Differentiation and molecular detection of Canadian necrotic strains of Potato virus Y

Canadian Journal of Plant Pathology

Volumn 27, Issue 1, 2005, Pages 125-131

  Xu, H ^a   Nie, J ^a   De Boer, S H ^a  

^a CANADIAN FOOD INSPECTION AGENCY   (Canada)

Author keywords

Differentiation; Molecular detection; Necrotic stains; Potato virus Y

Indexed keywords

POTATO VIRUS Y; POTYVIRUS; SOLANUM TUBEROSUM; TUBER (GENUS);

EID: 21444437369     PISSN: 07060661     EISSN: 17152992     Source Type: Journal    
DOI: 10.1080/07060660509507203     Document Type: Article

References (38)

1. Beczner, L., Horvath, H., Romhanyi, I., and Forster, H., 1984. Studies on the aetiology of tuber necrotic ringspot disease in potato. Potato Res., 27:339–352.
2. Blanco-Urgoiti, B., Tribodet, M., Leclere, S., Ponz, F., Pérez de San Román, C., Legorburu, F. J., and Kerlan, C., 1998. Characterization of potato potyvirus Y (PVY) isolates from seed potato batches, situation of the NTN, Wilga and Z isolates. Eur. J. Plant Pathol., 104:811–819.
3. Boonham, N., Hims, M., Barker, I., and Spence, N., 1999. Potato virus Y from petunia can cause symptoms of potato tuber necrotic ringspot disease (PTNRD). Eur. J. Plant Pathol., 105:617–621.
4. C strains using RT-PCR. J. Virol. Methods, 102:103–112.
5. N) found recently in Poland. Potato Res., 34:178–182.
6. N) on potatoes in the north western United States. Plant Dis., 86:1177
7. De Boer, S. H., Ward, L. J., Li, X., and Chittaranjan, S., 1995. Attenuation of PCR inhibition in the presence of plant compounds by addition of BLOTTO. Nucleic Acids Res., 23:2567–2568.
8. Ellis, P., Stace-Smith, R., Bowler, G., and Mackenzie, D. J., 1996. Production of monoclonal antibodies for detection and identification of strains of potato virus Y. Can. J. Plant Pathol., 18:64–70.
9. N isolates by PCR-RFLP. Eur. J. Plant Pathol., 102:655–662.
10. N isolates. Arch. Virol., 147:64–70.
11. Jakab, G., Droz, E., Brigneti, G., Baulcombe, D., and Malnoe, P., 1997. Infectious in vivo and in vitro transcripts from a full-length cDNA clone of PVY-N605, a Swiss necrotic isolate of potato virus Y. J. Gen. Virol., 78:3141–3145.
12. Jones, R. A. C., 1990. Strain group specific and virus specific hypersensitive reactions to infection with potyviruses in potato cultivars. Ann. Appl. Biol., 117:93–105.
13. Kerlan, C., Tribodet, M., Glais, L., and Guillet, M., 1999. Variability of potato virus Y in potato crops in France. J. Phytopathol., 147:643–651.
14. Le Romancer, M., Kerlan, C., and Nedellec, M., 1994. Biological characterization of various geographical isolates of potato virus Y inducing superficial necrosis on potato tubers. Plant Pathol., 43:138–144.
15. N for strains that induce tuber necrotic ring necrosis disease. Am. Potato J., 70:827
16. O strain groups. Am. Potato J., 73:309–315.
17. N). Can. J. Plant Pathol., 23:203
18. NTN. J. Virol. Methods, 103:145–156.
19. Nie, X., and Singh, R. P., 2002b. A new approach for the simultaneous differentiation of biological and geographical strains of Potato virus Y by uniplex and multiplex RT-PCR. J. Virol. Methods, 104:41–54.
20. NTN isolates by multiplex RT-PCR. J. Virol. Methods, 113:69–77.
21. Ohshima, K., Inoue, A. K., Ishikawa, Y., Shikata, E., and Gahita, T., 1990. Production and application of monoclonal antibodies specific to ordinary and necrotic strain of potato virus Y. Ann. Phytopathol. Soc. Jpn., 56:508–514.
22. Ohshima, K., Sako, K., Hiraishi, C., Nakagawa, A., Matsuo, K., Ogawa, T., Shikata, E., and Sako, N., 2000. Potato tuber necrotic ringspot disease occurring in Japan:its association with Potato virus Y necrotic strain. Plant Dis., 84:1109–1115.
23. Robaglia, C., Durand-Tardif, M., Tronchet, M., Boudazin, G., Astier-Manifacier, S., and Casse-Delbart, F., 1989. Nucleotide sequence of potato virus Y (N Strain) genomic RNA. J. Gen. Virol., 70:935–947.
24. Rose, D. G., and Hubbard, A. L., 1983. Production of monoclonal antibodies for the detection of potato virus Y. Ann. Appl. Biol., 109:317–321.
25. NTN in the Andes and a hypothesis towards its origin. Fitopathologia, 35:87–90.
26. Sambrook, J., Fritsch, E. F., and Maniatis, T., 1989. Molecular cloning:a laboratory manual, 2nd ed., Cold Spring Harbor, N.Y.:Cold Spring Harbor Laboratory Press.
27. Shiel, P. J., Koop, H. T., and Berger, P. H., 2003. Biological and molecular characterization of potato virus Y isolates from potato. Phytopathology, 93:S78 [Abstr.]
28. Shukla, D. D., and Ward, C. W., 1998. Amino acid sequence homology of coat proteins as a basis for identification and classification of the potyvirus group. J. Gen. Virol., 69:2703–2710.
29. O). Can. J. Plant Pathol., 18:209–224.
30. Singh, M., and Singh, R. P., 1997. Potato virus Y detection sensitivity of RT-PCR depends on the size of fragment amplified. Can. J. Plant Pathol., 19:149–155.
31. NTN subgroup. Can. J. Plant Pathol., 20:227–233.
32. Singh, R. P., McLaren, D. L., Nie, X., and Singh, M., 2003. Possible escape of a recombinant isolate of Potato virus Y by serological indexing and methods of its detection. Plant Dis., 87:679–685.
33. Thole, V., Dalmay, T., Burgyan, J., and Balazs, E., 1993. Cloning and sequencing of potato virus Y (Hungarian isolate) genomic RNA. Gene, 123:149–156.
34. Tomassoli, L., Lumia, V., Cerato, C., and Ghedini, R., 1998. Occurrence of potato tuber necrotic ringspot disease (PTNRD) in Italy. Plant Dis., 82:350
35. Tordo, V. M. J., Chachulska, A. M., Fakhfakh, H., LeRomancer, M., Robaglia, C., and Astier-Manifacier, S., 1995. Sequence polymorphism in the 5'-NTR and in the P1 coding region of Potato virus Y genomic RNA. J. Gen. Virol., 76:939–949.
36. van den Heuvel, J. F. J. M., van der Vlugt, R. A. A., Verbeek, M., de Haan, P. T., and Huttinga, H., 1994. Characteristics of a resistance-breaking isolate of potato virus Y causing tuber necrotic disease. Eur. J. Plant Pathol., 100:347–356.
37. NTN) by reverse transcription and immunocapture polymerase chain reaction. J. Plant Dis. Protect., 103:337–345.
38. N by a 3-primer PCR. J. Virol. Methods, 71:57–68.