A novel simian immunodeficieny virus from black mangabey (Lophocebus aterrimus) in the Democratic Republic of Congo

Journal of General Virology

Volumn 86, Issue 7, 2005, Pages 1967-1971

  Takemura, Taichiro ^a   Ekwalanga, Michel ^b   Bikandou, Blaise ^c   Ido, Eiji ^a   Yamaguchi Kabata, Yumi ^d   Ohkura, Sadayuki ^a   Harada, Hirotada ^a   Takehisa, Jun ^e   Ichimura, Hiroshi ^e   Parra, Henri Joseph ^c   Nende, Monique ^f   Mubwo, Eric ^f   Sepole, Midingi ^f   Hayami, Masanori ^a   Miura, Tomoyuki ^a  

^a KYOTO UNIVERSITY   (Japan)

^b Natl Inst of Biomedical Research   (Democratic Republic Congo)

^c Cite Louis Pasteur Laboratoire National de Sante Publique   (Democratic Republic Congo)

^d NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^e KANAZAWA UNIVERSITY   (Japan)

^f Kinshasa Zoo ^*  (Democratic Republic Congo)

Author keywords

[No Author keywords available]

Indexed keywords

CROSS REACTING ANTIBODY; POL PROTEIN;

ARTICLE; CERCOCEBUS; CONTROLLED STUDY; DEMOCRATIC REPUBLIC CONGO; GENE AMPLIFICATION; GENETIC ANALYSIS; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 2; LENTIVIRINAE; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SIMIAN IMMUNODEFICIENCY VIRUS; SPECIES DIFFERENCE; VIRUS ISOLATION; VIRUS TRANSMISSION; ANIMAL; CERCOPITHECUS; CLASSIFICATION; DNA SEQUENCE; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; MONKEY DISEASE; PHYLOGENY; VIROLOGY;

CERCOPITHECUS; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 2; LENTIVIRUS; LOPHOCEBUS; LOPHOCEBUS ATERRIMUS; PRIMATES; SIMIAE; SIMIAN IMMUNODEFICIENCY VIRUS; SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE); SIMIAN IMMUNODEFICIENCY VIRUS (AGM266 ISOLATE); SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE); SIMIAN IMMUNODEFICIENCY VIRUS (AGM385 ISOLATE); SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE); SIMIAN IMMUNODEFICIENCY VIRUS (K78 ISOLATE); SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE); SIMIAN IMMUNODEFICIENCY VIRUS (MM251 ISOLATE); SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE);

ANIMALS; CERCOCEBUS; CERCOPITHECUS; DEMOCRATIC REPUBLIC OF THE CONGO; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SIMIAN ACQUIRED IMMUNODEFICIENCY SYNDROME; SIMIAN IMMUNODEFICIENCY VIRUS;

EID: 21444460906     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.80697-0     Document Type: Article

References (32)

1. Adachi, J. & Hasegawa, M. (1996). MOLPHY version 2.3: programs for molecular phylogenetics based on maximum likelihood. Computer Science Monographs, vol. 28. Tokyo: Institute of Statistical Mathematics.
2. Allan, J. S., Short, M., Taylor, M. E., Su, S., Hirsch, V. M., Johnson, P. R., Shaw, G. M. & Hahn, B. H. (1991). Species-specific diversity among simian immunodeficiency viruses from African green monkeys. J Virol 65, 2816-2828.
3. Bailes, E., Gao, F., Bibollet-Ruche, F., Courgnaud, V., Peeters, M., Marx, P. A., Hahn, B. H. & Sharp, P. M. (2003). Hybrid origin of SIV in chimpanzees. Science 300, 1713.
4. Barlow, K. L., Ajao, A. O. & Clewley, J. P. (2003). Characterization of a novel simian immunodeficiency virus (SIVmonNG1) genome sequence from a mona monkey (Cercopithecus mona). J Virol 77, 6879-6888.
5. Beer, B. E., Bailes, E., Goeken, R. & 9 other authors (1999). Simian immunodeficiency virus (SIV) from sun-tailed monkeys (Cercopithecus solatus): evidence for host-dependent evolution of SIV within the C. lhoesti superspecies. J Virol 73, 7734-7744.
6. Bibollet-Ruche, F., Bailes, E., Gao, F. & 13 other authors (2004). New simian immunodeficiency virus infecting De Brazza's monkeys (Cercopithecus neglectus): evidence for a Cercopithecus monkey virus clade. J Virol 78, 7748-7762.
7. Chen, Z., Telfier, P., Gettie, A., Reed, P., Zhang, L., Ho, D. D. & Marx, P. A. (1996). Genetic characterization of new West African simian immunodeficiency virus SIVsm: geographic clustering of household-derived SIV strains with human immunodeficiency virus type 2 subtypes and genetically diverse viruses from a single feral sooty mangabey troop. J Virol 70, 3617-3627.
8. Clewley, J. P., Lewis, J. C., Brown, D. W. & Gadsby, E. L. (1998). A novel simian immunodeficiency virus (SIVdrl) pol sequence from the drill monkey, Mandrillus leucophaeus. J Virol 72, 10305-10309.
9. Corbet, S., Muller-Trutwin, M. C., Versmisse, P. & 9 other authors (2000). env sequences of simian immunodeficiency viruses from chimpanzees in Cameroon are strongly related to those of human immunodeficiency virus group N from the same geographic area. J Virol 74, 529-534.
10. Courgnaud, V., Salemi, M., Pourrut, X. & 8 other authors (2002). Characterization of a novel simian immunodeficiency virus with a vpu gene from greater spot-nosed monkeys (Cercopithecus nictitans) provides new insights into simian/human immunodeficiency virus phylogeny. J Virol 76, 8298-8309.
11. Courgnaud, V., Abela, B., Pourrut, X., Mpoudi-Ngole, E., Loul, S., Delaporte, E. & Peeters, M. (2003a). Identification of a new simian immunodeficiency virus lineage with a vpu gene present among different cercopithecus monkeys (C. mona, C. cephus, and C. nictitans) from Cameroon. J Virol 77, 12523-12534.
12. Courgnaud, V., Formenty, P., Akoua-Koffi, C., Noe, R., Boesch, C., Delaporte, E. & Peeters, M. (2003b). Partial molecular characterization of two simian immunodeficiency viruses (SIV) from African colobids: SIVwrc from Western red colobus (Piliocolobus badius) and SIVolc from olive colobus (Procolobus verus). J Virol 77, 744-748.
13. Fukasawa, M., Miura, T., Hasegawa, A., Morikawa, S., Tsujimoto, H., Miki, K., Kitamura, T. & Hayami, M. (1988). Sequence of simian immunodeficiency virus from African green monkey, a new member of the HIV/SIV group. Nature 333, 457-461.
14. Gao, F., Bailes, E., Robertson, D. L & 9 other authors (1999). Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes. Nature 397, 436-441.
15. Hahn, B. H., Shaw, G. M., De Cock, K. M. & Sharp, P. M. (2000). AIDS as a zoonosis: scientific and public health implications. Science 287, 607-614.
16. Hayami, M., Ido, E. & Miura, T. (1994). Survey of simian immunodeficiency virus among nonhuman primate populations. Curr Top Microbiol Immunol 188, 1-20.
17. Higgins, D. G. & Sharp, P. M. (1989). Fast and sensitive multiple sequence alignments on a microcomputer. Comput Appl Biosci 5, 151-153.
18. Hirsch, V. M., Dapolito, G. A., Goldstein, S. & 7 other authors (1993). A distinct African lentivirus from Sykes' monkeys. J Virol 67, 1517-1528.
19. Hirsch, V. M., Olmsted, R. A., Murphey-Corb, M., Purcell, R. H. & Johnson, P. R. (1989). An African primate lentivirus (SIVsm) closely related to HIV-2. Nature 339, 389-392.
20. Hirsch, V. M., Campbell, B. J., Bailes, E., Goeken, R., Brown, C., Elkins, W. R., Axthelm, M., Murphey-Corb, M. & Sharp, P. M. (1999). Characterization of a novel simian immunodeficiency virus (SIV) from L'Hoest monkeys (Cercopithecus l'hoesti): implications for the origins of SIVmnd and other primate lentiviruses. J Virol 73, 1036-1045.
21. Huet, T., Cheynier, R., Meyerhans, A., Roelants, G. & Wain-Hobson, S. (1990). Genetic organization of a chimpanzee lentivirus related to HIV-1. Nature 345, 356-359.
22. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
23. Miura, T., Sakuragi, J., Kawamura, M. & 10 other authors (1990). Establishment of a phylogenetic survey system for AIDS-related lentiviruses and demonstration of a new HIV-2 subgroup. AIDS 4, 1257-1261.
24. Peeters, M., Courgnaud, V., Abela, B. & 11 other authors (2002). Risk to human health from a plethora of simian immunodeficiency viruses in primate bushmeat. Emerg Infect Dis 8, 451-457.
25. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
26. Salemi, M., De Oliveira, T., Courgnaud, V., Moulton, V., Holland, B., Cassol, S., Switzer, W. M. & Vandamme, A. M. (2003). Mosaic genomes of the six major primate lentivirus lineages revealed by phylogenetic analyses. J Virol 77, 7202-7213.
27. Takehisa, J., Zekeng, L., Ido, E., Yamaguchi-Kabata, Y., Mboudjeka, I., Harada, Y., Miura, T., Kaptue, L. & Hayami, M. (1999). Human immunodeficiency virus type 1 intergroup (M/O) recombination in Cameroon. J Virol 73, 6810-6820.
28. Tsujimoto, H., Cooper, R. W., Kodama, T. & 9 other authors (1988). Isolation and characterization of simian immunodeficiency virus from mandrills in Africa and its relationship to other human and simian immunodeficiency viruses. J Virol 62, 4044-4050.
29. Tsujimoto, H., Hasegawa, A., Maki, N. & 7 other authors (1989). Sequence of a novel simian immunodeficiency virus from a wild-caught African mandrill. Nature 341, 539-541.
30. Verschoor, E., Fagrouch, Z., Bontjer, I., Niphuis, H. & Heeney, J. (2004). A novel simian immunodeficiency virus isolated from a Schmidt's guenon (Cercopithecus ascanius schmidti). J Gen Virol 85, 21-24.
31. Yamaguchi-Kabata, Y. & Gojobori, T. (2000). Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes. J Virol 74, 4335-4350.
32. Yamaguchi-Kabata, Y., Yamashita, M., Ohkura, S., Hayami, M. & Miura, T. (2004). Linkage of amino acid variation and evolution of human immunodeficiency virus type 1 gp120 envelope glycoprotein (subtype B) with usage of the second receptor. J Mol Evol 58, 333-340.