메뉴 건너뛰기




Volumn 44, Issue 25, 2005, Pages 9160-9167

Controlled reduction of the humidity induces a shortcut recovery reaction in the photocycle of photoactive yellow protein

Author keywords

[No Author keywords available]

Indexed keywords

ABSORPTION; ATMOSPHERIC HUMIDITY; PHOTOCHEMICAL REACTIONS; REACTION KINETICS; SALTS; SPECTROSCOPIC ANALYSIS; THIN FILMS;

EID: 21744447700     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi050237d     Document Type: Article
Times cited : (15)

References (41)
  • 1
    • 0022430790 scopus 로고
    • Isolation and characterization of soluble cytochromes, ferredoxins and other chromophoric proteins from the halophilic phototrophic bacterium Ectothiorhodospira halophila
    • Meyer, T. E. (1985) Isolation and characterization of soluble cytochromes, ferredoxins and other chromophoric proteins from the halophilic phototrophic bacterium Ectothiorhodospira halophila, Biochim. Biophys. Acta 806, 175-183.
    • (1985) Biochim. Biophys. Acta , vol.806 , pp. 175-183
    • Meyer, T.E.1
  • 2
    • 0023152468 scopus 로고
    • Properties of a water-soluble, yellow protein isolated from a halophilic phototrophic bacterium that has photochemical activity analogous to sensory rhodopsin
    • Meyer, T. E., Yakali, E., Cusanovich, M. A., and Tollin, G. (1987) Properties of a water-soluble, yellow protein isolated from a halophilic phototrophic bacterium that has photochemical activity analogous to sensory rhodopsin, Biochemistry 26, 418-423.
    • (1987) Biochemistry , vol.26 , pp. 418-423
    • Meyer, T.E.1    Yakali, E.2    Cusanovich, M.A.3    Tollin, G.4
  • 3
    • 0037468225 scopus 로고    scopus 로고
    • Photoactive Yellow Protein, a new type of photoreceptor protein: Will this "yellow lab" bring us where we want to go?
    • Hellingwerf, K., Hendriks, J., and Gensch, T. (2003) Photoactive Yellow Protein, a new type of photoreceptor protein: will this "yellow lab" bring us where we want to go?, J. Phys. Chem. A 107, 1082-1094.
    • (2003) J. Phys. Chem. A , vol.107 , pp. 1082-1094
    • Hellingwerf, K.1    Hendriks, J.2    Gensch, T.3
  • 4
    • 0037657894 scopus 로고    scopus 로고
    • Photoactive Yellow Protein: A prototypic PAS domain sensory protein and development of a common signaling mechanism
    • Cusanovich, M. A., and Meyer, T. E. (2003) Photoactive Yellow Protein: a prototypic PAS domain sensory protein and development of a common signaling mechanism, Biochemistry 42, 4759-4770.
    • (2003) Biochemistry , vol.42 , pp. 4759-4770
    • Cusanovich, M.A.1    Meyer, T.E.2
  • 5
    • 0027271859 scopus 로고
    • Primary structure of a photoactive yellow protein from the phototrophic bacterium Ectothiorhodospira halophila, with evidence for the mass and the binding site of the criromophore
    • Van Beeumen, J. J., Devreese, B. V., Van Bun, S. M., Hoff, W. D., Hellingwerf, K. J., Meyer, T. E., McRee, D. E., and Cusanovich, M. A. (1993) Primary structure of a photoactive yellow protein from the phototrophic bacterium Ectothiorhodospira halophila, with evidence for the mass and the binding site of the criromophore, Protein Sci. 2, 1114-1125.
    • (1993) Protein Sci. , vol.2 , pp. 1114-1125
    • Van Beeumen, J.J.1    Devreese, B.V.2    Van Bun, S.M.3    Hoff, W.D.4    Hellingwerf, K.J.5    Meyer, T.E.6    McRee, D.E.7    Cusanovich, M.A.8
  • 8
    • 0038558401 scopus 로고    scopus 로고
    • Comparison of the photochemical reaction of photoactive yellow protein in crystal with reaction in solution
    • Mano, E., Kamikubo, H., Imamoto, Y., and Kataoka, M. (2003) Comparison of the photochemical reaction of photoactive yellow protein in crystal with reaction in solution, Spectrosc.: Int. J. 17, 345-353.
    • (2003) Spectrosc.: Int. J. , vol.17 , pp. 345-353
    • Mano, E.1    Kamikubo, H.2    Imamoto, Y.3    Kataoka, M.4
  • 10
    • 84989696264 scopus 로고
    • Low-temperature absorbency and fluorescence spectroscopy of the photoactive yellow protein from Ectothiorhodospira halophila
    • Hoff, W. D., Kwa, S. L. S., Van Grondelle, R., and Hellingwerf, K. J. (1992) Low-temperature absorbency and fluorescence spectroscopy of the photoactive yellow protein from Ectothiorhodospira halophila, Photochem. Photobiol. 56, 529-539.
    • (1992) Photochem. Photobiol. , vol.56 , pp. 529-539
    • Hoff, W.D.1    Kwa, S.L.S.2    Van Grondelle, R.3    Hellingwerf, K.J.4
  • 11
    • 0029803844 scopus 로고    scopus 로고
    • Photoreaction cycle of photoactive yellow protein from Ectothiorhodospira halophila studied by low-temperature spectroscopy
    • Imamoto, Y., Kataoka, M., and Tokunaga, F. (1996) Photoreaction cycle of photoactive yellow protein from Ectothiorhodospira halophila studied by low-temperature spectroscopy, Biochemistry 35, 14047-14053.
    • (1996) Biochemistry , vol.35 , pp. 14047-14053
    • Imamoto, Y.1    Kataoka, M.2    Tokunaga, F.3
  • 13
    • 0032510475 scopus 로고    scopus 로고
    • Structure at 0.85 Å resolution of an early protein photocycle intermediate
    • Genick, U. K., Soltis, S. M., Kuhn, P., Canestrelli, I. L., and Getzoff, E. D. (1998) Structure at 0.85 Å resolution of an early protein photocycle intermediate, Nature 392, 206-209.
    • (1998) Nature , vol.392 , pp. 206-209
    • Genick, U.K.1    Soltis, S.M.2    Kuhn, P.3    Canestrelli, I.L.4    Getzoff, E.D.5
  • 15
    • 0035923399 scopus 로고    scopus 로고
    • A molecular movie at 1.8 Å resolution displays the photocycle of photoactive yellow protein, a eubacterial blue-light receptor, from nanoseconds to seconds
    • Ren, Z., Perman, B., Srajer, V., Teng, T. Y., Pradervand, C., Bourgeois, D., Schotte, F., Ursby, T., Kort, R., Wulff, M., and Moffat, K. (2001) A molecular movie at 1.8 Å resolution displays the photocycle of photoactive yellow protein, a eubacterial blue-light receptor, from nanoseconds to seconds, Biochemistry 40, 13788-13801.
    • (2001) Biochemistry , vol.40 , pp. 13788-13801
    • Ren, Z.1    Perman, B.2    Srajer, V.3    Teng, T.Y.4    Pradervand, C.5    Bourgeois, D.6    Schotte, F.7    Ursby, T.8    Kort, R.9    Wulff, M.10    Moffat, K.11
  • 16
    • 0029950952 scopus 로고    scopus 로고
    • Protein folding thermodynamics applied to the photocycle of the photoactive yellow protein
    • Van Brederode, M. E., Hoff, W. D., Van Stokkum, I. H. M., Groot, M. L., and Hellingwerf, K. J. (1996) Protein folding thermodynamics applied to the photocycle of the photoactive yellow protein, Biophys. J. 71, 365-380.
    • (1996) Biophys. J. , vol.71 , pp. 365-380
    • Van Brederode, M.E.1    Hoff, W.D.2    Van Stokkum, I.H.M.3    Groot, M.L.4    Hellingwerf, K.J.5
  • 18
    • 0035852878 scopus 로고    scopus 로고
    • Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation
    • Xie, A., Kelemen, L., Hendriks, J., White, B. J., Hellingwerf, K. J., and Hoff, W. D. (2001) Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation, Biochemistry 40, 1510-1517.
    • (2001) Biochemistry , vol.40 , pp. 1510-1517
    • Xie, A.1    Kelemen, L.2    Hendriks, J.3    White, B.J.4    Hellingwerf, K.J.5    Hoff, W.D.6
  • 19
    • 0344990168 scopus 로고    scopus 로고
    • Dynamics of protein and chromophore structural changes in the photocycle of photoactive yellow protein monitored by time-resolved optical rotatory dispersion
    • Chen, E., Gensch, T., Gross, A. B., Hendriks, J., Hellingwerf, K. J., and Kliger, D. S. (2003) Dynamics of protein and chromophore structural changes in the photocycle of photoactive yellow protein monitored by time-resolved optical rotatory dispersion, Biochemistry 42, 2062-2071.
    • (2003) Biochemistry , vol.42 , pp. 2062-2071
    • Chen, E.1    Gensch, T.2    Gross, A.B.3    Hendriks, J.4    Hellingwerf, K.J.5    Kliger, D.S.6
  • 20
    • 0037342350 scopus 로고    scopus 로고
    • Application of singular value decomposition to the analysis of time-resolved macromolecular X-ray data
    • Schmidt, M., Rajagopal, S., Ren, Z., and Moffat, K. (2003) Application of singular value decomposition to the analysis of time-resolved macromolecular X-ray data, Biophys. J. 84, 2112-2129.
    • (2003) Biophys. J. , vol.84 , pp. 2112-2129
    • Schmidt, M.1    Rajagopal, S.2    Ren, Z.3    Moffat, K.4
  • 21
    • 0036967107 scopus 로고    scopus 로고
    • The frontiers of time-resolved macromolecular crystallography: Movies and chirped X-ray pulses
    • discussion 79-88
    • Moffat, K. (2003) The frontiers of time-resolved macromolecular crystallography: movies and chirped X-ray pulses, Faraday Discuss. 122, 65-77; discussion 79-88.
    • (2003) Faraday Discuss. , vol.122 , pp. 65-77
    • Moffat, K.1
  • 22
    • 11844255732 scopus 로고    scopus 로고
    • Resolving protein structure dynamically
    • Yeremenko S., Hellingwerf K. J. (2005) Resolving protein structure dynamically, Structure 13, 4-6.
    • (2005) Structure , vol.13 , pp. 4-6
    • Yeremenko, S.1    Hellingwerf, K.J.2
  • 23
    • 0030446427 scopus 로고    scopus 로고
    • GIu46 donates a proton to the 4-hydroxycinnamate anion chromophore during the photocycle of photoactive yellow protein
    • Xie, A., Hoff, W. D., Kroon, A. R., and Hellingwerf, K. J. (1996) GIu46 donates a proton to the 4-hydroxycinnamate anion chromophore during the photocycle of photoactive yellow protein, Biochemistry 35, 14671-14678.
    • (1996) Biochemistry , vol.35 , pp. 14671-14678
    • Xie, A.1    Hoff, W.D.2    Kroon, A.R.3    Hellingwerf, K.J.4
  • 24
    • 0034745934 scopus 로고    scopus 로고
    • Structure of the II early intermediate of photoactive yellow protein by FTIR spectroscopy
    • Brudler, R., Rammelsberg, R., Woo, T. T., Getzoff, E. D., and Gerwert, K. (2001) Structure of the II early intermediate of photoactive yellow protein by FTIR spectroscopy, Nat. Struct. Biol. 8, 265-270.
    • (2001) Nat. Struct. Biol. , vol.8 , pp. 265-270
    • Brudler, R.1    Rammelsberg, R.2    Woo, T.T.3    Getzoff, E.D.4    Gerwert, K.5
  • 25
    • 0034734238 scopus 로고    scopus 로고
    • Water and bacteriorhodopsin: Structure, dynamics, and function
    • Dencher, N. A., Sass, H. J., and Büldt, G. (2000) Water and bacteriorhodopsin: structure, dynamics, and function, Biochim. Biophys. Act. 1460, 192-203.
    • (2000) Biochim. Biophys. Act. , vol.1460 , pp. 192-203
    • Dencher, N.A.1    Sass, H.J.2    Büldt, G.3
  • 26
    • 0017749540 scopus 로고
    • Hydration effects on the photocycle of bacteriorhodopsin in thin layers of purple membrane
    • Korenstein, R., and Hess, B. (1977) Hydration effects on the photocycle of bacteriorhodopsin in thin layers of purple membrane, Nature 270, 184-186.
    • (1977) Nature , vol.270 , pp. 184-186
    • Korenstein, R.1    Hess, B.2
  • 27
    • 0026030204 scopus 로고
    • Distortions in the photocycle of bacteriorhodopsin at moderate dehydration
    • Varo, G., and Lanyi, J. K. (1991) Distortions in the photocycle of bacteriorhodopsin at moderate dehydration, Biophys. J. 59, 313-322.
    • (1991) Biophys. J. , vol.59 , pp. 313-322
    • Varo, G.1    Lanyi, J.K.2
  • 28
    • 0030901231 scopus 로고    scopus 로고
    • The tertiary structural changes in bacteriorhodopsin occur between M states: X-ray diffraction and Fourier transform infrared spectroscopy
    • Sass, H. J., Schachowa, I. W., Rapp, G., Koch, M. H., Oesterhelt, D., Dencher, N. A., and Büldt, G. (1997) The tertiary structural changes in bacteriorhodopsin occur between M states: X-ray diffraction and Fourier transform infrared spectroscopy, EMBO J. 16, 1484-1491.
    • (1997) EMBO J. , vol.16 , pp. 1484-1491
    • Sass, H.J.1    Schachowa, I.W.2    Rapp, G.3    Koch, M.H.4    Oesterhelt, D.5    Dencher, N.A.6    Büldt, G.7
  • 29
    • 0036199841 scopus 로고    scopus 로고
    • Transient exposure of hydrophobic surface in the photoactive yellow protein monitored with Nile Red
    • Hendriks, J., Gensch, T., Hviid, L., van der Horst, M. A., Hellingwerf, K. J., and van Thor, J. J. (2002) Transient exposure of hydrophobic surface in the photoactive yellow protein monitored with Nile Red, Biophys. J. 82, 1632-1643.
    • (2002) Biophys. J. , vol.82 , pp. 1632-1643
    • Hendriks, J.1    Gensch, T.2    Hviid, L.3    Van Der Horst, M.A.4    Hellingwerf, K.J.5    Van Thor, J.J.6
  • 30
    • 0032857645 scopus 로고    scopus 로고
    • Kinetics of and intermediates in a photocycle branching reaction of the photoactive yellow protein from Ectothiorhodospira halophila
    • Hendriks, J., van Stokkum, I. H. M., Crielaard, W., and Hellingwerf, K. J. (1999) Kinetics of and intermediates in a photocycle branching reaction of the photoactive yellow protein from Ectothiorhodospira halophila, FEBS Lett. 458, 252-256.
    • (1999) FEBS Lett. , vol.458 , pp. 252-256
    • Hendriks, J.1    Van Stokkum, I.H.M.2    Crielaard, W.3    Hellingwerf, K.J.4
  • 31
    • 0037305871 scopus 로고    scopus 로고
    • Deuterium isotope effects in the photocycle transitions of the photoactive yellow protein
    • Hendriks, J., van Stokkum, I. H. M., and Hellingwerf, K. J. (2003) Deuterium isotope effects in the photocycle transitions of the photoactive yellow protein, Biophys. J. 84, 1180-1191.
    • (2003) Biophys. J. , vol.84 , pp. 1180-1191
    • Hendriks, J.1    Van Stokkum, I.H.M.2    Hellingwerf, K.J.3
  • 32
    • 3242662628 scopus 로고    scopus 로고
    • Global and target analysis of time-resolved spectra
    • and Erratum 1658, 262
    • van Stokkum, I. H. M., Larsen, D. S. and van Grondelle, R. (2004) Global and target analysis of time-resolved spectra, Biochim. Biophys. Acta 1657, 82-104, and Erratum 1658, 262.
    • (2004) Biochim. Biophys. Acta , vol.1657 , pp. 82-104
    • Stokkum, I.H.M.1    Larsen, D.S.2    Van Grondelle, R.3
  • 33
    • 0029731183 scopus 로고    scopus 로고
    • Spectral tuning, fluorescence, and photoactivity in hybrids of photoactive yellow protein, reconstituted with native or modified chromophores
    • Kroon, A. R., Hoff, W. D., Fennema, H. P., Gijzen, J., Koomen, G. J., Verhoeven, J. W., Crielaard, W., and Hellingwerf, K. J. (1996) Spectral tuning, fluorescence, and photoactivity in hybrids of photoactive yellow protein, reconstituted with native or modified chromophores, J. Biol. Chem. 271, 31949-31956.
    • (1996) J. Biol. Chem. , vol.271 , pp. 31949-31956
    • Kroon, A.R.1    Hoff, W.D.2    Fennema, H.P.3    Gijzen, J.4    Koomen, G.J.5    Verhoeven, J.W.6    Crielaard, W.7    Hellingwerf, K.J.8
  • 35
    • 0032544202 scopus 로고    scopus 로고
    • New insights into the photocycle of Ectothiorhodospira halophila photoactive yellow protein: Photorecovery of the long-lived photobleached intermediate in the Met 100Ala mutant
    • Devanathan, S., Genick, U. K., Canestrelli, I. L., Meyer, T. E., Cusanovich, M. A., Getzoff, E. D., and Tollin, G. (1998) New insights into the photocycle of Ectothiorhodospira halophila photoactive yellow protein: photorecovery of the long-lived photobleached intermediate in the Met 100Ala mutant. Biochemistry 37, 11563-11568.
    • (1998) Biochemistry , vol.37 , pp. 11563-11568
    • Devanathan, S.1    Genick, U.K.2    Canestrelli, I.L.3    Meyer, T.E.4    Cusanovich, M.A.5    Getzoff, E.D.6    Tollin, G.7
  • 36
    • 0037155256 scopus 로고    scopus 로고
    • Engineering photocycle dynamics. Crystal structures and kinetics of three photoactive yellow protein hinge-bending mutants
    • van Aalten, D. M., Haker, A., Hendriks, J., Hellingwerf, K. J., Joshua-Tor, L., and Crielaard, W. (2002) Engineering photocycle dynamics. Crystal structures and kinetics of three photoactive yellow protein hinge-bending mutants, J. Biol. Chem. 277, 6463-6468.
    • (2002) J. Biol. Chem. , vol.277 , pp. 6463-6468
    • Aalten, D.M.1    Haker, A.2    Hendriks, J.3    Hellingwerf, K.J.4    Joshua-Tor, L.5    Crielaard, W.6
  • 37
    • 0041846661 scopus 로고    scopus 로고
    • pH dependence of the photocycle kinetics of the E46Q mutant of photoactive yellow protein: Protonation equilibrium between I-1 and I-2 intermediates, chromophore deprotonation by hydroxyl uptake, and protonation relaxation of the dark state
    • Borucki, B., Otto, H., Joshi, C. P., Gasperi, C., Cusanovich, M. A., Devanathan, S., Tollin, G., and Heyn, M. P. (2003) pH dependence of the photocycle kinetics of the E46Q mutant of photoactive yellow protein: protonation equilibrium between I-1 and I-2 intermediates, chromophore deprotonation by hydroxyl uptake, and protonation relaxation of the dark state, Biochemistry 42, 8780-8790.
    • (2003) Biochemistry , vol.42 , pp. 8780-8790
    • Borucki, B.1    Otto, H.2    Joshi, C.P.3    Gasperi, C.4    Cusanovich, M.A.5    Devanathan, S.6    Tollin, G.7    Heyn, M.P.8
  • 38
    • 0033974163 scopus 로고    scopus 로고
    • Conformational substates in different crystal forms of the photoactive yellow protein-correlation with theoretical and experimental flexibility
    • van Aalten, D. M., Crielaard, W., Hellingwerf, K. J., and Joshua-Tor, L. (2000) Conformational substates in different crystal forms of the photoactive yellow protein-correlation with theoretical and experimental flexibility, Protein Sci. 9, 64-72.
    • (2000) Protein Sci. , vol.9 , pp. 64-72
    • Van Aalten, D.M.1    Crielaard, W.2    Hellingwerf, K.J.3    Joshua-Tor, L.4
  • 39
    • 11844294715 scopus 로고    scopus 로고
    • A Structural pathway for signaling in the E46Q mutant of photoactive yellow protein
    • Rajagopal S., Anderson S., Srajer V., Schmidt M., Pahl R., Moffat K. (2005) A Structural pathway for signaling in the E46Q mutant of photoactive yellow protein, Structure 13, 55-63.
    • (2005) Structure , vol.13 , pp. 55-63
    • Rajagopal, S.1    Anderson, S.2    Srajer, V.3    Schmidt, M.4    Pahl, R.5    Moffat, K.6
  • 40
    • 0029110488 scopus 로고
    • 1.4 Å structure of photoactive yellow protein, a cytosolic photoreceptor: Unusual fold, active site, and chromophore
    • Borgstahl, G. E., Williams, D. R.; Getzoff E. D. (1995) 1.4 Å structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore, Biochemistry 34, 6278-6287.
    • (1995) Biochemistry , vol.34 , pp. 6278-6287
    • Borgstahl, G.E.1    Williams, D.R.2    Getzoff, E.D.3
  • 41
    • 0034636790 scopus 로고    scopus 로고
    • Water structural changes involved in the activation process of photoactive yellow protein
    • Kandori, H., Iwata, T., Hendriks, J., Maeda, A., Hellingwerf K. J. (2000) Water structural changes involved in the activation process of photoactive yellow protein, Biochemistry 39, 7902-7909.
    • (2000) Biochemistry , vol.39 , pp. 7902-7909
    • Kandori, H.1    Iwata, T.2    Hendriks, J.3    Maeda, A.4    Hellingwerf, K.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.