Uncultivated phylotypes and newly named species associated with primary and persistent endodontic infections

Journal of Clinical Microbiology

Volumn 43, Issue 7, 2005, Pages 3314-3319

  Siqueira Jr , J F ^a   Rocas I N ^a  

^a ESTÁCIO DE SÁ UNIVERSITY   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; RNA 16S;

ADULT; AGED; ARTICLE; BACTERIUM; BONE DESTRUCTION; CLINICAL ARTICLE; CONTROLLED STUDY; DIALISTER INVISUS; DNA ISOLATION; DNA SEQUENCE; ENDODONTICS; HUMAN; INFLAMMATORY DISEASE; MOUTH FLORA; NONHUMAN; OLSONELLA ULI; PATHOGENESIS; PERIRADICULAR DISEASE; PERSISTENT INFECTION; PHYLOTYPE; POLYMERASE CHAIN REACTION; PREVALENCE; PRIORITY JOURNAL; RNA SEQUENCE; SPECIES CULTIVATION; SPECIES DIFFERENCE; SYNERGISTES; TOOTH FILLING; TOOTH INFECTION; TOOTH ROOT CANAL;

ACIDAMINOCOCCACEAE; ACTINOBACTERIA; BACTERIA; CHRONIC DISEASE; CULTURE MEDIA; DENTAL PULP CAVITY; DENTAL PULP DISEASES; DNA PRIMERS; DNA, BACTERIAL; DNA, RIBOSOMAL; HUMANS; PERIAPICAL DISEASES; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S;

DIALISTER INVISUS; OLSENELLA ULI; SYNERGISTES;

EID: 22144452913     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.43.7.3314-3319.2005     Document Type: Article

References (39)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Baumgartner, J. C., B. J. Watkins, K. S. Bae, and T. Xia. 1999. Association of black-pigmented bacteria with endodontic infections. J. Endod. 25:413-415.
3. Baumgartner, J. C., J. F. Siqueira, Jr., T. Xia, and I. N. Rôças. 2004. Geographical differences in bacteria detected in endodontic infections using polymerase chain reaction. J. Endod. 30:141-144.
4. Brinig, M. M., P. W. Lepp, C. C. Ouverney, G. C. Armitage, and D. A. Relman. 2003. Prevalence of bacteria of division TM7 in human subgingival plaque and their association with disease. Appl. Environ. Microbiol. 69: 1687-1694.
5. Chavez de Paz, L. E., A. Molander, and G. Dahlen. 2004. Gram-positive rods prevailing in teeth with apical periodontitis undergoing root canal treatment. Int. Endod. J. 37:579-587.
6. Conrads, G., S. E. Gharbia, K. Gulabivala, F. Lampert, and H. N. Shah. 1997. The use of a 16S rDNA PCR for the detection of endodontopathogenic bacteria. J. Endod. 23:433-438.
7. Dewhirst, F. E-, B. J. Paster, N. Tzellas, B. Coleman, J. Downes, D. A. Spratt, and W. G. Wade. 2001. Characterization of novel human oral isolates and cloned 16S rDNA sequences that fall in the family Coriobacteriaceae: description of Olsenella gen. nov., reclassification of Lactobacillus uli as Olsenella uli comb. nov. and description of Olsenella profusa sp. nov. Int. J. Syst. Evol. Microbiol. 51:1797-1804.
8. Downes, J., M. Munson, and W. G. Wade. 2003. Dialister invisus sp. nov., isolated from the human oral cavity. Int. J. Syst. Evol. Microbiol. 53:1937-1940.
9. Edwards, U., T. Rogall, H. Blöcker, M. Emde, and E. C. Bötter. 1989. Isolation and direct complete nucleottde determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res. 17:7843-7853.
10. Figdor, D. 2002. Microbial aetiology of endodontic treatment failure and pathogenic properties of selected species. Umea University odontological dissertations no. 79. Umea University, Umea, Sweden.
11. Fouad, A. F., J. Barry, M. Caimano, M. Clawson, Q. Zhu, R. Carver, K. Hazlett, and J. D. Radolf. 2002. PCR-based identification of bacteria associated with endodontic infections. J. Clin. Microbiol. 40:3223-3231.
12. Fouad, A. F., K.-Y. Kum, M. L. Clawson, J. Barry, C. Abenoja, Q. Zhu, M. Caimano, and J. D. Radolf. 2003. Molecular characterization of the presence of Eubacterium spp. and Streptococcus spp. in endodontic infections. Oral Microbiol. Immunol. 18:249-255.
13. Haapasalo, M. 1989. Bacteroides spp. in dental root canal infections. Endod. Dent. Traumatol. 5:1-10.
14. Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
15. Harper-Owen, R., D. Dymock, V. Booth, A. J. Weightman, and W. G. Wade. 1999. Detection of unculturable bacteria in periodontal health and disease by PCR. J. Clin. Microbiol. 37:1469-1473.
16. Jung, I.-Y., B.-K. Choi, K.-Y. Kum, Y.-J. Yoo, T.-C. Yoon, S.-J. Lee, and C.-Y. Lee. 2001. Identification of oral spirochetes at the species level and their association with other bacteria in endodontic infections. Oral Surg. Oral Med. Oral Pathol. Oral Radiol. Endod. 92:329-334.
17. Razor, C. E., P. M. Mitchell, A. M. Lee, L. N. Stokes, W. J. Loesche, F. E. Dewhirst, and B. J. Paster. 2003. Diversity of bacterial populations on the tongue dorsa of patients with halitosis and healthy patients. J. Clin. Microbiol. 41:558-563.
18. Könönen, E., E. Eerola, E. V. G. Frandsen, J. Jalava, J. Mättö, S. Salmenlinna, and H. Jousimies-Somer. 1998. Phylogenetic characterization and proposal of a new pigmented species to the genus Prevotella: Prevotella pallens sp. nov. Int. J. Syst. Bacteriol. 48:47-51.
19. Kumar, P. S., A. L. Griffen, J. A. Barton, B. J. Paster, M. L. Moeschberger, and E. J. Leys. 2003. New bacterial species associated with chronic periodontitis. J. Dent. Res. 82:338-344.
20. Leys, E. J., S. R. Lyons, M. L. Moeschberger, R. W. Rumpf, and A. L. Griffen. 2002. Association of Bacteroides forsythus and a novel Bacteroides phylotype with periodontitis. J. Clin. Microbiol. 40:821-825.
21. Munson, M. A., A. Banerjec, T. F. Watson, and W. G. Wade. 2004. Molecular analysis of the microflora associated with dental caries. J. Clin. Microbiol. 42:3023-3029.
22. Munson, M. A., T. Pitt-Ford, B. Chong, A. Weightman, and W. G. Wade. 2002. Molecular and cultural analysis of the microflora associated with endodontic infections. J. Dent. Res. 81:761-766.
23. Paster, B. J., S. K. Boches, J. L. Galvin, R. E. Ericson, C. N. Lau, V. A. Levanos, A. Sahasrabudhe, and F. E. Dewhirst. 2001. Bacterial diversity in human subgingival plaque. J. Bacteriol. 183:3770-3783.
24. Paster, B. J., W. A. Falkler, Jr., C. O. Enwonwu, E. O. Idigbe, K. O. Savage, V. A. Levanos, M. A. Tamer, R. L. Ericson, C. N. Lau, and F. E. Dewhirst. 2002. Prevalent bacterial species and novel phylotypes in advanced noma lesions. J. Clin. Microbiol. 40:2187-2191.
25. Rôças, I. N., J. F. Siqueira, Jr., A. F. B. Andrade, and M. Uzeda. 2003. Oral treponemes in primary root canal infections as detected by nested PCR. Int. Endod. J. 36:20-26.
26. Sakamoto, M., Y. Huang, M. Umeda, I. Ishikawa, and Y. Benno. 2002. Detection of novel oral phylotypes associated with periodontitis. FEMS Microbiol. Lett. 217:65-69.
27. Siqueira, J. F., Jr. 2002. Endodontic infections: concepts, paradigms and perspectives. Oral Surg. Oral Med. Oral Pathol. Oral Radiol. Endod. 94: 281-293.
28. Siqueira, J. F., Jr., and I. N. Rôças. 2003. Detection of Filifactor alocis in endodontic infections associated with different forms of periradicular diseases. Oral Microbiol. Immunol. 18:263-265.
29. Siqueira, J. F., Jr., and I. N. Rôças. 2003. PCR-based identification of Treponema maltophilum, T. amylovorum, T. medium, and T. lecithinolyticum in primary root canal infections. Arch. Oral Biol. 48:495-502.
30. Siqueira, J. F., Jr., and I. N. Rôças. 2003. Positive and negative bacterial associations involving Dialister pneumosintes in primary endodontic infections. J. Endod. 29:438-441.
31. Siqueira, J. F., Jr., and I. N. Rôças. 2004. Nested PCR detection of Centipeda periodontii in primary endodontic infections. J. Endod. 30:135-137.
32. Siqueira, J. F., Jr., and I. N. Rôças. 2004. Polymerase chain reaction-based analysis of microorganisms associated with failed endodontic treatment. Oral Surg. Oral Med. Oral Pathol. Oral Radiol. Endod. 97:85-94.
33. Siqueira, J. F., Jr., I. N. Rôças, and A. S. Rosado. 2004. Investigation of bacterial communities associated with asymptomatic and symptomatic endodontic infections by DGGE fingerprinting approach. Oral Microbiol. Immunol. 19:363-370.
34. Siqueira, J. F., Jr., I. N. Rôças, R. Souto, M. Uzeda, and A. P. Colombo. 2000. Checkerboard DNA-DNA hybridization analysis of endodontic infections. Oral Surg. Oral Med. Oral Pathol. Oral Radiol. Endod. 89:744-748.
35. Sundqvist, G., D. Figdor, S. Persson, and U. Sjögren. 1998. Microbiologic analysis of teeth with failed endodontic treatment and the outcome of conservative re-treatment. Oral Surg. Oral Med. Oral Pathol. Oral Radiol. Endod. 85:86-93.
36. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
37. Tronstad, L., and P. T. Sunde. 2003. The evolving new understanding of endodontic infections. Endod. Top. 6:57-77.
38. Weisburg, W. G., S. M. Barns, D. A. Pelletier, and D. J. Lane. 1991. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173:697-703.
39. Xia, T., J. C. Baumgartner, and L. L. David. 2000. Isolation and identification of Prevotella tannerae from endodontic infections. Oral Microbiol. Immunol. 15:273-275.