Microsatellites of Laminaria digitata tested in Lessonia nigrescens: Evaluation and improvement of cross amplification between kelps of two different families

Journal of Applied Phycology

Volumn 17, Issue 3, 2005, Pages 245-253

  Martínez, Enrique A ^a   Cárdenas, Leyla ^b   Figueroa, Cecilia ^b   Vidal, Rodrigo U ^c   Billot, Claire ^d  

^a DEPARTAMENTO DE BIOLOGÍA   (Chile)

^b PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE   (Chile)

^c UNIVERSIDAD DE SANTIAGO DE CHILE   (Chile)

^d CIRAD   (France)

Author keywords

Brown alga; Intertidal kelp; Laminariaceae; Laminarian seaweeds; Lessoniaceae; Mutated loci; STR

Indexed keywords

BROWN ALGA;

ALGAE; LAMINARIA; LAMINARIA DIGITATA; LAMINARIACEAE; LESSONIA NIGRESCENS; LESSONIACEAE; PHAEOPHYCEAE;

EID: 22144479439     PISSN: 09218971     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10811-005-3750-5     Document Type: Article

References (29)

1. Alström-Rapaport C, Leskinen E (2002) Development of microsatellites markers in the green algae Enteromorpha intestinalis (Chlorophyta). Mol. Ecol. Notes 2: 581-583.
2. Amos W (1999) A comparative approach to the study of microsatellite evolution. in: Goldstein DB, Schlötterer C (eds.), Microsatellites, Evolution and Applications, Oxford University Press, NY, pp. 66-79.
3. Billot C, Rousvoal S, Estoup A, Epplen JT, Saumitou-Laprade P, Valero M, Kloareg B (1998) Isolation and characterization of microsatellite markers in the nuclear genome of the brown alga Laminaria digitata (Phaeophyta). Mol. Ecol. 7: 1778-1780
4. Bold HC, Wynne MJ (1985) Introduction to the Algae: Structure and Reproduction. 2nd Edn. Prentice-Hall Inc., Englewood Cliffs, NJ, pp. 720.
5. Camus P, Martínez E (1994). The exploitation of brown algae in Chile. Appl. Phycol. Forum 11: 4-5.
6. Castilla JC, Camus P (1992) The Humboldt-El Niño scenario: Coastal benthic resources and anthropogenic influences, with particular reference to the 1982/83 ENSO. In Payne AIL, Brink KH, Mann KH, Hilborn R (eds). Benguela Trophic Functioning. S. Afr. J. mar. Sci. 12: 703-712.
7. Coyer JA, Veldsink JH, Jones K, Stam WT, Olsen JL (2002) Characterization of microsatellite loci in the marine seaweeds, Fucus serratus and F. evanescens (Heterokontophyta; Fucaceae). Mol. Ecol. Notes 2: 35-37.
8. Don RH, Cox PT, Wainwright BJ, Baker K, Mattick JS (1991) 'Touchdown' PCR to circumvent spurious priming during gene amplification. Nucleic Ac. Res. 19: 4008.
9. Engel CR, Brawley SH, Edwards KJ, Serrão E (2003) Isolation and cross-species amplification of microsatellite loci from the fucoid seaweeds Fucus vesiculosus, F. serratus and Ascophyllum nodosum (Heterokontophyta, Fucaceae). Mol. Ecol. Notes 3: 180-182.
10. Faugeron S, Martínez EA, Correa JA, Cárdenas L, Destombe C, Valero M (2004) Reduced genetic diversity and in creased population differentiation in peripheral and over-harvested populations of Gigartina skottsbergii (Rhodophyta, Gigartinales) in southern Chile. J. Phycol. 40: 454-462.
11. Goldstein DB, Schlötterer C (1999) Microsatellites. Evolution and Applications. Oxford University Press, NY: pp. 352
12. Hancock JM (1999) Microsatellites and other simple sequences: genomic context and mutational mechanisms. In Goldstein DB, Schlötterer C (eds), Microsatellites, Evolution and Applications Oxford University Press, NY: 1-9.
13. Jarne P, Lagoda JL (1996) Microsatellites, from molecules to populations and back. Trends Ecol. Evol. 11, 424-429.
14. Karhu A, Dieterich J-H, Savolainen O (2000) Rapid expansion of microsatellite sequences in pines. Mol. Biol. Evol. 17: 259-265.
15. Martínez EA (1999) Latitudinal differences in thermal tolerance among microscopic sporophytes of the kelp Lessonia nigrescens (Phaeophyta: Laminariales). Pacific Science 53: 74-81
16. Martínez EA, Cárdenas L, Pinto R (2003) Recovery and genetic diversity in the intertidal kelp Lessonia nigrescens 20 year's after El Niño 1982/83 J. Phycol. 39: 504-508.
17. McDermid KJ, Stuercke B (2003) Nutritional composition of edible Hawaiian seaweeds. J. appl. Phycol. 15: 513-524.
18. Miller MP (1997) Tools for population genetic analysis (TFPGA) 1.3. A Windows program for the analysis of allozyme and molecular population genetic data. Computer software distributed by author.
19. Olsen JL, Sadowski G, Stam WT, Veldsink JH, Jones K (2002) Characterization of microsatellite loci n the marine seaweed Ascophyllum nodosum (Phaeophyceae; Fucales). Mol. Ecol. Notes 2: 33-34.
20. Saunders GW, Druehl LD (1993) Nucleotide sequences of the internal transcribed spacers and 5.8 rRNA genes from Alaria marginata and Postelsia palmaeformis (Phaeophyta: Laminariales). Mar. Biol. 115: 347-352.
21. Saunders GW, Kraft G, Tan IH, Druehl LD (1992) When is a family not a family? Biosystems 28: 109-116.
22. Uchida M, Hamakasu H, Satoh Y, Murata M (2004a) Combinations of lactic acid bacteria and yeast suitable for preparation of marine silage. Fish. Sci. 70: 508-518.
23. Uchida M, Murata M (2002) Fermentative preparation of single cell detritus from seaweed, Undaria pinnatifida, suitable as a replacement hatchery diet for unicellular algae. Aquaculture 207: 345-357.
24. Uchida M, Numaguchi K, Murata M (2004b) Mass preparation of marine silage from Undaria pinnatifida and its dietary effect for young pearl oysters. Fish. Sci. 70: 457-463.
25. Viard F, Franck P, Dubois M-P, Estoup A, Jarne P (1998) Variation of microsatellite size homoplasy across electromorphs, loci, and populations in three invertebrate species. J. Mol. Evol. 47: 42-51.
26. Wattier R, Dallas JF, Destombe C, Saumitou-Laprade P, Valero M (1997) Singles locus microsatellites in Gracilariales (Rhodophyta): High level of genetic variability within Gracilaria gracilis and conservation in related species. J. Phycol. 33: 868-880
27. Whitmer AC (2002) Microsatellite markers for the intertidal kelp Postelsia palmaeformis (Heterokontophyta; Laminariales). Mol. Ecol. Notes 2: 469-471.
28. Yoon HS, Lee JY, Boo SM, Bhattacharya D (2001) Phylogeny of Alariaceae, Laminariaceae, and Lessoniaceae (Phaeophyceae) based on plastid-encoded RuBisCo spacer and nuclear-encoded ITS sequence comparisons. Mol. Phyl. Evol. 21: 231-243.
29. Zane L, Bargelloni L, Patarnello T (2002) Strategies for microsatellite isolation: A review. Mol. Ecol. 11: 1-6.