메뉴 건너뛰기




Volumn 11, Issue 7, 2005, Pages 1012-1016

NMR spectroscopy of RNA duplexes containing pseudouridine in supercooled water

Author keywords

Branch site; Imino protons; NMR; Pseudouridine; RNA; Supercooled water

Indexed keywords

HYDROGEN; IMINE; MESSENGER RNA; PROTON; PSEUDOURIDINE; RNA; WATER;

EID: 22244447464     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1261/rna.2270205     Document Type: Article
Times cited : (18)

References (22)
  • 2
    • 0028239805 scopus 로고
    • Crystal structure of unmodified tRNA(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure
    • Arnez, J.G. and Steitz, T.A. 1994. Crystal structure of unmodified tRNA(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure. Biochemistry 33: 7560-7567.
    • (1994) Biochemistry , vol.33 , pp. 7560-7567
    • Arnez, J.G.1    Steitz, T.A.2
  • 3
    • 0037073873 scopus 로고    scopus 로고
    • Synthesis of helix 69 of Escherichia coli 23S rRNA containing its natural modified nucleosides, m(3)ψ and ψ
    • Chui, H.M., Desaulniers, J.P., Scaringe, S.A., and Chow, C.S. 2002. Synthesis of helix 69 of Escherichia coli 23S rRNA containing its natural modified nucleosides, m(3)ψ and ψ. J. Org. Chem. 67: 8847-8854.
    • (2002) J. Org. Chem. , vol.67 , pp. 8847-8854
    • Chui, H.M.1    Desaulniers, J.P.2    Scaringe, S.A.3    Chow, C.S.4
  • 4
    • 0025922011 scopus 로고
    • 15N NMR studies of Escherichia coli tRNA(Phe) from hisT mutants: A structural role for pseudouridine
    • 15N NMR studies of Escherichia coli tRNA(Phe) from hisT mutants: A structural role for pseudouridine. Biochemistry 30: 4223-4231.
    • (1991) Biochemistry , vol.30 , pp. 4223-4231
    • Davis, D.R.1    Poulter, C.D.2
  • 5
    • 0033534387 scopus 로고    scopus 로고
    • Lys,3 by an A+-C base-pair and by pseudouridine
    • Lys,3 by an A+-C base-pair and by pseudouridine.J. Mol. Biol. 285: 115-131.
    • (1999) J. Mol. Biol. , vol.285 , pp. 115-131
    • Durant, P.C.1    Davis, D.R.2
  • 6
    • 0025805268 scopus 로고
    • Properties of a U1/mRNA 5′ splice site duplex containing pseudouridine as measured by thermodynamic and NMR methods
    • Hall, K.B. and McLaughlin, L.W. 1991. Properties of a U1/mRNA 5′ splice site duplex containing pseudouridine as measured by thermodynamic and NMR methods. Biochemistry 30: 1795-1801.
    • (1991) Biochemistry , vol.30 , pp. 1795-1801
    • Hall, K.B.1    McLaughlin, L.W.2
  • 7
    • 0026505114 scopus 로고
    • Properties of pseudouridine N1 imino protons located in the major groove of an A-form RNA duplex
    • _. 1992. Properties of pseudouridine N1 imino protons located in the major groove of an A-form RNA duplex. Nucleic Acids Res. 20: 1883-1889.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1883-1889
  • 8
    • 0030797606 scopus 로고    scopus 로고
    • Application of phase-modulated CLEAN chemical EXchange spectroscopy (CLEANEX-PM) to detect water-protein proton exchange and intermolecular NOEs
    • Hwang, T.L., Mori, S., Shaka, A.J., and vanZijl, P.C.M. 1997. Application of phase-modulated CLEAN chemical EXchange spectroscopy (CLEANEX-PM) to detect water-protein proton exchange and intermolecular NOEs. J. Am. Chem. Soc. 119: 6203-6204.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 6203-6204
    • Hwang, T.L.1    Mori, S.2    Shaka, A.J.3    Vanzijl, P.C.M.4
  • 9
    • 0035807848 scopus 로고    scopus 로고
    • Structure of SL4 RNA from the HIV-1 packaging signal
    • Kerwood, D.J., Cavaluzzi, M.J., and Borer, P.N. 2001. Structure of SL4 RNA from the HIV-1 packaging signal. Biochemistry 40: 14518-14529.
    • (2001) Biochemistry , vol.40 , pp. 14518-14529
    • Kerwood, D.J.1    Cavaluzzi, M.J.2    Borer, P.N.3
  • 10
    • 0028631131 scopus 로고
    • Effect of nucleoside modifications on the structure and thermal stability of Escherichia coli valine tRNA
    • Kintanar, A., Yue, D., and Horowitz, J. 1994. Effect of nucleoside modifications on the structure and thermal stability of Escherichia coli valine tRNA. Biochimie 76: 1192-1204.
    • (1994) Biochimie , vol.76 , pp. 1192-1204
    • Kintanar, A.1    Yue, D.2    Horowitz, J.3
  • 11
    • 0037447130 scopus 로고    scopus 로고
    • Pseudouridylation (ψ) of U2 snRNA in S. cerevisiae is catalyzed by an RNA-independent mechanism
    • Ma, X., Zhao, X., and Yu, Y.T. 2003. Pseudouridylation (ψ) of U2 snRNA in S. cerevisiae is catalyzed by an RNA-independent mechanism. EMBO J. 22: 1889-1897.
    • (2003) EMBO J. , vol.22 , pp. 1889-1897
    • Ma, X.1    Zhao, X.2    Yu, Y.T.3
  • 12
    • 0034975454 scopus 로고    scopus 로고
    • A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branchsite architecture
    • Newby, M.I. and Greenbaum, N.L. 2001. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branchsite architecture. RNA 7: 833-845.
    • (2001) RNA , vol.7 , pp. 833-845
    • Newby, M.I.1    Greenbaum, N.L.2
  • 13
    • 0036789890 scopus 로고    scopus 로고
    • Investigation of Overhauser effects between pseudouridine and water protons in RNA helices
    • _. 2002a. Investigation of Overhauser effects between pseudouridine and water protons in RNA helices. Proc. Natl. Acad. Sci. 99: 12697-12702.
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 12697-12702
  • 14
    • 0036896469 scopus 로고    scopus 로고
    • Sculpting of the spliceosomal branch site recognition motif by a conserved pseudouridine
    • _. 2002b. Sculpting of the spliceosomal branch site recognition motif by a conserved pseudouridine. Nat. Struct. Biol. 9: 958-965.
    • (2002) Nat. Struct. Biol. , vol.9 , pp. 958-965
  • 15
    • 0029120978 scopus 로고
    • Terminal base pairs of oligodeoxynucleotides: Imino proton exchange and fraying
    • Nonin, S., Leroy, J.L., and Gueron, M. 1995. Terminal base pairs of oligodeoxynucleotides: Imino proton exchange and fraying. Biochemistry 34: 10652-10659.
    • (1995) Biochemistry , vol.34 , pp. 10652-10659
    • Nonin, S.1    Leroy, J.L.2    Gueron, M.3
  • 16
    • 0028421133 scopus 로고
    • NMR spectroscopy of hydroxyl protons in supercooled carbohydrates
    • Poppe, L. and van Halbeek, H. 1994. NMR spectroscopy of hydroxyl protons in supercooled carbohydrates. Nat. Struct. Biol. 1: 215-216.
    • (1994) Nat. Struct. Biol. , vol.1 , pp. 215-216
    • Poppe, L.1    Van Halbeek, H.2
  • 18
    • 0035941549 scopus 로고    scopus 로고
    • Aromatic ring-flipping in supercooled water: Implications for NMR-based structural biology of proteins
    • Skalicky, J.J., Mills, J.L., Sharma, S., and Szyperski, T. 2001. Aromatic ring-flipping in supercooled water: Implications for NMR-based structural biology of proteins. J. Am. Chem. Soc. 123: 388-397.
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 388-397
    • Skalicky, J.J.1    Mills, J.L.2    Sharma, S.3    Szyperski, T.4
  • 19
    • 0000521134 scopus 로고
    • Spin-echo water suppression for the generation of pure-phase two-dimensional NMR-spectra
    • Sklenár, V. and Bax, A. 1987. Spin-echo water suppression for the generation of pure-phase two-dimensional NMR-spectra. J. Magn. Reson. 74: 469-479.
    • (1987) J. Magn. Reson. , vol.74 , pp. 469-479
    • Sklenár, V.1    Bax, A.2
  • 22
    • 0032189145 scopus 로고    scopus 로고
    • Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing
    • Yu, Y.T., Shu, M.D., and Steitz, J.A. 1998. Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing. EMBO J. 17: 5783-5795.
    • (1998) EMBO J. , vol.17 , pp. 5783-5795
    • Yu, Y.T.1    Shu, M.D.2    Steitz, J.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.