-
1
-
-
0024562664
-
Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102
-
Kimbara, K., Hashimoto, T., Fukuda, M., Koana, T., Takagi, M., Oishi, M. and Yano, K. (1989) Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102. J. Bacteriol. 171, 2740-2747
-
(1989)
J. Bacteriol.
, vol.171
, pp. 2740-2747
-
-
Kimbara, K.1
Hashimoto, T.2
Fukuda, M.3
Koana, T.4
Takagi, M.5
Oishi, M.6
Yano, K.7
-
2
-
-
0026743341
-
The electron-transport proteins of hydroxylating bacterial dioxygenases
-
Mason, J. R. and Cammack, R. (1992) The electron-transport proteins of hydroxylating bacterial dioxygenases. Annu. Rev. Microbiol. 46, 277-305
-
(1992)
Annu. Rev. Microbiol.
, vol.46
, pp. 277-305
-
-
Mason, J.R.1
Cammack, R.2
-
3
-
-
0028348664
-
Identification of the bphA4 gene encoding ferredoxin reductase involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102
-
Kikuchi, Y., Nagata, Y., Hinata, M., Kimbara, K., Fukuda, M., Yano, K. and Takagi, M. (1994) Identification of the bphA4 gene encoding ferredoxin reductase involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102. J. Bacteriol. 176, 1689-1694
-
(1994)
J. Bacteriol.
, vol.176
, pp. 1689-1694
-
-
Kikuchi, Y.1
Nagata, Y.2
Hinata, M.3
Kimbara, K.4
Fukuda, M.5
Yano, K.6
Takagi, M.7
-
4
-
-
0028241452
-
Nucleotide sequence and functional analysis of the meta-cleavage pathway involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102
-
Kikuchi, Y., Yasukochi, Y., Nagata, Y., Fukuda, M. and Takagi, M. (1994) Nucleotide sequence and functional analysis of the meta-cleavage pathway involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102. J. Bacteriol. 176, 4269-4276
-
(1994)
J. Bacteriol.
, vol.176
, pp. 4269-4276
-
-
Kikuchi, Y.1
Yasukochi, Y.2
Nagata, Y.3
Fukuda, M.4
Takagi, M.5
-
5
-
-
0028124512
-
Identification of the bphA and bphB genes of Pseudomonas sp. strains KKS102 involved in degradation of biphenyl and polychlorinated biphenyls
-
Fukuda, M., Yasukochi, Y., Kikuchi, Y., Nagata, Y., Kimbara, K., Horiuchi, H., Takagi, M. and Yano, K. (1994) Identification of the bphA and bphB genes of Pseudomonas sp. strains KKS102 involved in degradation of biphenyl and polychlorinated biphenyls. Biochem. Biophys. Res. Commun. 202, 850-856
-
(1994)
Biochem. Biophys. Res. Commun.
, vol.202
, pp. 850-856
-
-
Fukuda, M.1
Yasukochi, Y.2
Kikuchi, Y.3
Nagata, Y.4
Kimbara, K.5
Horiuchi, H.6
Takagi, M.7
Yano, K.8
-
6
-
-
0002464602
-
Purification and crystallization of ferredoxin reductase component of a biphenyl dioxygenase derived from Pseudomonas sp. strain KKS102
-
Yamada, T., Sakurai, N., Nishizaki, T., Senda, T., Masai, E., Fukuda, M. and Mitsui, Y. (2000) Purification and crystallization of ferredoxin reductase component of a biphenyl dioxygenase derived from Pseudomonas sp. strain KKS102. Protein Pept. Lett. 7, 277-280
-
(2000)
Protein Pept. Lett.
, vol.7
, pp. 277-280
-
-
Yamada, T.1
Sakurai, N.2
Nishizaki, T.3
Senda, T.4
Masai, E.5
Fukuda, M.6
Mitsui, Y.7
-
7
-
-
0034387880
-
Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase
-
Senda, T., Yamada, T., Sakurai, N., Kubota, M., Nishizaki, T., Masai, E., Fukuda, M. and Mitsui, Y. (2000) Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase. J. Mol. Biol. 304, 397-410
-
(2000)
J. Mol. Biol.
, vol.304
, pp. 397-410
-
-
Senda, T.1
Yamada, T.2
Sakurai, N.3
Kubota, M.4
Nishizaki, T.5
Masai, E.6
Fukuda, M.7
Mitsui, Y.8
-
8
-
-
0030868605
-
Iron-sulfur clusters: Nature's modular, multipurpose structures
-
Beinert, H., Holm, R. H. and Munck, E. (1997) Iron-sulfur clusters: nature's modular, multipurpose structures. Science 277, 653-659
-
(1997)
Science
, vol.277
, pp. 653-659
-
-
Beinert, H.1
Holm, R.H.2
Munck, E.3
-
9
-
-
0021759095
-
Purification and characterization of the Rieske iron-sulfur protein from Thermus thermophilus: Evidence for a [2Fe-2S] cluster having non-cysteine ligands
-
Fee, J. A., Findling, K. L., Yoshida, T., Hille, R., Tarr, G. E., Hearshen, D. O., Dunham, W. R., Day, E. P., Kent, T. A. and Munck, E. (1984) Purification and characterization of the Rieske iron-sulfur protein from Thermus thermophilus: evidence for a [2Fe-2S] cluster having non-cysteine ligands. J. Biol. Chem. 259, 124-133
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 124-133
-
-
Fee, J.A.1
Findling, K.L.2
Yoshida, T.3
Hille, R.4
Tarr, G.E.5
Hearshen, D.O.6
Dunham, W.R.7
Day, E.P.8
Kent, T.A.9
Munck, E.10
-
10
-
-
0021959501
-
Purification and characterization of the Rieske iron-sulfur protein from Thermus thermophilus
-
Cline, J. F., Hoffman, B. M., Mims, W. B., LaHaie, E., Ballou, D. P. and Fee, J. A. (1985) Purification and characterization of the Rieske iron-sulfur protein from Thermus thermophilus. J. Biol. Chem. 260, 3251-3254
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 3251-3254
-
-
Cline, J.F.1
Hoffman, B.M.2
Mims, W.B.3
LaHaie, E.4
Ballou, D.P.5
Fee, J.A.6
-
11
-
-
0024362072
-
15N-enriched phthalate dioxygenase from Pseudomonas cepacia proves that two histidines are coordinated to the [2Fe-2S] Rieske-type clusters
-
15N-enriched phthalate dioxygenase from Pseudomonas cepacia proves that two histidines are coordinated to the [2Fe-2S] Rieske-type clusters. Biochemistry 28, 4861-4871
-
(1989)
Biochemistry
, vol.28
, pp. 4861-4871
-
-
Gurbiel, R.J.1
Batie, C.J.2
Sivaraja, M.3
True, A.E.4
Fee, J.A.5
Hoffman, B.M.6
Ballou, D.P.7
-
12
-
-
0029584867
-
Coordination of the Rieske-type [2Fe-2S] cluster of the terminal iron-sulfur protein of Pseudomonas putida benzene 1,2-dioxygenase, studied by one- and two-dimensional electron spin-echo envelope modulation spectroscopy
-
Shergill, J. K., Joannou, C. L., Mason, J. R. and Cammack, R. (1995) Coordination of the Rieske-type [2Fe-2S] cluster of the terminal iron-sulfur protein of Pseudomonas putida benzene 1,2-dioxygenase, studied by one- and two-dimensional electron spin-echo envelope modulation spectroscopy. Biochemistry 34, 16533-16542
-
(1995)
Biochemistry
, vol.34
, pp. 16533-16542
-
-
Shergill, J.K.1
Joannou, C.L.2
Mason, J.R.3
Cammack, R.4
-
13
-
-
0035830420
-
Characterization of BphF, a Rieske-type ferredoxin with a low reduction potential
-
Couture, M. M.-J., Colbert, C. L., Babini, E., Rosell, F. I., Mauk, A. G., Bolin, J. T. and Eltis, L. D. (2001) Characterization of BphF, a Rieske-type ferredoxin with a low reduction potential. Biochemistry 40, 84-92
-
(2001)
Biochemistry
, vol.40
, pp. 84-92
-
-
Couture, M.M.-J.1
Colbert, C.L.2
Babini, E.3
Rosell, F.I.4
Mauk, A.G.5
Bolin, J.T.6
Eltis, L.D.7
-
14
-
-
0032502711
-
Alteration of the midpoint potential and catalytic activity of the Rieske iron-sulfur protein by changes of amino acids forming hydrogen bonds to the iron-sulfur cluster
-
Denke, E., Merbitz-Zahradnik, T., Hatzteld, O. M., Snyder, C. H., Link, T. A. and Trumpower, B. L. (1998) Alteration of the midpoint potential and catalytic activity of the Rieske iron-sulfur protein by changes of amino acids forming hydrogen bonds to the iron-sulfur cluster. J. Biol. Chem. 273, 9085-9093
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 9085-9093
-
-
Denke, E.1
Merbitz-Zahradnik, T.2
Hatzteld, O.M.3
Snyder, C.H.4
Link, T.A.5
Trumpower, B.L.6
-
15
-
-
0032127537
-
1 complex in Paracoccus denitrificans
-
1 complex in Paracoccus denitrificans. Eur. J. Biochem. 255, 100-106
-
(1998)
Eur. J. Biochem.
, vol.255
, pp. 100-106
-
-
Schroter, T.1
Hatzfeld, O.M.2
Gemeinhardt, S.3
Korn, M.4
Friedrich, T.5
Ludwig, B.6
Link, T.A.7
-
17
-
-
1842477484
-
Engineering a three-cysteine, one-histidine ligand environment into a new hyperthermophilic archaeal Rieske-type [2Fe-2S] ferredoxin from Sulfolobus solfataricus
-
Kounosu, A., Li, Z., Cosper, N. J., Sokes, J. E., Scott, R. A., Iai, T., Urushiyama, A. and Iwasaki, T. (2004) Engineering a three-cysteine, one-histidine ligand environment into a new hyperthermophilic archaeal Rieske-type [2Fe-2S] ferredoxin from Sulfolobus solfataricus. J. Biol. Chem. 279, 12519-12528
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 12519-12528
-
-
Kounosu, A.1
Li, Z.2
Cosper, N.J.3
Sokes, J.E.4
Scott, R.A.5
Iai, T.6
Urushiyama, A.7
Iwasaki, T.8
-
18
-
-
0035830420
-
Characterization of BphF, a Rieske-type ferredoxin with a low reduction potential
-
Couture, M. M.-J., Colbert, C. L., Babin, E., Rosell, F. I., Mauk, A. G., Bolin, J. T. and Eltis, L. D. (2001) Characterization of BphF, a Rieske-type ferredoxin with a low reduction potential. Biochemistry 40, 84-92
-
(2001)
Biochemistry
, vol.40
, pp. 84-92
-
-
Couture, M.M.-J.1
Colbert, C.L.2
Babin, E.3
Rosell, F.I.4
Mauk, A.G.5
Bolin, J.T.6
Eltis, L.D.7
-
19
-
-
0034480510
-
A cluster exposed: Structure of the Rieske ferredoxin from biphenyl dioxygenase and the redox properties of Rieske Fe-S proteins
-
Colbert, C. L., Couture, M. M.-J., Eltis, L. D. and Bolin, J. T. (2000) A cluster exposed: structure of the Rieske ferredoxin from biphenyl dioxygenase and the redox properties of Rieske Fe-S proteins. Structure 8, 1267-1278
-
(2000)
Structure
, vol.8
, pp. 1267-1278
-
-
Colbert, C.L.1
Couture, M.M.-J.2
Eltis, L.D.3
Bolin, J.T.4
-
20
-
-
0026023551
-
Signal transduction in bacteria: CheW forms a reversible complex with the protein kinase CheA
-
Gegner, J. A. and Dahlquist, F. W. (1991) Signal transduction in bacteria: CheW forms a reversible complex with the protein kinase CheA. Proc. Natl. Acad. Sci. U.S.A. 88, 750-754
-
(1991)
Proc. Natl. Acad. Sci. U.S.A.
, vol.88
, pp. 750-754
-
-
Gegner, J.A.1
Dahlquist, F.W.2
-
21
-
-
0023472472
-
Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa
-
Schägger, H. and von Jagow, G. (1987) Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal. Biochem. 166, 368-379
-
(1987)
Anal. Biochem.
, vol.166
, pp. 368-379
-
-
Schägger, H.1
Von Jagow, G.2
-
22
-
-
85012295283
-
XAFS and protein crystallography Beamline BL38B1 at SPring-8
-
Tanida, H., Kikuchi, A., Miura, K., Takeshita, K., Goto, S., Shiro, Y. and Ishikawa, T. (2004) XAFS and protein crystallography Beamline BL38B1 at SPring-8. SRI2003 proceedings, AIP Conference Proceedings 705, 486-489
-
(2004)
SRI2003 Proceedings, AIP Conference Proceedings
, vol.705
, pp. 486-489
-
-
Tanida, H.1
Kikuchi, A.2
Miura, K.3
Takeshita, K.4
Goto, S.5
Shiro, Y.6
Ishikawa, T.7
-
23
-
-
0542395209
-
Real-space multiple-scattering calculation and interpretation of X-ray-absorption near-edge structure
-
Ankudinov, A. L., Ravel, B., Rehr, J. J. and Conradson, S. D. (1998) Real-space multiple-scattering calculation and interpretation of X-ray-absorption near-edge structure Phys. Rev. B Condens. Matter Mater. Phys. 58, 7565-7576
-
(1998)
Phys. Rev. B Condens. Matter Mater. Phys.
, vol.58
, pp. 7565-7576
-
-
Ankudinov, A.L.1
Ravel, B.2
Rehr, J.J.3
Conradson, S.D.4
-
24
-
-
0014197664
-
Component of the electron transport system in adrenal steroid hydroxylase: Isolation and properties of non-heme iron protein (adorenodoxin)
-
Kimura, T. and Suzuki, K. (1967) Component of the electron transport system in adrenal steroid hydroxylase: isolation and properties of non-heme iron protein (adorenodoxin). J. Biol. Chem. 242, 485-491
-
(1967)
J. Biol. Chem.
, vol.242
, pp. 485-491
-
-
Kimura, T.1
Suzuki, K.2
-
26
-
-
0029997109
-
1 complex and in bacterial dioxygenases by circular dichroism spectroscopy and cyclic voltammetry
-
Link, T. A., Hatzfeld, O. M., Unalkat, P., Shergill, J. K., Cammack, R. and Mason, J. R. (1996) Comparison of the "Rieske" [2Fe-2S] center in the ftc, complex and in bacterial dioxygenases by circular dichroism spectroscopy and cyclic voltammetry. Biochemistry 35, 7546-7552
-
(1996)
Biochemistry
, vol.35
, pp. 7546-7552
-
-
Link, T.A.1
Hatzfeld, O.M.2
Unalkat, P.3
Shergill, J.K.4
Cammack, R.5
Mason, J.R.6
-
27
-
-
0014098863
-
Spectroscopic studies on spinach ferredoxin and adrenodoxin
-
Palmer, G., Brintzinger, H. and Estabrook, R. W. (1967) Spectroscopic studies on spinach ferredoxin and adrenodoxin. Biochemistry 6, 1658-1664
-
(1967)
Biochemistry
, vol.6
, pp. 1658-1664
-
-
Palmer, G.1
Brintzinger, H.2
Estabrook, R.W.3
-
28
-
-
0028177774
-
1H NMR spectroscopy of serine-ligated [2Fe-2S] ferredoxins produced by site-directed mutagenesis of cysteine residues in recombinant Anabaena 7120 vegetative ferredoxin
-
1H NMR spectroscopy of serine-ligated [2Fe-2S] ferredoxins produced by site-directed mutagenesis of cysteine residues in recombinant Anabaena 7120 vegetative ferredoxin. Biochemistry 33, 3155-3164
-
(1994)
Biochemistry
, vol.33
, pp. 3155-3164
-
-
Cheng, H.1
Xia, B.2
Reed, G.H.3
Markley, J.L.4
-
29
-
-
0000788131
-
X-ray absorption spectroscopy of iron-tyrosinate proteins
-
Roe, A. L., Schneider, D. J., Mayer, R. J., Pyrz, J. W., Widom, J. and Que, Jr, L. (1984) X-ray absorption spectroscopy of iron-tyrosinate proteins. J. Am. Chem. Soc. 106, 1676-1681
-
(1984)
J. Am. Chem. Soc.
, vol.106
, pp. 1676-1681
-
-
Roe, A.L.1
Schneider, D.J.2
Mayer, R.J.3
Pyrz, J.W.4
Widom, J.5
Que Jr., L.6
-
30
-
-
0039246584
-
X-ray spectroscopic studies of nickel complexes, with application to the structure of nickel sites in hydrogenases
-
Colpas, G. J., Maroney, M. J., Bagyinka, C., Kumar, M., Willis, W. S., Suib, S. L., Mascharak, P. K. and Baidya, N. (1991) X-ray spectroscopic studies of nickel complexes, with application to the structure of nickel sites in hydrogenases. Inorg. Chem. 30, 920-928
-
(1991)
Inorg. Chem.
, vol.30
, pp. 920-928
-
-
Colpas, G.J.1
Maroney, M.J.2
Bagyinka, C.3
Kumar, M.4
Willis, W.S.5
Suib, S.L.6
Mascharak, P.K.7
Baidya, N.8
-
32
-
-
0142121656
-
High-level expression of porcine liver cytochrome P-450 reductase catalytic domain in Escherichia coli by modulating the predicted local secondary structure of mRNA
-
Kimura, S. and Iyanagi, T. (2003) High-level expression of porcine liver cytochrome P-450 reductase catalytic domain in Escherichia coli by modulating the predicted local secondary structure of mRNA. J. Biochem. (Tokyo) 134, 403-413
-
(2003)
J. Biochem. (Tokyo)
, vol.134
, pp. 403-413
-
-
Kimura, S.1
Iyanagi, T.2
-
33
-
-
0022336784
-
Processing enzyme ribonuclease E specifically cleaves RNA I: An inhibitor of primer formation in plasmid DNA synthesis
-
Tomcsányi, T. and Apirion, D. (1985) Processing enzyme ribonuclease E specifically cleaves RNA I: an inhibitor of primer formation in plasmid DNA synthesis. J. Mol. Biol. 185, 713-720
-
(1985)
J. Mol. Biol.
, vol.185
, pp. 713-720
-
-
Tomcsányi, T.1
Apirion, D.2
-
34
-
-
0032588984
-
Decay of rp/N and lacZ mRNA in Escherichia coli
-
Liang, S.-T., Ehrenberg, M., Dennis, P. and Bremer, H. (1999) Decay of rp/N and lacZ mRNA in Escherichia coli. J. Mol. Biol. 288, 521-538
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 521-538
-
-
Liang, S.-T.1
Ehrenberg, M.2
Dennis, P.3
Bremer, H.4
-
35
-
-
0000648165
-
GeneBee-NET: Internet-based server for analyzing biopolymers structure
-
Brodsky, L. I., Ivanov, V. V., Kalaydzidis Ya, L., Leontovich, A. M., Nikolaev, V. K., Feranchuk, S. I. and Drachev, V. A. (1995) GeneBee-NET: Internet-based server for analyzing biopolymers structure. Biochemistry (Moscow) 60, 923-928
-
(1995)
Biochemistry (Moscow)
, vol.60
, pp. 923-928
-
-
Brodsky, L.I.1
Ivanov, V.V.2
Kalaydzidis Ya, L.3
Leontovich, A.M.4
Nikolaev, V.K.5
Feranchuk, S.I.6
Drachev, V.A.7
-
37
-
-
21744452725
-
Oxidation-reduction reaction
-
John Wiley & Sons, Hoboken
-
Voet, D. and Voet, J. G. (2004) Oxidation-reduction reaction. In Biochemistry (Third edition), pp. 571-574, John Wiley & Sons, Hoboken
-
(2004)
Biochemistry (Third Edition)
, pp. 571-574
-
-
Voet, D.1
Voet, J.G.2
-
38
-
-
0036891683
-
Redox-dependent structural changes in archaeal and bacterial Rieske-type [2Fe-2S] clusters
-
Cosper, N. J., Eby, D. M., Kounosu, A., Kurosawa, N., Neidle, E. L., Kurtz, Jr, D. M., Iwaski, T. and Scott, R. A. (2002) Redox-dependent structural changes in archaeal and bacterial Rieske-type [2Fe-2S] clusters. Protein Sci. 11, 2969-2973
-
(2002)
Protein Sci.
, vol.11
, pp. 2969-2973
-
-
Cosper, N.J.1
Eby, D.M.2
Kounosu, A.3
Kurosawa, N.4
Neidle, E.L.5
Kurtz Jr., D.M.6
Iwaski, T.7
Scott, R.A.8
-
39
-
-
0032539991
-
Evidence for oxidation-state-dependent conformational changes in human ferredoxin from multinuclear multidimensional NMR spectroscopy
-
Xia, B., Volkman, B. F. and Markley, J. L. (1998) Evidence for oxidation-state-dependent conformational changes in human ferredoxin from multinuclear multidimensional NMR spectroscopy. Biochemistry 37, 3965-3973
-
(1998)
Biochemistry
, vol.37
, pp. 3965-3973
-
-
Xia, B.1
Volkman, B.F.2
Markley, J.L.3
-
40
-
-
0033619724
-
Refined X-ray structures of the oxidized, at 1.3 Å, and reduced, at 1.17 Å, [2Fe-2S] ferredoxin from the cyanobacterium Anabaena PCC119 show redox-linked conformational changes
-
Morales, R., Charon, M.-H., Hudry-Clergeon, G., Peillot, Y., Norager, S., Medina, M. and Frey, M. (1999) Refined X-ray structures of the oxidized, at 1.3 Å, and reduced, at 1.17 Å, [2Fe-2S] ferredoxin from the cyanobacterium Anabaena PCC119 show redox-linked conformational changes. Biochemistry 38, 15764-15773
-
(1999)
Biochemistry
, vol.38
, pp. 15764-15773
-
-
Morales, R.1
Charon, M.-H.2
Hudry-Clergeon, G.3
Peillot, Y.4
Norager, S.5
Medina, M.6
Frey, M.7
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