of Water, Macromolecules 7, 459-467.
-
(1974)
Macromolecules
, vol.7
, pp. 459-467
-
-
Go, M.1
Hesselin, F.T.2
Go, N.3
Scheraga, H.A.4
-
63
-
-
0032972986
-
Is protein folding hierarchic? I. Local structure and peptide folding
-
Baldwin, R. L., and Rose, G. D. (1999) Is protein folding hierarchic? I. Local structure and peptide folding. Trends Biochem Sci 24, 26-33.
-
(1999)
Trends Biochem. Sci.
, vol.24
, pp. 26-33
-
-
Baldwin, R.L.1
Rose, G.D.2
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