A conformational study of α-D-Manp-(1 → 2)-α-D-Manp-(1 → O)-L-Ser by NMR 1H,1H T-ROESY experiments and molecular-dynamics simulations

Carbohydrate Research

Volumn 339, Issue 7, 2004, Pages 1331-1338

  Lycknert, Kristina ^a   Helander, Anne ^b   Oscarson, Stefan ^a   Kenne, Lennart ^c   Widmalm, Göran ^a  

^a STOCKHOLM UNIVERSITY   (Sweden)

^b Q Med AB   (Sweden)

^c SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

Dynamics; Flexibility; Glycosylation; Saccharomyces cerevisiae

Indexed keywords

DEUTERIUM; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE; SOLVENTS; TORSIONAL STRESS;

GLUCOSIDIC TORSION ANGLE; MOLECULAR SIMULATION; PROTON-PROTON DISTANCE;

CARBOHYDRATES;

DEUTERIUM; PROTON; SERINE DERIVATIVE; SUGAR;

ANALYTIC METHOD; ARTICLE; CHEMICAL BOND; CHEMICAL PARAMETERS; CONFORMATION; MOLECULAR DYNAMICS; MOLECULAR MODEL; NUCLEAR OVERHAUSER EFFECT; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE; SIMULATION;

CARBOHYDRATE CONFORMATION; GLYCOSYLATION; MAGNETIC RESONANCE SPECTROSCOPY; MANNOSIDES; MODELS, MOLECULAR; MOLECULAR STRUCTURE; PROTEIN CONFORMATION; PROTEINS; PROTONS; SERINE;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 2142757200     PISSN: 00086215     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.carres.2004.02.022     Document Type: Article

References (37)

1. Lige B., Ma S., van Huystee R.B. Arch. Biochem. Biophys. 386:2001;17-24
2. Opat A.S., Houghton F., Gleeson P.A. Biochem. J. 358:2001;33-40
3. Mer G., Hietter H., Lefèvre J.-F. Nat. Struct. Biol. 3:1996;45-53. 298
4. Gutiérrez Gallego R., Jiménez Blanco J.L., Thijssen-van Zuylen C.W.E.M., Gotfredsen C.H., Voshol H., Duus J.Ø., Schachner M., Vliegenthart J.F.G. J. Biol. Chem. 276:2001;30834-30844
5. Thomson K.A., Carlstedt I., Karlsson N.G., Karlsson H., Hansson G.C. Glycoconjugate J. 15:1998;823-833
6. Löffler A., Doucey M.-A., Jansson A.M., Müller D.R., de Beer T., Hess D., Meldal M., Richter W.J., Vliegenthart J.F.G., Hofsteenge J. Biochemistry. 35:1996;12005-12014
7. Hemmerich S., Leffler H., Rosen S.D. J. Biol. Chem. 270:1995;12035-12047
8. Yuen C.-T., Chai W., Loveless R.W., Lawson A.M., Margolis R.U., Feizi T. J. Biol. Chem. 272:1997;8924-8931
9. Montreuil J. Adv. Carbohydr. Chem. Biochem. 37:1980;157-233
10. Gellerfors P., Axelsson K., Helander A., Johansson S., Kenne L., Lindqvist S., Pavlu B., Skottner A., Fryklund L. J. Biol. Chem. 264:1989;11444-11449
11. Helander A., Kenne L., Oscarson S., Peters T., Brisson J.-R. Carbohydr. Res. 230:1992;299-318
12. Widmalm G., Byrd R.A., Egan W. Carbohydr. Res. 229:1992;195-211
13. Keepers J.W., James T.L. J. Magn. Reson. 57:1984;404-426
14. Almond A., Duus J.Ø. J. Biomol. NMR. 20:2001;351-363
15. Woods R.J., Edge C.J., Wormald M.R., Dwek R.A. Bock K., Clausen H. Complex Carbohydrates in Drug Research. 1994;15-26 Munksgaard, Copenhagen
16. Woods R.J., Pathiaseril A., Wormald M.R., Edge C.J., Dwek R.A. Eur. J. Biochem. 258:1998;372-386
17. Wormald M.R., Petrescu A.J., Pao Y.-L., Glithero A., Elliott T., Dwek R.A. Chem. Rev. 102:2002;371-386
18. Sayers E.W., Prestegard J.H. Biophys. J. 79:2000;3313-3329
19. Eklund R., Widmalm G. Carbohydr. Res. 338:2003;393-398
20. Asensio J.L., Cañada F.J., Cheng X., Khan N., Mootoo D.R., Jiménez-Barbero J. Chem. Eur. J. 6:2000;1035-1041
21. Höög C., Widmalm G. J. Phys. Chem. A. 104:2000;9443-9447
22. Espinosa J.-F., Bruix M., Jarreton O., Skrydstrup T., Beau J.-M., Jiménez-Barbero J. Chem. Eur. J. 5:1999;442-448
23. Csonka G.I., Schubert G.A., Perczel A., Sosa C.P., Csizmadia I.G. Chem. Eur. J. 8:2002;4718-4733
24. Vishnyakov A., Laaksonen A., Widmalm G. J. Mol. Graphics Modell. 19:2001;338-342. 396-397
25. Kirschner K.N., Woods R.J. Proc. Natl. Acad. Sci. U.S.A. 98:2001;10541-10545
26. Sandström C., Baumann H., Kenne L. J. Chem. Soc., Perkin Trans. 2. 1998;2385-2393
27. Höög C., Landersjö C., Widmalm G. Chem. Eur. J. 7:2001;3069-3077
28. Ekelöf K., Oscarson S. J. Org. Chem. 61:1996;7711-7718
29. Kjellberg A., Widmalm G. Biopolymers. 50:1999;391-399
30. Kupce E., Boyd J., Campbell I.D. J. Magn. Reson. B. 106:1995;300-303
31. Brooks B.R., Bruccoleri R.E., Olafson B.D., States D.J., Swaminathan S., Karplus M. J. Comput. Chem. 4:1983;187-217
32. MacKerell A.D. Jr., Bashford D., Bellott M., Dunbrack R.L. Jr., Evanseck J.D., Field M.J., Fischer S., Gao J., Guo H., Ha S., Joseph-McCarthy D., Kushnir L., Kuczera K., Lau F.T.K., Mattos C., Michnick S., Ngo T., Nguyen T.D., Prodhom B., Reiher W.E. III, Roux B., Schlenkrich M., Smith J.C., Stote R., Straub J., Watanabe M., Wiórkiewicz-Kuczera J., Yin D., Karplus M. J. Phys. Chem. B. 102:1998;3586-3616
33. Neria E., Fischer S., Karplus M. J. Chem. Phys. 105:1996;1902-1921
34. Hockney R.W. Meth. Comput. Phys. 9:1970;136-211
35. Berendsen H.J.C., Postma J.P.M., van Gunsteren W.F., DiNola A., Haak J.R. J. Chem. Phys. 81:1984;3684-3690
36. Ryckaert J.P., Ciccotti G., Berendsen H.J.C. J. Comput. Phys. 23:1977;327-341
37. Steinbach P.J., Brooks B.R. J. Comput. Chem. 15:1994;667-683