Real-time and automatic sorting of multi-neuronal activity for sub-millisecond interactions in vivo

Neuroscience

Volumn 134, Issue 1, 2005, Pages 301-315

  Takahashi, S ^a   Sakurai, Y ^a  

^a KYOTO UNIVERSITY   (Japan)

Author keywords

Dodecatrode; Independent component analysis; Spike sorting

Indexed keywords

ANIMAL EXPERIMENT; ARTICLE; CELL SELECTION; CONTROLLED STUDY; DENDRITE; ELECTRODE; ELECTROPHYSIOLOGY; GAP JUNCTION; INDEPENDENT COMPONENT ANALYSIS; INTERNEURON; NERVE CELL; NONHUMAN; PRIORITY JOURNAL; RAT;

ACTION POTENTIALS; ANIMALS; BRAIN; MICROELECTRODES; NEURONS; RATS; SIGNAL PROCESSING, COMPUTER-ASSISTED; TIME;

EID: 21744461136     PISSN: 03064522     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroscience.2005.03.031     Document Type: Article

References (50)

1. P. Bartho, H. Hirase, L. Monconduit, M. Zugaro, K. Harris, G. Buzsaki Characterization of neocortical principal cells and interneurons by network interactions and extracellular features J Neurophysiol 92 2004 600 608
2. G. Bi, M. Poo Synaptic modifications in cultured hippocampal neurons Dependence on spike timing, synaptic strength, and postsynaptic cell type J Neurosci 18 1998 10464 10472
3. G. Bi, M. Poo Synaptic modification by correlated activity Hebb's postulate revisited Annu Rev Neurosci 24 2001 139 166
4. G. Buzsaki, A. Kandel Somadendritic backpropagation of action potentials in cortical pyramidal cells of the awake rat J Neurophysiol 79 1998 1587 1591
5. G. Buzsaki, M. Penttonen, Z. Nadasdy, A. Bragin Pattern and inhibition-dependent invasion of pyramidal cell dendrites by fast spikes in the hippocampus in vivo Proc Natl Acad Sci U S A 93 1996 9921 9925
6. J. Chapin, K. Moxon, R. Markowitz, M. Nicolelis Real-time control of a robot arm using simultaneously recorded neurons in the motor cortex Nat Neurosci 2 1999 664 670
7. I. Cohen, R. Miles Contributions of intrinsic and synaptic activities to the generation of neuronal discharges in in vitro hippocampus J Physiol (Lond) 524 2000 485 502
8. P. Comon Independent component analysis, a new concept? Signal Proc 36 1994 287 314
9. J. Csicsvari, D. Henze, B. Jamieson, K. Harris, A. Sirota, P. Bartho, K. Wise, G. Buzsaki Massively parallel recording of unit and local field potentials with silicon-based electrodes J Neurophysiol 90 2003 1314 1323
10. J. Csicsvari, H. Hirase, A. Czurko, G. Buzsaki Reliability and state dependence of pyramidal cell-interneuron synapses in the hippocampus an ensemble approach in the behaving rat Neuron 21 1998 179 189
11. A.A. Emondi, S.P. Rebrik, A.V. Kurgansky, K.D. Miller Tracking neurons recorded from tetrodes across time J Neurosci Methods 135 2004 95 105
12. M. Fee, P. Mitra, D. Kleinfeld Automatic sorting of multiple unit neuronal signals in the presence of anisotropic and non-Gaussian variability J Neurosci Methods 69 1996 175 188
13. M. Fee, P. Mitra, D. Kleinfeld Variability of extracellular spike waveforms of cortical neurons J Neurophysiol 76 1996 3823 3833
14. T. Freund, G. Buzsaki Interneurons of the hippocampus Hippocampus 6 1996 347 470
15. M. Galarreta, S. Hestrin Electrical synapses between GABA-releasing interneurons Nat Rev Neurosci 2 2001 425 433
16. M. Galarreta, S. Hestrin Spike transmission and synchrony detection in networks of GABAergic interneurons Science 292 2001 2295 2299
17. M. Galarreta, S. Hestrin Electrical and chemical synapses among parvalbumin fast-spiking GABAergic interneurons in adult mouse neocortex Proc Natl Acad Sci U S A 99 2002 12438 12443
18. A. Georgopoulos, A. Schwartz, R. Kettner Neuronal population coding of movement direction Science 233 1986 1416 1419
19. J. Gibson, M. Beierlein, B. Connors Two networks of electrically coupled inhibitory neurons in neocortex Nature 402 1999 75 79
20. C. Gray, P. Maldonado, M. Wilson, B. McNaughton Tetrodes markedly improve the reliability and yield of multiple single-unit isolation from multi-unit recordings in cat striate cortex J Neurosci Methods 63 1995 43 54
21. K. Harris, J. Csicsvari, H. Hirase, G. Dragoi, G. Buzsaki Organization of cell assemblies in the hippocampus Nature 424 2003 552 556
22. K. Harris, D. Henze, J. Csicsvari, H. Hirase, G. Buzsaki Accuracy of tetrode spike separation as determined by simultaneous intracellular and extracellular measurements J Neurophysiol 84 2000 401 414
23. M. Hausser, N. Spruston, G. Stuart Diversity and dynamics of dendritic signaling Science 290 2000 739 744
24. D. Hebb The organization of behavior 1949 John Wiley and Sons New York
25. D. Henze, Z. Borhegyi, J. Csicsvari, A. Mamiya, K. Harris, G. Buzsaki Intracellular features predicted by extracellular recordings in the hippocampus in vivo J Neurophysiol 84 2000 390 400
26. Y. Huang, J.P. Miller Phased-array processing for spike discrimination J Neurophysiol 92 2004 1944 1957
27. A. Hyvarinen Fast and robust fixed-point algorithms for independent component analysis IEEE Trans Neural Netw 10 1999 626 634
28. A. Kamondi, L. Acsady, G. Buzsaki Dendritic spikes are enhanced by cooperative network activity in the intact hippocampus J Neurosci 18 1998 3919 3928
29. H. Kaneko, S. Suzuki, J. Okada, M. Akamatsu Multineuronal spike classification based on multisite electrode recording, whole-waveform analysis, and hierarchical clustering IEEE Trans Biomed Eng 46 1999 280 290
30. M. Lewicki Bayesian modeling and classification of neural signals Neural Comput 6 1994 1005 1030
31. M. Lewicki A review of methods for spike sorting the detection and classification of neural action potentials Network 9 1998 R53 R78
32. B. Macvicar, F. Dudek Electrotonic coupling between pyramidal cells a direct demonstration in rat hippocampal slices Science 213 1981 782 785
33. M. Martina, I. Vida, P. Jonas Distal initiation and active propagation of action potentials in interneuron dendrites Science 287 2000 295 300
34. M. Nicolelis Actions from thoughts Nature 409 2001 403 407
35. M. Nicolelis Brain-machine interfaces to restore motor function and probe neural circuits Nat Rev Neurosci 4 2003 417 422
36. D. Perkel, G. Gerstein, G. Moore Neuronal spike trains and stochastic point processes. 2) Simultaneous spike trains Biophys J 7 1967 419 440
37. M. Recce, J. O'Keefe The tetrode a new technique for multi-unit extracellular recording Proc Soc Neurosci Abstr 15 1989 1250
38. Y. Sakurai Involvement of auditory cortical and hippocampal-neurons in auditory working-memory and reference memory in the rat J Neurosci 14 1994 2606 2623
39. Y. Sakurai Hippocampal and neocortical cell assemblies encode memory processes for different types of stimuli in the rat J Neurosci 16 1996 2809 2819
40. Y. Sakurai How do cell assemblies encode information in the brain? Neurosci Biobehav Rev 23 1999 785 796
41. Y. Sakurai Coding of auditory temporal and pitch information by hippocampal individual cells and cell assemblies in the rat Neuroscience 115 2002 1153 1163
42. Y. Sakurai, S. Takahashi, M. Inoue Stimulus duration in working memory is represented by neuronal activity in the monkey prefrontal cortex Eur J Neurosci 20 2004 1069 1080
43. G. Stuart, N. Spruston, M. Hausser Dendrites 1999 Oxford University Press New York
44. G. Stuart, N. Spruston, B. Sakmann, M. Hausser Action potential initiation and backpropagation in neurons of the mammalian CNS Trends Neurosci 20 1997 125 131
45. S. Takahashi, Y. Anzai, Y. Sakurai Automatic sorting for multi-neuronal activity recorded with tetrodes in the presence of overlapping spikes J Neurophysiol 89 2003 2245 2258
46. S. Takahashi, Y. Anzai, Y. Sakurai A new approach to spike sorting for multi-neuronal activities recorded with a tetrode how ICA can be practical Neurosci Res 46 2003 265 272
47. S. Takahashi, Y. Sakurai, M. Tsukada, Y. Anzai Classification of neuronal activities from tetrode recordings using independent component analysis Neurocomputing 49 2002 289 298
48. M. Tsodyks, H. Markram The neural code between neocortical pyramidal neurons depends on neurotransmitter release probability Proc Natl Acad Sci U S A 94 1997 719 723
49. J. Wessberg, C. Stambaugh, J. Kralik, P. Beck, M. Laubach, J. Chapin, J. Kim, J. Biggs, M. Srinivasan, M. Nicolelis Real-time prediction of hand trajectory by ensembles of cortical neurons in primates Nature 408 2000 361 365
50. M. Wilson, B. McNaughton Dynamics of the hippocampal ensemble code for space Science 261 1993 1055 1058