Comparison of linear weighting schemes for perfect match and mismatch gene expression levels from microarray data

American Journal of PharmacoGenomics

Volumn 5, Issue 3, 2005, Pages 197-205

  Beasley, T Mark ^a   Holt, Janet K ^b   Allison, David B ^a  

^a UNIVERSITY OF ALABAMA AT BIRMINGHAM   (United States)

^b Northern Illinois University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CORRELATION ANALYSIS; COVARIANCE; DATA ANALYSIS; DNA MICROARRAY; GENE EXPRESSION; GENE PROBE; GENETIC ANALYSIS; PRIORITY JOURNAL; STATISTICAL MODEL;

ANALYSIS OF VARIANCE; DATA INTERPRETATION, STATISTICAL; GENE EXPRESSION PROFILING; LINEAR MODELS; MODELS, STATISTICAL; MOLECULAR PROBE TECHNIQUES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHARMACOGENETICS; RNA, MESSENGER;

EID: 22244444512     PISSN: 11752203     EISSN: None     Source Type: Journal    
DOI: 10.2165/00129785-200505030-00006     Document Type: Article

References (9)

1. Chu TM, Wei B, Wolfinger R. A systematic statistical linear modeling approach to oligonucleotide array experiments. Math Biosci 2002; 176: 35-51
2. Li C, Wong W. Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci U S A 2001; 98: 31-6
3. Irizarry RA, Hobbs B, Collin F, et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003; 4: 249-64
4. Naef F, Lim DA, Patil N, et al. DNA hybridization to mismatched templates: a chip study. Phys Rev E Stat Nonlin Soft Matter Phys 2002; 65 (4 Pt 1): 040902. Epub 2002 Apr 9
5. Efron B, Tibshirani R, Storey J, etal. Empirical Bayes analysis of a microarray experiment. J Ame Stat Assoc 2001; 96: 1151-60
6. Arvey R, Cole D, Hazucha J, et al. Statistical power of training evaluation designs. Personal Psych 1985; 38: 493-507
7. Cole D. Statistics for small groups: the power of the pretest. J Assoc Pers Sev Handicaps 1988; 13: 142-6
8. McDonald RP. Test theory: a unified approach. Mahwah (NJ): Erlbaum, 1999
9. Allison DB, Paultre F, Goran MI, et al. Statistical considerations regarding the use of ratios to adjust data. Int J Obes Relat Metab Disord 1995; 19: 644-52