The complete mitochondrial genomes sequences of Asio flammeus and Asio otus and comparative analysis

Science in China, Series C: Life Sciences

Volumn 47, Issue 6, 2004, Pages 510-520

  Sun, Yi ^a   Ma, Fei ^a   Xiao, Bing ^a   Zheng, Junjie ^b   Yuan, Xiaodong ^b   Tang, Minqian ^b   Wang, Li ^c   Yu, Yefei ^c   Li, Qingwei ^a  

^a LIAONING NORMAL UNIVERSITY   (China)

^b Takara Biotech Dalian Co Ltd   (China)

^c Administrative Office of the Natural Protective Zone of Snake Island Lao Tie Hill   (China)

Author keywords

Asio flammeus; Asio otus; Control region; Mitochondrial genome; Repeated sequence

Indexed keywords

BIOLOGY; BIOTECHNOLOGY; GENES; GENETIC ENGINEERING;

ASIO FLAMMEUS; ASIO OTUS; CONTROL REGION; EVOLUTION MECHANISMS; MITOCHONDRIAL GENOMES; PSEUDO CONTROL REGION; REPEATED SEQUENCE;

DNA SEQUENCES;

ASIO FLAMMEUS; ASIO OTUS; AVES; GALLUS GALLUS; MYXINE GLUTINOSA; VERTEBRATA;

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; COMPARATIVE STUDY; DNA SEQUENCE; GENETICS; GENOME; HUMAN; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OWL; REGULATOR GENE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

ANIMALS; BASE SEQUENCE; DNA, MITOCHONDRIAL; GENOME; HUMANS; LOCUS CONTROL REGION; MOLECULAR SEQUENCE DATA; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; STRIGIFORMES;

EID: 21644447996     PISSN: 10069305     EISSN: None     Source Type: Journal    
DOI: 10.1360/04yc0117     Document Type: Article

References (43)

1. Stoneking, M., Soodyall, H., Human evolution and the mitochondrial genome, Curr. Opin. Genet. Dev., 1996, 6(6): 731-736.
2. Zardoya, R., Meyer, A., The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolloi) supports its phylogenetic position as a close relative of land vertebrates, Genetics, 1996, 142: 1249-1263.
3. Naylor, G. J., Brown, W. M., Amphioxus mitochondrial DNA, chordate phylogeny, and the limits of inference based on comparisons of sequences, Syst. Biol., 1998, 47: 61-76.
4. Rasmussen, A. S., Arnason, U., Phylogenetic studies of complete mitochondrial DNA molecules place cartilaginous fishes within the tree of bony fishes, J. Mol. Evol., 1999, 48: 118-123.
5. Anderson, S., Bankier, A. T., Barrell, B. G. et al., Sequence and organization of the human mitochondrial genome, Nature, 1981, 290: 457-465.
6. Li, Q. W., Chen, Y. F., Enlarge the mitochondrial genome in bird, Zoological Research (in Chinese), 1996, 17(4): 376, 384, 392.
7. Haring, E., Kruckenhauser, L., Gamauf, A. et al., The complete sequence of the mitochondrial genome of Buteo buteo (Aves, Accipitridae) indicates an early split in the phylogeny of raptors, Mol. Biol. Evol., 2001, 18(10): 1892-1904.
8. Mindell, D. P., Sorenson, M. D., Dimcheff, D. E. et al., Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes, Syst. Biol., 1999, 48 (1): 138-152.
9. Harrison, G. L., Mclenachan, P. A., Phillips, M. J. et al., Four new avian mitochondrial genomes help get to basic evolutionary questions in the Late Cretaceous, Mol. Biol. Evol., 2004, 21(6): 974-983.
10. Arnason, U., Gullberg, A., Widegren, B., The complete nucleotide sequence of the mitochondrial DNA of the fin whale, Balaenoptera physalus, J. Mol. Evol., 1991, 33: 556-568.
11. Sorenson, M. D., Ast, J. C., Dimcheff, D. E. et al., Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates, Mol. Phylogenet. Evol., 1999, 12(2): 105-114.
12. Thompson, J. D., Gibson, T. J., Plewniak, F. et al., The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools, Nucleic Acids Res., 1997, 24: 4876-4882.
13. Desjardins, P., Morais, R., Sequence and gene organization of the chicken mitochondrial genome, J. Mol. Biol., 1990, 212: 599-634.
14. Mindell, D. P., Sorenson, M. D., Dimcheff, D. E., Multiple independent origins of mitochondrial gene order in birds, Proc. Natl. Acad. Sci. USA, 1998, 95: 10693-10697.
15. Slack, K. E., Janke, A., Penny, D. et al., Two new avian mitochondrial genomes (penguin and goose) and a summary of birds and reptile mitogenomic features, Gene, 2003, 302: 43-52.
16. Mindell, D. P., Sorenson, M. D., Dimcheff, D. E., An extra nucleotide is not translated in mitochondrial ND3 of some birds and turtles, Mol. Biol. Evol., 1998, 15(11): 1568-1571.
17. Brown, G. G., Gadaleta, G., Pepe, G. et al., Structural conservation and variation in the D-loop containing region of vertebrate mitochondrial DNA, J. Mol. Biol., 1986, 192: 503-511.
18. Saccone, C., Pesole, G., Sbisa, E., The main regulatory region of mammalian mitochondrial DNA: Structure-function model and evolutionary pattern, J. Mol. Evol., 1991, 33: 83-91.
19. Ruokonen, M., Kvist, L., Structure and evolution of the avian mitochondrial control region, Mol. Phylogenet. Evol., 2002, 23: 422-432.
20. Delarbre, C., Rasmussen, A. S., Arnason, U. et al., The complete mitochondrial genome of the hagfish Myxine glutinosa: Unique features of the control region, J. Mol. Evol., 2001, 53: 634-641.
21. Bensch, S., Harlid, A., Mitochondrial genomic rearrangements in songbirds, Mol. Biol. Evol., 2000, 17(1): 107-113.
22. Haddrath, O., Baker, A. J., Complete mitochondrial DNA genome sequences of extinct birds: Ratite phylogenetics and the vicariance biogeography hypothesis, Proc. R. Soc. Lond. B., 2001, 268: 939-945.
23. Nishibori, M., Hayashi, T., Tsudzuki, M. et al., Complete sequence of the Japanese quail (Cotumix japonica) mitochondrial genome and its genetic relationship with related species, Anim. Genet., 2001, 32(6): 380-385.
24. Ojala, D., Montoya, J., Attardi, G., tRNA punctuation model of RNA processing in human mitochondria. Nature, 1981, 290: 470-474.
25. Crick, F. H., Codon-anticodon pairing: The Wobble Hypothesis, J. Mol. Biol., 1966, 19: 548-555.
26. Chen, W. C., Chen, Z. H., Wang, Z. Q. et al., Symmetrial analysis of the motochondrial and genomic codes, Acta Biophysica Sinica (in Chinese), 2002, 18: 87-94.
27. Moritz, C., Dowling, T. E., Brown, W. M., Evolution of animal mitochondrial DNA: Relevance for population biology and systematics, Ann. Rev. Ecol. Syst., 1987, 18: 269-292.
28. Buroker, N. E., Brown, J. R., Gilbert, T. A. et al., Length heteroplasmy of sturgeon mitochondrial DNA: An illegitimate elongation model, Genetics, 1990, 124: 157-163.
29. Faber, J. E., Stepien, C. A., Tandemly repeated sequences in the mitochondrial DNA control region and phylogeography of the pike-perches Stizostedion, Mol. Phylogenet. Evol., 1998, 10: 310-322.
30. Ohno, K., Tanaka, M., Suzuki, H. et al., Identification of a possible control element, Mt5, in the major noncoding region of mitochondrial DNA by intraspecific nucleotide conservation, Biochem. Int., 1991, 24(2): 263-271.
31. Kumar, S., Suzuki, H., Onoue, S. et al., Rat mitochondrial mtDNA binding proteins to inter-specifically conserved sequences in the displacement loop region of vertebrate mtDNA, Biochem. Mol. Biol. Int., 1995, 36(5): 973-981.
32. Nesbo, C. L., Arab, M. O., Jakobsen, K. S., Heteroplasmy, length and sequence variation in the mtDNA control region of three percid fish species (Perca fluviatilis, Acerina cernua, Stizostedion lucioperca), Genetics, 1998, 148: 1907-1919.
33. Delport, W., Ferguson, J. W., Bloomer, P., Characterization and evolution of the mitochondrial DNA control region in Hornbills (Bucerotifoormes), J. Mol. Evol., 2002, 54: 794-806.
34. Randi, E., Lucchini, V., Organization and evolution of the mitochondrial DNA control region in the Avian Genus Alectoris, J. Mol. Evol., 1998, 47: 449-462.
35. Fumagalli, L., Taberlet, P., Favre, L. et al., Origin and evolution of homologous repeated sequences in the mitochondrial DNA control region of shrews, Mol. Biol. Evol., 1996, 13(1): 31-46.
36. Crochet, P. A., Desmarais, E., Slow rate of evolution in the mitochondrial control region of gulls (Aves: Laridae), Mol. Biol. Evol., 2000, 17(12): 1797-1806.
37. Sbisa, E., Tanzariello, F., Reyes, A. et al., Mammalian mitochondrial D-loop region structural analysis: Identification of new conserved sequences and their functional and evolutionary implications, Gene, 1997, 205: 125-140.
38. Casane, D., Dennebouy, N., Rochambeau, H. et al., Nonneutral evolution of tandem repeats in the mitochondrial DNA control region of Lagomorphs, Mol. Biol. Evol., 1997, 14(8): 779-789.
39. Ravage, R. G., Monje, V. D., Juinio-Menez, M. A., Length and sequence variability in mitochondrial control region of the Milkfish, Chanos chanos, Mar. Biotechnol., 2002, 4: 40-50.
40. Douzery, E., Randi, E., The mitochondrial control region of Cervidae: Evolutionary patterns and phylogenetic content, Mol. Biol. Evol., 1997, 14(11): 1154-1166.
41. Margulis, L., Origin of Eukaryotic Cells, New Haven: Yale University Press, 1970.
42. Andersson, S. G., Zomorodipour, A., Andersson, J. O. et al., The genome sequence of Rickettsia prowazekii and the origin of mitochondria, Nature, 1998, 396(6707): 133-140.
43. Cavalier-Smith, T., The simultaneous symbiotic origin of mitochondria, chloroplasts, and microbodies, Ann. N. Y. Acad. Sci., 1987, 503: 55-71.