cDNA microarray analysis of nerve growth factor-regulated gene expression profile in rat PC12 cells

Neurochemical Research

Volumn 30, Issue 4, 2005, Pages 533-540

  Lee, Kyung Hee ^a   Chun, Jeih Ryu ^b   Hyo, Jeong Hong ^b   Kim, Jiyoung ^a   Lee, Eunjoo H ^a  

^a Kyung Hee University   (South Korea)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

cDNA microarray; Gene expression; Neuronal differentiation; NGF; PC12

Indexed keywords

CELL PROTEIN; COMPLEMENTARY DNA; LIPOPROTEIN LIPASE; MRT 1 PROTEIN; NERVE GROWTH FACTOR; NEURITIN; PDZ PROTEIN; PROTEIN; RHOB GUANINE NUCLEOTIDE BINDING PROTEIN; TROPOMODULIN; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; BIOASSAY; CELL DIFFERENTIATION; CELL STRAIN; CONTROLLED STUDY; DNA DETERMINATION; DNA MICROARRAY; GENE CONTROL; GENE EXPRESSION; GENE EXPRESSION REGULATION; LIPID METABOLISM; MEDICAL RESEARCH; NERVE CELL; NERVE CELL DIFFERENTIATION; NERVE CELL PLASTICITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROGRAM DEVELOPMENT; RAT; REPRODUCIBILITY;

ANIMALS; CELL DIFFERENTIATION; DATA INTERPRETATION, STATISTICAL; DNA, COMPLEMENTARY; FLUORESCENT ANTIBODY TECHNIQUE; GENE EXPRESSION REGULATION; MICROTUBULE-ASSOCIATED PROTEINS; NERVE GROWTH FACTORS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PC12 CELLS; RATS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER;

EID: 21644440933     PISSN: 03643190     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11064-005-2688-y     Document Type: Article

References (26)

1. L. A. Greene A. S. Tischler 1976 Establishment of a noradrenergic clonal line of rat adrenal pheochromocytoma cells which respond to nerve growth factor Proc. Natl. Acad. Sci. USA 73 2424 2428
2. N. H. Lee K. G. Weinstock E. F. Kirkness J. A. Earle-Hughes R. A. Fuldner S. Marmaros A. Glodek J. D. Gocayne M. D. Adams A. R. Kerlavage C. M. Fraser J. C. Venter 1995 Comparative expressed-sequence-tag analysis of differential gene expression profiles in PC-12 cells before and after nerve growth factor treatment Proc. Natl. Acad. Sci. USA 92 8303 8307
3. K. Mayumi T. Yaoi J. Kawai S. Kojima S. Watanabe H. Suzuki 1998 Improved restriction landmark cDNA scanning and its application to global analysis of genes regulated by nerve growth factor in PC12 cells Biochim. Biophys. Acta 1399 10 18
4. A. J. H. Brown C. Hutchings J. F. Burke L. V. Mayne 1999 Application of a rapid method (targeted display) for the identification of differentially expressed mRNAs following NGF-induced neuronal differentiation in PC12 cells Mol. Cell Neurosci 13 119 130
5. J. M. Angelastro L. Klimaschewski S. Tang O. V. Vitolo T. A. Weissman L. T. Donlin M. L. Shelanski L. A. Greene 2000 Identification of diverse nerve growth factor-regulated genes by serial analysis of gene expression (SAGE) profiling Proc. Natl. Acad. Sci. USA 97 10424 10,429
6. S. H. Yang J. S. Kim T. J. Oh M. S. Kim S. W. Lee S. K. Woo H. S. Cho Y. H. Choi Y. H. Kim S. Y. Rha H. C. Chung S. W. An 2003 Genome-scale analysis of resveratrol-induced gene expression profile in human ovarian cancer cells using a cDNA microarray Int. J. Oncol 22 741 750
7. M. W. Pfaffl G. W. Horgan L. Dempfle 2002 Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR Nucleic Acids Res 30 e36
8. D. G. B. Leonard E. B. Ziff L. A. Greene 1987 Identification and characterization of mRNAs regulated by nerve growth factor in PC12 cells Mol. Cell Biol 7 3156 3167
9. T. C. Dickson C. D. Mintz D. L. Benson S. R. J. Salton 2002 Functional binding interaction identified between the axonal CAM L1 and members of the ERM family J. Cell Biol 157 1105 1112
10. S. Kuklinski V. Vladimirova A. Waha H. Kamata P. Pesheva R. Probstmeier 2003 Expression of galectin-3 in neuronally differentiating PC12 cells is regulated both via Ras/MAPK-dependent and -independent signaling pathways J. Neurochem 87 1112 1124
11. Z. Zhang G. Tarone D. C. Turner 1993 Expression of integrin α1β1 is regulated by nerve growth factor and dexamethasone in PC12 cells. Functional consequences for adhesion and neurite outgrowth J. Biol. Chem 268 5557 5565
12. K. P. Claffey W. O. Wilkison B. M. Spiegelman 1992 Vascular endothelial growth factor. Regulation by cell differentiation and activated second messenger pathways J. Biol. Chem 267 16317 16322
13. R. J. Mourey Q. C. Vea J. S. Campbell M. P. Wenderoth S. D. Hauschka E. G. Krebs J. E. Dixon 1996 A novel cytoplasmic dual specificity protein tyrosine phosphatase implicated in muscle and neuronal differentiation J. Biol. Chem 271 3795 3802
14. M. Camps C. Chabert M. Muda U. Boschert C. Gillieron S. Arkinstall 1998 Induction of the mitogen-activated protein kinase phosphatase MKP3 by nerve growth factor in differentiating PC12 FEBS Lett 425 271 276
15. G. S. Naeve M. Ramakrishnan R. Kramer D. Hevroni Y. Cttri L. E. Theill 1997 Neuritin: a gene induced by neural activity and neurotrophins that promotes neuritogenesis Proc. Natl. Acad. Sci. USA 94 2648 2653
16. Y. Kajii S. Muraoka S. Hiraoka K. Fujiyama A. Umino T. Nishikawa 2003 A developmentally regulated and psychostimulant-inducible novel rat gene mrt1 encoding PDZ-PX proteins isolated in the neocortex Mol. Psychiatry 8 434 444
17. A. Weber C. R. Pennise G. G. Babcock V. M. Fowler 1994 Tropomodulin caps the pointed ends of actin filaments J. Cell Biol 127 1627 1635
18. M. A. Sussman S. Sakhi G. Tocco I. Najm M. Baudry L. Kedes S. Schreiber 1994 Neural tropomodulin: developmental expression and effect of seizure activity Dev Brain Res 80 45 53
19. S. S. Scherer 1999 Nodes, paranodes, and incisures: from form to function Ann. N.Y. Acad. Sci 883 131 142
20. S. Einheber G. Zanazzi W. Ching S. Scherer T. A. Milner E. Peles J. L. Salzzer 1997 The axonal membrane protein Caspr, a homologue of Neurexin IV, is a component of the septate-like paranodal junctions that assemble during myelination J. Cell Biol 139 1495 1506
21. A. Hall 1998 Rho GTPases and actin cytoskeleton Science 279 509 514
22. I. Laplante J. Paquin R. Beliveau 2001 RhoB expression is induced after the transient upregulation of RhoA and Cdc42 during neuronal differentiation and influenced by culture substratum and microtubule integrity Dev. Brain Res 129 157 168
23. G. Zalcman V. Closson G. Linares-Cruz F. Lerebours N. Honore A. Tavitian B. Olofsson 1995 Regulation of Ras-related RhoB protein expression during the cell cycle Oncogene 10 1935 1945
24. I. Bjorkhem S. Meaney 2004 Brain cholesterol: long secret life behind a barrier Arterioscler. Thromb. Vasc. Biol 24 806 815
25. D. H. Mauch K. Nagler S. Schumacher C. Goritz E. C. Muller A. Otto F. W. Pfrieger 2001 CNS synaptogenesis promoted by glia-derived cholesterol Science 294 1354 1357
26. R. B. Postuma R. N. Martins R. Cappai K. Beyreuther C. L. Masters D. K. Strickland S. S. Mok D. H. Small 1998 Effects of the amyloid protein precursor of Alzheimer's disease and other ligands of the LDL receptor-related protein on neurite outgrowth from sympathetic neurons in culture FEBS Lett 428 13 16