Variability of ribosomal DNA ITS-2 and its utility in detecting genetic relatedness of pearl oyster

Marine Biotechnology

Volumn 7, Issue 1, 2005, Pages 40-45

  He, Maoxian ^a   Huang, Liangmin ^a   Shi, Jianhua ^a   Jiang, Yinping ^a  

^a SOUTH CHINA SEA INSTITUTE OF OCEANOLOGY   (China)

Author keywords

Internal transcribed spacer 2; Pearl oyster; Phylogenetic analysis; Species identification; Variability

Indexed keywords

AMPLIFICATION; BIOMARKERS; CONCENTRATION (PROCESS); DNA; GENES; GENETIC ENGINEERING; MOLECULAR BIOLOGY; RNA;

GENE SEQUENCES; GENETIC VARIATIONS; PEARL OYSTERS; PHYLOGENETIC ANALYSIS;

MARINE BIOLOGY;

PRIMER DNA; RIBOSOMAL SPACER DNA;

RELATEDNESS;

ANIMAL; ARTICLE; CHINA; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA BASE COMPOSITION; DNA SEQUENCE; GENETIC VARIABILITY; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OYSTER; PHYLOGENY; SEQUENCE ALIGNMENT; SPECIES DIFFERENCE;

ANIMALS; BASE COMPOSITION; BASE SEQUENCE; CHINA; CLUSTER ANALYSIS; DNA PRIMERS; DNA, RIBOSOMAL SPACER; MOLECULAR SEQUENCE DATA; OSTREIDAE; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; VARIATION (GENETICS);

OSTREIDAE; PINCTADA;

EID: 21644461941     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-004-0003-6     Document Type: Article

References (23)

1. F.T. Bakker J.L. Olsen W.T. Stam C. van De Hoek 1992 Nuclear ribosomal DNA internal transcribed spacers (ITS1 and ITS2) define discrete biogeographic groups in Cladophora albida (Chlorphyta) J Phycol 28 839 845
2. D.A. Caporale B.F. Beal R. Rocby RJ. Van Beneden 1997 Population structure of Mya arenaria along the New England coastline Mol Mar Biol Biotechnol 6 33 39
3. C.A. Chen C.P. Chen T.Y. Fan J.K. Yu H.L. Hsieh 2002 Nucleotide sequences of ribosomal internal transcribed spacers and their utility in distinguishing closely related Perinereis Polychaets (Annelida; Polychaeta; Nereididae) Mar Biotechnol 4 17 29
4. K.H Chu C.P. Li H.Y. Ho 2001 The first internal transcribed spacer (ITS1) of ribosomal DNA as a molecular marker for phylogenetic and population analyses in Crustacea Mar Biotechnol 3 355 361
5. G.N. Fritz J. Conn A. Cokburn J. Seawright 1994 Sequence analysis of the ribosomal DNA internal transcribed spacer 2 from population of Anopheles nuneztovari (Diptera: Culicidae) Mol Biol Evol 11 406 416
6. D.J. Harris K.A. Crandall 2000 Intragenomic variation within ITS1 and ITS2 of freshwater crayfishes (Decapoda: Cambaridae): implications for phylognentic and microsatellite studies Mol Biol Evol 17 284 291
7. L. van Herwerden D. Blain T. Agatsuma 1999 Intra- and inter-individual variation in ITS1 of Paragonimus westermani (Trematoda: Digenea) and related species: implications for phylogenetic studies Mol Phylogen Evol 12 1 67 73
8. M.D.M. Hillis S.K. Davis 1988 Ribosomal DNA: intraspecific polymorphism concerted evolution and phytogeny reconstruction Syst Zool 37 63 66
9. A. Hugall J. Stanton C. Moritz 1999 Reticulate evolution and origins of ribosomal internal transcribed spacer diversity in apomictic Meloidogyne Mol Biol Evol 16 157 164
10. W.G. Jiang Y.Y. Wei 1986 Studies on the caryotypes of six species of the Pinctada (Pteriidae, Bivalvia). Transactions of the Chinese Society of Malacology (No.2) Science Press Beijing, China 58 64
11. W.G. Jiang Y.Y. Wei G. Li 1983 Studies on the cultivated interspecific hybridizations between pairs of Pinctada fucata, P. chemnitzi and P. maxima (Mollusca, Bivalvia), II: observation on the chromosomes of fertilization and hybrids Tropic Oceanol 2 4 316 320
12. E. Kenchington C.J. Bird J. Osborne M. Reith 2002 Novel repeat elements in the nuclear ribosomal RNA operon of the flat oysters Ostrea edulis C. Linnaeus, 1785 and O. angasi Sowerby, 1871 J Shellfish Res 21 2 697 705
13. W.H.C.F. Kooistra 1992 Biogeography of Cladophoropsis membranacea (Chlorphyta) based on comparison of nuclear DNA ITS sequences J Phycol 28 660 668
14. S.B. Lee J.W. Taylor 1992 Phylogeny of five fungus-like prototistan Phytophthora species, inferred from the internal transcribed spacers of ribosomal DNA Mol Biol Evol 9 636 653
15. G Li W.G Jiang Y.Y. Wei 1983 Studies on the cultivated interspecific hybridizations between pairs of Pinctada fucata, P. chemnitzi and P. maxima (Mollusca, Bivalvia), III: comparative study on zymograms Tropic Oceanol 2 4 321 328
16. M.J. Lopez-Pinon A. Insua J. Mendez 2002 Identification of four scallop species using PCR and restriction analysis of the ribosomal DNA internal transcribed spacer region Mar Biotechnol 4 495 502
17. D.P. Morgan D. Blair 1998 Trematode and Monogenean rRNA ITS secondary structure support a four-domain model J Mol Evol 47 406 419
18. M.J.H. van Oppen B.L. Willis H.W.J.A. van Vugt D.J. Miller 2000 Examination of species boundaries in the Acropora Cervicornis (Scheractinia, Cnidaria) using nuclear DNA sequence analysis Mol Evol 9 1363 1374
19. A.P. Vogler R. DeSalle 1994 Evolution and phylogenetic information content of the ITS-1 region in the tiger bettle Cicindella dorsalis Mol Biol Evol 11 393 405
20. Z. Wang 1978 The studies on pearl oysters (Pteriidae) growing on the coasts of China Stud Mar Sinica 14 101 115
21. Y.Y. Wei W.G. Jiang G. Li 1983 Studies on the cultivated interspecific hybridizations between pairs of Pinctada fucata, P. chemnitzi and P. maxima (Mollusca, Bivalvia), I: cultivated hybridizations and observations on the hybrids Tropic Oceano 2 4 309 315
22. E.T. Yu M.A. Juini-Menez V.D. Monje 2000 Sequence variation in the ribosomal DNA internal transcribed spacer of Tridacna crocea Mar Biotechnol 2 511 516
23. X. Yu X. Kong Z. Zhuang Y Liu L. Song 2001 Sequence study and potential uses of ribosomal DNA internal transcribed spacers in scallop Chlamys farreri J Fishery Sci China 8 1 6 9