Ontologies and semantic data integration

Drug Discovery Today

Volumn 10, Issue 14, 2005, Pages 1001-1007

  Gardner, Stephen P ^a  

^a BioWisdom Ltd   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL STRUCTURE; COMBINATORIAL CHEMISTRY; COMMERCIAL PHENOMENA; COMPUTER INTERFACE; COMPUTER LANGUAGE; COMPUTER PROGRAM; COMPUTER SYSTEM; DATA BASE; DRUG BIOAVAILABILITY; DRUG INDUSTRY; DRUG INFORMATION; DRUG MANUFACTURE; DRUG MONITORING; DRUG SAFETY; HEALTH MAINTENANCE ORGANIZATION; INFORMATION PROCESSING; MEDICAL INFORMATICS; MEDICAL TECHNOLOGY; ORGANIZATION; REVIEW; SCIENCE; SEMANTICS; STRUCTURE ANALYSIS; TECHNOLOGY;

DATABASES; MEDICAL INFORMATICS; SEMANTICS; SYSTEMS INTEGRATION;

EID: 22044451327     PISSN: 13596446     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1359-6446(05)03504-X     Document Type: Review

References (30)

1. P. Lyman, H.R. Varian How Much Information? 2003 (http://www.sims. berkeley.edu/research/projects/how-much-info-2003 )
2. Anon High Performance Drug Discovery Accenture 2001 http://www.accenture. com/xdoc/en/industries/hls/pharma/hpdd.pdf
3. J. Appleby What do you Believe When Drug Messages Conflict? USA Today December 2004 http://www.usatoday.com/money/industries/health/drugs/2004-12-26- crestor-cover_x.htm
4. Simmons, J. (2004) Pharma's annus horribilis: a world of hurt. Fortune 27 December
5. R. Baum Outlook for pharmaceuticals Chem. Eng. News 82 2004 3
6. Leaf C. (2004) Why the FDA keeps blowing it. Fortune 29 November
7. Abbasi K. (2004) Is drug regulation failing? BMJ DOI: 10.1136/bmj.329.7477.0-g (www.bmj.com )
8. Cutter Consortium (2002) Corporate use of data warehousing and enterprise analytic technologies http://www.the-infoshop.com/study/ cu11950_data_warehousing.html
9. T. Friedman Data integration forms the technology foundation of EIM 2005 http://www.gartner.com/research/spotlight/asset_120116_895.jsp, Gartner Group
10. T. Etzold SRS: information retrieval system for molecular biology data banks Methods Enzymol. 266 1996 114 128
11. S.P. Shah Atlas - a data warehouse for integrative bioinformatics BMC Bioinformatics 6 2005 34 49
12. L.M. Haas DiscoveryLink: a system for integrated access to life sciences data sources IBM Systems Journal 40 2001 489 511
13. R.D. Stevens myGrid: personalised bioinformatics on the information grid Bioinformatics 19 Suppl. 1 2003 i302 i304
14. HealthGrid Association and Cisco Systems (2004) HealthGrid - a summary http://whitepaper.healthgrid.org
15. I. Foster The grid: computing without bounds Sci. Am. 288 2003 78 85
16. J. Sowa Knowledge Representation Logical, Philosophical, and Computational Foundations 2000 Brooks/Cole
17. T. Berners-Lee The Semantic Web Sci. Am. 284 2001 34 43
18. N.F. Noy Protege-2000: an open-source ontology-development and knowledge-acquisition environment AMIA Annu. Symp. Proc 2003 953
19. P. Lambrix Evaluation of ontology development tools for bioinformatics Bioinformatics 19 2003 1564 1571
20. B. Smith Relations in biomedical ontologies Genome Biol 6 2005 R46
21. S. Schulze-Kremer Ontologies for molecular biology and bioinformatics In Silico Biol. 2 2002 179 193
22. C. Rosse, J.L.V. Mejino Jr A reference ontology for biomedical informatics: the foundational model of anatomy J. Biomed. Inform. 36 2003 478 500
23. The Gene Ontology Consortium Creating the gene ontology resource: design and implementation Genome Res. 11 2001 1425 1433
24. G.D. Bader BioPax: an OWL early adopter perspective 2004 http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0063/ w3c-position-paper_BioPAX_new.pdf
25. Hartel F. et al., (2004) OWL/RDF/LSID utilization in NCI cancer research infrastructure http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att- 0039/W3_Position_Paper.htm
26. P. Murray-Rust Representation and use of chemistry in the global electronic age Org. Biomol. Chem. 2 2004 3192 3203
27. D.M. Pisanelli Coping with medical polysemy in the Semantic Web: the role of ontologies Medinfo 11 2004 416 419
28. K. Forsberg, B. Andersson We believe RDF/OWL and LSID can help Pharma out from the InfoMaze! 2004 http://lists.w3.org/Archives/Public/public-swls-ws/ 2004Sep/att-0049/ We_believe_RDF__OWL_and_LSID_can_help_Pharma_out_from_the_InfoMaze__2004-09-15. htm
29. D. Milward Ontology-based interactive information extraction from scientific abstracts Comp. Funct. Genomics 6 2004 67 71
30. K. Eilbeck The sequence ontology: a tool for the unification of genome annotations Genome Biol 6 2005 R44