The marine algal virus PpV01 has an icosahedral capsid with T=219 quasisymmetry

Journal of Virology

Volumn 79, Issue 14, 2005, Pages 9236-9243

  Yan, Xiaodong ^a,c   Chipman, Paul R ^a   Castberg, Tonje ^b   Bratbak, Gunnar ^b   Baker, Timothy S ^a,c  

^a PURDUE UNIVERSITY   (United States)

^b UNIVERSITY OF BERGEN   (Norway)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA;

ALGA; ARTICLE; CAPSOMERE; COASTAL WATERS; CRYOELECTRON MICROSCOPY; DENSITY; DNA VIRUS; EVOLUTION; IMAGE RECONSTRUCTION; LIPID MEMBRANE; MARINE ALGAL VIRUS; NONHUMAN; NORWAY; PHAEOCYSTIS POUCHETII; PHAEOCYSTIS POUCHETII LAGERHEIM; PHAEOCYSTIS POUCHETII VIRUS; PRIORITY JOURNAL; THREE DIMENSIONAL IMAGING; VIRUS CAPSID; VIRUS ISOLATION; VIRUS MORPHOLOGY;

CAPSID; CRYOELECTRON MICROSCOPY; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; PHYCODNAVIRIDAE;

ALGAE; DNA VIRUSES; MIRIDAE; PHAEOCYSTIS POUCHETII;

EID: 21644489830     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.79.14.9236-9243.2005     Document Type: Article

References (37)

1. Abrescia, N. G., J. J. Cockburn, J. M. Grimes, G. C. Sutton, J. M. Diprose, S. J. Butcher, S. D. Fuller, C. San Martin, R. M. Burnett, D. I. Stuart, D. H. Bamford, and J. K. Bamford. 2004. Insights into assembly from structural analysis of bacteriophage PRD1. Nature 432:68-74.
2. Baker, T. S., and R. H. Cheng. 1996. A model-based approach for determining orientations of biological macromolecules imaged by cryoelectron microscopy. J. Struct. Biol. 116:120-130.
3. Baker, T. S., N. H. Olson, and S. D. Fuller. 1999. Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs. Microbiol. Mol. Biol. Rev. 63:862-922.
4. Bates, T. S., B. K. Lamb, A. Guenther, J. Dignon, and R. E. Stoiber. 1992. Sulfur emission to the atmosphere from natural sources. J. Atmos. Chem. 14:315-337.
5. Belnap, D. M., N. H. Olson, and T. S. Baker. 1997. A method for establishing the handedness of biological macromolecules. J. Struct. Biol. 120:44-51.
6. Benson, S. D., J. K. Bamford, D. H. Bamford, and R. M. Burnett. 2004. Does common architecture reveal a viral lineage spanning all three domains of life? Mol. Cell 16:673-685.
7. Brussard, C. P. D., R. Riegman, A. A. Noordeloos, G. C. Cadee, H. Witte, A. J. Kop, G. Nieuwland, F. C. van Duyl, and R. P. M. Bak. 1995. Effects of grazing, sedimentation and phytoplankton cell lysis on the structure of a coastal pelagic food web. Mar. Ecol. Prog. Ser. 123:259-271.
8. Caspar, D. L., and A. Klug. 1962. Physical principles in the construction of regular viruses. Cold Spring Harb. Symp. Quant. Biol. 27:1-24.
9. Castberg, T., R. Thyrhaug, A. Larsen, R.-A. Sandaa, M. Hedal, J. L. Van Etten, and G. Bratbak. 2002. Isolation and characterization of a virus that infects Emiliania huxleyi (Haptophyceae). J. Phycol. 38:767-774.
10. Cuillel, M., F. Tripier, J. Braunwald, and B. Jacrot. 1979. A low resolution structure of frog virus 3. Virology 99:277-285.
11. Davidson, A. T., and H. J. Marchant. 1992. The biology and ecology of Phaeocystis (Prymnesiophyceae). Prog. Phycol. Res. 8:1-45.
12. DeRosier, D. J. 2000. Correction of high-resolution data for curvature of the Ewald sphere. Ultramicroscopy 81:83-98.
13. Earnshaw, W. C., J. King, and F. A. Eiserling. 1978. The size of the bacteriophage T4 head in solution with comments about the dimension of virus particles as visualized by electron microscopy. J. Mol. Biol. 122:247-253.
14. Furcinitti, P. S., J. van Oostrum, and R. M. Burnett. 1989. Adenovirus polypeptide IX revealed as capsid cement by difference images from electron microscopy and crystallography. EMBO J. 8:3563-3570.
15. Guillard, R. R. L. 1975. Culture of phytoplankton for feeding marine invertebrates, p. 26-60. In W. L. Smith and M. H. Chanley (ed.), Culture of marine invertebrate animals. Plenum Press, New York, N.Y.
16. Iyer, L. M., L. Aravind, and E. V. Koonin. 2001. Common origin of four diverse families of large eukaryotic DNA viruses. J. Virol. 75:11720-11734.
17. Jacobsen, A., G. Bratbak, and M. Heldal. 1996. Isolation and characterisation of a virus infecting Phaeocystis pouchetii (Prymnesiophyceae). J. Phycol. 32:923-927.
18. Jensen, G. J., and R. D. Kornberg. 2000. Defocus-gradient corrected back-projection. Ultramicroscopy 84:57-64.
19. Kawakami, H., and N. Kawakami. 1978. Behavior of a virus in a symbiotic system, Paramecium bursaria-zoochlorella. J. Protozool. 25:217-225.
20. Kelly, D. C., and T. W. Tinsley. 1974. Iridescent virus replication: a microscope study of Aedes aegypti and Antherea eucalypti cells in culture infected with iridescent virus types 2 and 6. Microbios 9:75-93.
21. Lancelot, C., G. Billen, A. Sournia, T. Weisse, F. Coljin, M. Veldhuis, A. Davies, and P. Wassman. 1987. Phaeocystis blooms and nutrient enrichment in the continental coastal zones of the North Sea. Ambio 16:38-46.
22. Lancelot, C., P. Wassmann, and H. Barth. 1994. Ecology of Phaeocystis-dominated ecosystems. J. Mar. Syst. 5:1-4.
23. La Scola, B., S. Audic, C. Robert, L. Jungang, X. de Lamballerie, M. Drancourt, R. Birtles, J. M. Claverie, and D. Raoult. 2003. A giant virus in amoebae. Science 299:2033.
24. Malin, G., W. H. Wilson, G. Bratbak, P. S. Liss, and N. H. Mann. 1998. Elevated production of dimethylsulfide resulting from viral infection of cultures of Phaeocystis pouchetii. Limnol. Oceanogr. 43:1389-1393.
25. Nandhagopal, N., A. A. Simpson, J. R. Gurnon, X. Van, T. S. Baker, M. V. Graves, J. L. Van Etten, and M. G. Rossmann. 2002. The structure and evolution of the major capsid protein of a large, lipid-containing DNA virus. Proc. Natl. Acad. Sci. USA 99:14758-14763.
26. Raoult, D., S. Audic, C. Robert, C. Abergel, P. Renesto, H. Ogata, B. La Scola, M. Suzan, and J. M. Claverie. 2004. The 1.2-megabase genome sequence of Mimivirus. Science 306:1344-1350.
27. Rayment, I, T. S. Baker, D. L. Caspar, and W. T. Murakami. 1982. Polyoma virus capsid structure at 22.5 A resolution. Nature 295:110-115.
28. Rux, J. J., P. R. Kuser, and R. M. Burnett. 2003. Structural and phylogenetic analysis of adenovirus hexons by use of high-resolution X-ray crystallographic, molecular modeling, and sequence-based methods. J. Virol. 77:9553-9566.
29. Spencer, J. V., W. W. Newcomb, D. R. Thomsen, F. L. Homa, and J. C. Brown. 1998. Assembly of the herpes simplex virus capsid: preformed triplexes bind to the nascent capsid. J. Virol. 72:3944-3951.
30. Stewart, P. L., R. M. Burnett, M. Cyrklaff, and S. D. Fuller. 1991. Image reconstruction reveals the complex molecular organization of adenovirus. Cell 67:145-154.
31. Tidona, C. A., P. Schnitzler, R. Kehm, and G. Darai. 1998. Is the major capsid protein of iridoviruses a suitable target for the study of viral evolution? Virus Genes 16:59-66.
32. Van Etten, J. L. 2003. Unusual life style of giant chlorella viruses. Annu. Rev. Genet. 37:153-195.
33. Wrigley, N. G. 1969. An electron microscope study of the structure of Sericesthis iridescent virus. J. Gen. Virol. 5:123-134.
34. Van, X., V. Bowman, G. Murti, R. Goorha, A. Hyatt, and T. S. Baker. 2001. 3D image reconstruction of frog virus 3 at 2.6 nm. Microsc. Microanal. 7:746-747.
35. Van, X., N. H. Olson, J. L. Van Etten, M. Bergoin, M. G. Rossmann, and T. S. Baker. 2000. Structure and assembly of large lipid-containing dsDNA viruses. Nat. Struct. Biol. 7:101-103.
36. Zhang, X., S. Walker, P. R. Chipman, M. L. Nibert, and T. S. Baker. 2003. Reovirus polymerase λ3 localized by cryo-electron microscopy of virions at a resolution of 7.6 Å. Nat. Struct. Biol. 10:1011-1018.
37. Zhao, R., D. C. Pevear, M. J. Kremer, V. L. Giranda, J. A. Kofron, R. J. Kuhn, and M. G. Rossmann. 1996. Human rhinovirus 3 at 3.0 A resolution. Structure 4:1205-1220.