Capturing and supporting contexts for scientific data sharing via the biological sciences collaboratory

Proceedings of the ACM Conference on Computer Supported Cooperative Work, CSCW

Volumn , Issue , 2004, Pages 409-418

  Chin Jr , George ^a   Lansing, Carina S ^a  

^a PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

Collaboratory; Data provenance; Data sharing; Data sharing contexts; Data centric collaboration; Metadata; Scientific workflow; Tool centric collaboration

Indexed keywords

BIOMEDICAL ENGINEERING; DATA REDUCTION; METADATA; NATURAL SCIENCES COMPUTING; SOCIAL ASPECTS; WORLD WIDE WEB;

BIOLOGICAL DATA; DATA PROVENANCE; DATA SETS; DATA SHARING CONTEXTS; DATA-CENTRIC COLLABORATION; SCIENTIFIC WORKFLOW; TOOL-CENTRIC COLLABORATION;

COMPUTER SUPPORTED COOPERATIVE WORK;

EID: 21644488457     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1031607.1031677     Document Type: Conference Paper

References (29)

1. Apache Software Foundation. Jetspeed. http://jakarta.apache.org/jetspeed/site/index.html.
2. Apache Software Foundation. The Jakarta Slide Project. http://jakarta.apache.org/slide.
3. Arzberger, P., and Finhold, T.A. 2002. "Data and Collaboratories in the Biomedical Community." National Biomedical Computation Resource at the University of California, San Diego (NTH award RR08605).
4. Bhandarkar, M., Budescu, G., Humphrey, W.F., Izaguirre, J.A., Izrailev, S., Kalé, L.V., Kosztin, D., Molnar, F., Phillips, J.C., and Schulten, K. 1999. "BioCoRE: A Collaboratory for Structural Biology." Proceedings of the SCS International Conference on Web-Based Modeling and Simulation, San Francisco, CA, pp. 242-251.
5. Birnholtz, J.P. and Bietz, M.J. 2003. "Data at Work: Supporting Sharing in Science and Engineering." Proceedings of the 2003 International ACM SIGGROUP Conference on Supporting Group Work, Sanibel Island, FL, pp. 339-348.
6. Bourne, P.E., Gribskov, M., Johnson, G., Moreland, J., and Weissig, H. 1998. "A Prototype Molecular Interactive Collaborative Environment (MICE)." Proceeding of the 1998 Pacific Symposium on Biocomputing, Kapalua, HI, pp. 118-129.
7. Brazma, A., Hingamp, P., Quackenbush, J., Sherlock, G., Spellman, P., Stoeckert, C., Aach, J., Ansorge, W., Ball, C.A., Causton, H.C., Gaasterland, T., Glenisson, P., Holstege, F.C., Kim, I.F., Markowitz, V., Matese, J.C., Parkinson, H., Robinson, A., Sarkans, U., Schulze-Kremer, S., Stewart, J., Taylor, R., Vilo, J., and Vingron, M. 2001. "Minimum Information About a Microarray Experiment (MIAME)-Toward Standards for Microarray Data." Natural Genetics, 29(4), pp. 365-371.
8. Brazma, A., Parkinson, H., Sarkans, U., Shojatalab, M., Vilo, J., Abeygunawardena, N., Holloway, E., Kapushesky, M., Kemmeren, P., Lara, G.G., Oezcimen, A., Rocca-Serra, P., and Sansone, S.A. 2003. "ArrayExpress-A Public Repository for Microarray Gene Expression Data at the EBI." Nucleic Acids Research, 31(1), pp. 68-71.
9. Edgar, R., Domrachev, M., and Lash, A.E. 2002. "Gene Expression Omnibus: NCBI Gene Expression and Hybridization Array Data Repository." Nucleic Acids Research, 30(1), pp. 207-210.
10. IBM. Lotus Instant Messaging (Sometime). http://www.lotus.com/products/lotussametime.nsf/wdocs/homepage.
11. Louis, K.S., Jones, L.M., and Campbell, E.G. 2002. "Sharing in Science." American Scientist, 90(4): pp. 304-307.
12. Kellogg, W. A. 1990. "Qualitative Artifact Analysis." Proceedings of INTERACT 90, Amsterdam, The Netherlands, pp. 193-198.
13. Macedonia, M.R. and Brutzman, D.P., "MBone Provides Audio and Video Across the Internet." IEEE Computer, 27(4), pp. 30-36.
14. Mangalam, H., Stewart, J., Zhou, J., Schlauch, K., Waugh, M., Chen, G., Farmer, A.D., Colello, G., and Weller, J.W. 2001. "GeneX: An Open Source Gene Expression Database and Integrated Tool Set." IBM Systems Journal, 40(2), pp. 552-569.
15. Merton, R.K. 1968. Social Theory and Social Structure. Free Press, New York.
16. Microarray Gene Expression Data Society. MGED - International Meetings on Microarray Gene Expression Databases Group. http://www.mged.org/index.html.
17. Microsoft Corporation. NetMeeting. http://www.microsoft.com/windows/netmeeting/default.asp.
18. Michigan State University. Shewanella Federation. http://www.shewanella.org/home.sjsp.
19. Myers, J.D., Allison, T.C., Bittner, S., Didier, B., Frenklach, M., Green, W.H., Ho, Y., Hewson, J., Koegler, W., Lansing, C., Leahy, D., Lee, M., McCoy, R., Minkoff, M., Nijsure, S., von Laszewski, G., Montoya, D., Pancerella, C., Pinzon, R., Pitz, W., Rahn, L.A., Ruscic, B., Schuchardt, K., Stephan, E., Wagner, A., Windus, T., and Yang, C. 2004. "A Collaborative Informatics Infrastructure for Multi-scale Science." Proceedings of the Challenges of Large Applications in Distributed Environments (CLADE) Workshop, Honolulu, HI.
20. Myers, J.D., Chappell, A.R., Elder, M., Geist, A., and Schwidder, J. 2003. "Re-Integrating the Research Record." Computing in Science and Engineering, May/June, pp 44-50.
21. Olson, G.M., Finholt, T.A., and Teasley, S.D. 2000. "Behavioral Aspects of Collaboratories." In Koslow, S.H. and Huerta, M.F. (eds.), Electronic Collaboration in Science, Lawrence Erlbaum Associates, Mahwah, NJ.
22. Peltier, S.T. and Ellisman, M.H. 2003. "The Biomedical Informatics Research Network." In Foster, I. and Kesselman, C. (eds.), The Grid 2, Morgan Kaufmann, San Francisco.
23. Shortliffe, E.H., Barnett, O., Cimino, J.J., Greenes, R.A., and Patel, V.L. 1996. "InterMed: An Internet-Based Medical Collaboratory." Proceedings of INET'96, the Annual Meeting of the Internet Society, Montreal, Canada.
24. University of California, San Francisco. Molecular Modeling "Collaboratory." http://www.cgl.ucsf.edu/Research/collaboratory.
25. University of Michigan. CHEF Information Site. http://chefproject.org/portal.
26. University of Michigan. Science of Collaboratories. http://www.scienceofcollaboratories.org.
27. Whitehead, E.J. and M. Wiggins. 1998. "WebDAV: IETF standard for collaborative authoring on the Web." IEEE Internet Computing, 2(5): pp. 34-40.
28. Wouters, P. and Schröder, P. (eds.). 2003. Promise and Practice in Data Sharing. Book series: Wouters, P. and Schröder, P. (eds.), The Public Domain of Digital Research Data, NIWI-KNAW, Amsterdam.
29. Wulf, W. 1993. "The Collaboratory Opportunity." Science 261, (13 Aug 1993), pp. 854-855.