메뉴 건너뛰기




Volumn 86, Issue 5, 2004, Pages 2827-2836

Water Alignment, Dipolar Interactions, and Multiple Proton Occupancy during Water-Wire Proton Transport

Author keywords

[No Author keywords available]

Indexed keywords

WATER;

EID: 2142641787     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(04)74335-0     Document Type: Article
Times cited : (16)

References (62)
  • 1
    • 11744384413 scopus 로고
    • The Grotthuss mechanism
    • Agmon, N. 1995. The Grotthuss mechanism. Chem. Phys. Lett. 244:456-462.
    • (1995) Chem. Phys. Lett. , vol.244 , pp. 456-462
    • Agmon, N.1
  • 3
    • 0025823857 scopus 로고
    • Proton conductance by the gramicidin water-wire: Model for proton conductance in the F1F0 ATPases?
    • Akeson, M., and D. W. Deamer. 1991. Proton conductance by the gramicidin water-wire: model for proton conductance in the F1F0 ATPases? Biophys. J. 60:101-109.
    • (1991) Biophys. J. , vol.60 , pp. 101-109
    • Akeson, M.1    Deamer, D.W.2
  • 4
    • 25944434685 scopus 로고
    • Applications of quantum-classical and quantum-stochastic molecular dynamics for proton transfer processes
    • Bala, P., B. Lesyng, and J. A. McCammon. 1994. Applications of quantum-classical and quantum-stochastic molecular dynamics for proton transfer processes. Chem. Phys. 180:271-285.
    • (1994) Chem. Phys. , vol.180 , pp. 271-285
    • Bala, P.1    Lesyng, B.2    McCammon, J.A.3
  • 5
    • 0037733494 scopus 로고    scopus 로고
    • Soliton model for proton conductivity in Langmuir films
    • Bazeia, D., V. B. P. Leite, B. H. B. Lima, and F. Morales. 2001. Soliton model for proton conductivity in Langmuir films. Chem. Phys. Lett. 340:205-210.
    • (2001) Chem. Phys. Lett. , vol.340 , pp. 205-210
    • Bazeia, D.1    Leite, V.B.P.2    Lima, B.H.B.3    Morales, F.4
  • 7
    • 0031008228 scopus 로고    scopus 로고
    • The ATP synthase - A splendid molecular machine
    • Boyer, P. 1997. The ATP synthase - a splendid molecular machine. Annu. Rev. Biochem. 66:717-749.
    • (1997) Annu. Rev. Biochem. , vol.66 , pp. 717-749
    • Boyer, P.1
  • 9
    • 0036221414 scopus 로고    scopus 로고
    • Thermodynamic view of activation energies of proton transfer in various gramicidin A channels
    • Chernyshev, A., and S. Cukierman. 2002. Thermodynamic view of activation energies of proton transfer in various gramicidin A channels. Biophys. J. 82:182-192.
    • (2002) Biophys. J. , vol.82 , pp. 182-192
    • Chernyshev, A.1    Cukierman, S.2
  • 10
    • 4243284239 scopus 로고    scopus 로고
    • How fast do fluids squeeze through microscopic single-file channels?
    • Chou, T. 1998. How fast do fluids squeeze through microscopic single-file channels? Phys. Rev. Lett. 80:85-89.
    • (1998) Phys. Rev. Lett. , vol.80 , pp. 85-89
    • Chou, T.1
  • 11
    • 0003165326 scopus 로고    scopus 로고
    • Kinetics and thermodynamics across single-file pores: Solute permeability and rectified osmosis
    • Chou, T. 1999. Kinetics and thermodynamics across single-file pores: solute permeability and rectified osmosis. J. Chem. Phys. 110:606-615.
    • (1999) J. Chem. Phys. , vol.110 , pp. 606-615
    • Chou, T.1
  • 12
    • 0000411465 scopus 로고    scopus 로고
    • Entropy-driven pumping in zeolites and ion channels
    • Chou, T., and D. Lohse. 1999. Entropy-driven pumping in zeolites and ion channels. Phys. Rev. Lett. 82:3552-3555.
    • (1999) Phys. Rev. Lett. , vol.82 , pp. 3552-3555
    • Chou, T.1    Lohse, D.2
  • 13
    • 0037205240 scopus 로고    scopus 로고
    • A spin flip model for one-dimensional water-wire proton transport
    • Chou, T. 2002. A spin flip model for one-dimensional water-wire proton transport. J. Phys. Chem. A. 35:4515-4526.
    • (2002) J. Phys. Chem. A , vol.35 , pp. 4515-4526
    • Chou, T.1
  • 14
    • 0042845842 scopus 로고    scopus 로고
    • Ribosome recycling, diffusion, and mRNA loop formation in translational regulation
    • Chou, T. 2003. Ribosome recycling, diffusion, and mRNA loop formation in translational regulation. Biophys. J. 85:755-773.
    • (2003) Biophys. J. , vol.85 , pp. 755-773
    • Chou, T.1
  • 15
    • 0033587644 scopus 로고    scopus 로고
    • Modulating dipoles for structure-function correlations in the gramicidin A channel
    • Cotten, M., C. Tian, D. D. Busath, R. B. Shirts, and T. A. Cross. 1999. Modulating dipoles for structure-function correlations in the gramicidin A channel. Biochemistry. 38:9185-9197.
    • (1999) Biochemistry , vol.38 , pp. 9185-9197
    • Cotten, M.1    Tian, C.2    Busath, D.D.3    Shirts, R.B.4    Cross, T.A.5
  • 16
    • 0030786782 scopus 로고    scopus 로고
    • Proton conductance in gramicidin A and its dioxolane-linked dimer in different bilayers
    • Cukierman, S., E. P. Quigley, and D. S. Crumrine. 1997. Proton conductance in gramicidin A and its dioxolane-linked dimer in different bilayers. Biophys. J. 73:2489-2502.
    • (1997) Biophys. J. , vol.73 , pp. 2489-2502
    • Cukierman, S.1    Quigley, E.P.2    Crumrine, D.S.3
  • 17
    • 0023429474 scopus 로고
    • Proton permeation of lipid bilayers
    • Deamer, D. W. 1987. Proton permeation of lipid bilayers. J. Bioenerg. Biomembr. 19:457-479.
    • (1987) J. Bioenerg. Biomembr. , vol.19 , pp. 457-479
    • Deamer, D.W.1
  • 18
    • 0000609352 scopus 로고    scopus 로고
    • Solvation and hydrogen-bonding effects on proton wires
    • Dècornez, H., K. Drukker, and S. Hammes-Schiffer. 1999. Solvation and hydrogen-bonding effects on proton wires. J. Phys. Chem. A. 103:2891-2898.
    • (1999) J. Phys. Chem. A , vol.103 , pp. 2891-2898
    • Dècornez, H.1    Drukker, K.2    Hammes-Schiffer, S.3
  • 19
    • 0002214237 scopus 로고    scopus 로고
    • An exactly soluble non-equilibrium system: The asymmetric simple exclusion process
    • Derrida, B. 1998. An exactly soluble non-equilibrium system: the asymmetric simple exclusion process. Phys. Rep. 301:65-83.
    • (1998) Phys. Rep. , vol.301 , pp. 65-83
    • Derrida, B.1
  • 20
    • 17444439064 scopus 로고    scopus 로고
    • Proton transport through water-filled carbon nanotubes
    • Dellago, C., M. M. Naor, and G. Hummer. 2003. Proton transport through water-filled carbon nanotubes. Phys. Rev. Lett. 90:105902.
    • (2003) Phys. Rev. Lett. , vol.90 , pp. 105902
    • Dellago, C.1    Naor, M.M.2    Hummer, G.3
  • 21
    • 0033025559 scopus 로고    scopus 로고
    • Noncontact dipole effects on channel permeation. II. Trp conformations and dipole potentials in gramicidin A
    • Dorigo, A. E., D. G. Anderson, and D. D. Busath. 1999. Noncontact dipole effects on channel permeation. II. Trp conformations and dipole potentials in gramicidin A. Biophys. J. 76:1897-1908.
    • (1999) Biophys. J. , vol.76 , pp. 1897-1908
    • Dorigo, A.E.1    Anderson, D.G.2    Busath, D.D.3
  • 22
    • 0036708445 scopus 로고    scopus 로고
    • Continuum electrostatics fails to describe ion permeation in the gramicidin channel
    • Edwards, S., B. Corry, S. Kuyucak, and S.-H. Chung. 2002. Continuum electrostatics fails to describe ion permeation in the gramicidin channel. Biophys. J. 83:1348-1360.
    • (2002) Biophys. J. , vol.83 , pp. 1348-1360
    • Edwards, S.1    Corry, B.2    Kuyucak, S.3    Chung, S.-H.4
  • 25
    • 0035024033 scopus 로고    scopus 로고
    • Regulation of organelle acidity
    • Grabe, M., and G. Oster. 2001. Regulation of organelle acidity. J. Gen. Physiol. 117:329-343.
    • (2001) J. Gen. Physiol. , vol.117 , pp. 329-343
    • Grabe, M.1    Oster, G.2
  • 27
    • 0002036605 scopus 로고
    • Sur la décomposition de l'eau et des corps qu'elle tient en dissolution à l'aide de l'électricité galvanique
    • Grotthuss, C. J. T. 1806. Sur la décomposition de l'eau et des corps qu'elle tient en dissolution à l'aide de l'é lectricité galvanique, Ann. Chim. 58:54-74.
    • (1806) Ann. Chim. , vol.58 , pp. 54-74
    • Grotthuss, C.J.T.1
  • 28
    • 0018117903 scopus 로고
    • Potassium channels as multi-ion single-file pores
    • Hille, B., and W. Schwarz. 1978. Potassium channels as multi-ion single-file pores. J. Gen. Physiol. 72:409-442.
    • (1978) J. Gen. Physiol. , vol.72 , pp. 409-442
    • Hille, B.1    Schwarz, W.2
  • 29
    • 0015499206 scopus 로고
    • Ion transfer across lipid membranes in the presence of gramicidin A. I. Studies of the unit conductance channel
    • Hladky, S. B., and D. A. Haydon. 1972. Ion transfer across lipid membranes in the presence of gramicidin A. I. Studies of the unit conductance channel. Biochim. Biophys. Acta. 274:294-312.
    • (1972) Biochim. Biophys. Acta , vol.274 , pp. 294-312
    • Hladky, S.B.1    Haydon, D.A.2
  • 30
    • 0035829539 scopus 로고    scopus 로고
    • Water conduction through the hydrophobic channel of a carbon nanotube
    • Hummer, G., J. C. Rasaiah, and J. P. Noworyta. 2001. Water conduction through the hydrophobic channel of a carbon nanotube. Nature. 414:188-190.
    • (2001) Nature , vol.414 , pp. 188-190
    • Hummer, G.1    Rasaiah, J.C.2    Noworyta, J.P.3
  • 31
    • 0021358272 scopus 로고
    • The total electrostatic potential in a gramicidin channel
    • Jordan, P. C. 1984. The total electrostatic potential in a gramicidin channel. J. Membr. Biol. 78:91-102.
    • (1984) J. Membr. Biol. , vol.78 , pp. 91-102
    • Jordan, P.C.1
  • 32
    • 0042838377 scopus 로고    scopus 로고
    • Osmotic water transport through carbon nanotube membranes
    • Kalra, A., S. Garde, and G. Hummer. 2003. Osmotic water transport through carbon nanotube membranes. Proc. Natl. Acad. Sci. USA. 100:10175-10180.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 10175-10180
    • Kalra, A.1    Garde, S.2    Hummer, G.3
  • 33
    • 18844365436 scopus 로고    scopus 로고
    • Multispecies asymmetric simple exclusion process and its relation to traffic flow
    • Karimipour, V. 1999. Multispecies asymmetric simple exclusion process and its relation to traffic flow. Phys. Rev. E. 59:205-212.
    • (1999) Phys. Rev. E , vol.59 , pp. 205-212
    • Karimipour, V.1
  • 34
    • 0032579110 scopus 로고    scopus 로고
    • Asymmetric simple exclusion model with local inhomogeneity
    • Kolomeisky, A. B. 1998. Asymmetric simple exclusion model with local inhomogeneity. J. Phys. A Math. Gen. 31:1153-1164.
    • (1998) J. Phys. A Math. Gen. , vol.31 , pp. 1153-1164
    • Kolomeisky, A.B.1
  • 35
    • 0029057198 scopus 로고
    • Bacteriorhodopsin as a model for proton pumps
    • Lanyi, J. K. 1995. Bacteriorhodopsin as a model for proton pumps. Nature. 375:461-463.
    • (1995) Nature , vol.375 , pp. 461-463
    • Lanyi, J.K.1
  • 36
    • 0018072320 scopus 로고
    • Number of water molecules coupled to the transport of sodium, potassium and hydrogen ions via gramicidin, nonactin or valinomycin
    • Levitt, D. G., S. R. Elias, and J. M. Hautman. 1978. Number of water molecules coupled to the transport of sodium, potassium and hydrogen ions via gramicidin, nonactin or valinomycin. Biochim. Biophys. Acta. 512:436-451.
    • (1978) Biochim. Biophys. Acta , vol.512 , pp. 436-451
    • Levitt, D.G.1    Elias, S.R.2    Hautman, J.M.3
  • 37
    • 0007165005 scopus 로고    scopus 로고
    • Mobility and solvation of ions in channels
    • Lynden-Bell, R. M., and J. C. Rasaiah. 1996. Mobility and solvation of ions in channels. J. Chem. Phys. 105:9266-9280.
    • (1996) J. Chem. Phys. , vol.105 , pp. 9266-9280
    • Lynden-Bell, R.M.1    Rasaiah, J.C.2
  • 38
    • 84984085494 scopus 로고
    • Concerning the kinetics of polypeptide synthesis on polyribosomes
    • MacDonald, C. T., and J. H. Gibbs. 1969. Concerning the kinetics of polypeptide synthesis on polyribosomes. Biopolymers. 7:707-725.
    • (1969) Biopolymers , vol.7 , pp. 707-725
    • MacDonald, C.T.1    Gibbs, J.H.2
  • 39
    • 0033580290 scopus 로고    scopus 로고
    • The nature of the hydrated excess proton in water
    • Marx, D., M. E. Tuckerman, J. Hutter, and M. Parrinello. 1999. The nature of the hydrated excess proton in water. Nature. 397:601-604.
    • (1999) Nature , vol.397 , pp. 601-604
    • Marx, D.1    Tuckerman, M.E.2    Hutter, J.3    Parrinello, M.4
  • 40
    • 0000473772 scopus 로고
    • Calculation of the proton transfer rate using density matrix evolution and molecular dynamics simulations: Inclusion of the proton excited states
    • Mavri, J., and H. J. C. Berendsen. 1995. Calculation of the proton transfer rate using density matrix evolution and molecular dynamics simulations: inclusion of the proton excited states. J. Phys. Chem. 99:12711-12717.
    • (1995) J. Phys. Chem. , vol.99 , pp. 12711-12717
    • Mavri, J.1    Berendsen, H.J.C.2
  • 41
    • 0001557630 scopus 로고    scopus 로고
    • Quantum nuclear ab initio molecular dynamics study of water-wires
    • Mei, H. S., M. E. Tuckerman, D. E. Sagnell, and M. L. Klein. 1998. Quantum nuclear ab initio molecular dynamics study of water-wires. J. Phys. Chem. B. 102:10446-10458.
    • (1998) J. Phys. Chem. B , vol.102 , pp. 10446-10458
    • Mei, H.S.1    Tuckerman, M.E.2    Sagnell, D.E.3    Klein, M.L.4
  • 42
    • 0035499447 scopus 로고    scopus 로고
    • Energetic optimization of ion conduction rate by the K+ selectivity filter
    • Morais-Cabral, J. H., Y. Zhou, and R. MacKinnon. 2001. Energetic optimization of ion conduction rate by the K+ selectivity filter. Nature. 414:37-42.
    • (2001) Nature , vol.414 , pp. 37-42
    • Morais-Cabral, J.H.1    Zhou, Y.2    MacKinnon, R.3
  • 43
    • 0023428452 scopus 로고
    • Theory of passive proton conductance in lipid bilayers
    • Nagle, J. F. 1987. Theory of passive proton conductance in lipid bilayers. J. Bioenerg. Biomembr. 19:413-426.
    • (1987) J. Bioenerg. Biomembr. , vol.19 , pp. 413-426
    • Nagle, J.F.1
  • 44
    • 0345613372 scopus 로고
    • Molecular mechanisms for proton transport in membranes
    • Nagle, J. F., and H. J. Morowitz. 1978. Molecular mechanisms for proton transport in membranes. Proc. Natl. Acad. Sci. USA. 75:298-302.
    • (1978) Proc. Natl. Acad. Sci. USA , vol.75 , pp. 298-302
    • Nagle, J.F.1    Morowitz, H.J.2
  • 45
    • 0020967882 scopus 로고
    • Hydrogen bonded chain mechanisms for proton conduction and proton pumping
    • Nagle, J. F., and S. Tristram-Nagle. 1983. Hydrogen bonded chain mechanisms for proton conduction and proton pumping. J. Membr. Biol. 74:1-14.
    • (1983) J. Membr. Biol. , vol.74 , pp. 1-14
    • Nagle, J.F.1    Tristram-Nagle, S.2
  • 46
    • 0037654564 scopus 로고    scopus 로고
    • Mobility and conductivity of the proton transfer in hydrogen-bonded molecular systems
    • Pang, X. F., and Y. P. Feng. 2003. Mobility and conductivity of the proton transfer in hydrogen-bonded molecular systems. Chem. Phys. Lett. 373:392-401.
    • (2003) Chem. Phys. Lett. , vol.373 , pp. 392-401
    • Pang, X.F.1    Feng, Y.P.2
  • 47
    • 0001228862 scopus 로고
    • Nonlinear dielectric behavior of water in transmembrane ion channels: Ion energy barriers and the channel dielectric constant
    • Partenskii, M. B., and P. C. Jordan. 1992. Nonlinear dielectric behavior of water in transmembrane ion channels: ion energy barriers and the channel dielectric constant. J. Chem. Phys. 96:3906-3910.
    • (1992) J. Chem. Phys. , vol.96 , pp. 3906-3910
    • Partenskii, M.B.1    Jordan, P.C.2
  • 48
    • 0032755470 scopus 로고    scopus 로고
    • Noncontact dipole effects on channel permeation. III. Anomalous proton conductance effects in gramicidin
    • Phillips, L. R., C. D. Cole, R. J. Hendershot, M. Cotten, T. A. Cross, and D. D. Busath. 1999. Noncontact dipole effects on channel permeation. III. Anomalous proton conductance effects in gramicidin. Biophys. J. 77:2492-2501.
    • (1999) Biophys. J. , vol.77 , pp. 2492-2501
    • Phillips, L.R.1    Cole, C.D.2    Hendershot, R.J.3    Cotten, M.4    Cross, T.A.5    Busath, D.D.6
  • 49
    • 35949009655 scopus 로고
    • Soliton dynamics of hydrogen-bonded networks: A mechanism for proton conductivity
    • Pnevmatikos, S. 1988. Soliton dynamics of hydrogen-bonded networks: a mechanism for proton conductivity. Phys. Rev. Lett. 60:1534-1537.
    • (1988) Phys. Rev. Lett. , vol.60 , pp. 1534-1537
    • Pnevmatikos, S.1
  • 50
    • 0030011088 scopus 로고    scopus 로고
    • + translocation along the single-file water chain in the gramicidin A channel
    • + translocation along the single-file water chain in the gramicidin A channel. Biophys. J. 71:19-39.
    • (1996) Biophys. J. , vol.71 , pp. 19-39
    • Pomès, R.1    Roux, B.2
  • 51
    • 0031862465 scopus 로고    scopus 로고
    • + conduction along hydrogen-bonded chains of water molecules
    • + conduction along hydrogen-bonded chains of water molecules. Biophys. J. 75:33-40.
    • (1998) Biophys. J. , vol.75 , pp. 33-40
    • Pomès, R.1    Roux, B.2
  • 52
    • 0036151798 scopus 로고    scopus 로고
    • Membrane dipole potential modulates proton conductance through gramicidin channel: Movement of negative ionic defects inside the channel
    • Rokitskaya, T. I., E. A. Kotova, and Y. N. Antonenko. 2002. Membrane dipole potential modulates proton conductance through gramicidin channel: movement of negative ionic defects inside the channel. Biophys. J. 82:865-873.
    • (2002) Biophys. J. , vol.82 , pp. 865-873
    • Rokitskaya, T.I.1    Kotova, E.A.2    Antonenko, Y.N.3
  • 53
    • 0000359106 scopus 로고    scopus 로고
    • The dynamics of proton transfer in a water chain
    • Sadeghi, R. R., and H.-P. Cheng. 1999. The dynamics of proton transfer in a water chain. J. Chem. Phys. 111:2086-2094.
    • (1999) J. Chem. Phys. , vol.111 , pp. 2086-2094
    • Sadeghi, R.R.1    Cheng, H.-P.2
  • 54
    • 0029775587 scopus 로고    scopus 로고
    • Ab initio molecular dynamics study of proton transfer in a polyglycine analog of the ion channel gramicidin A
    • Sagnella, D. E., K. Laasonen, and M. L. Klein. 1996. Ab initio molecular dynamics study of proton transfer in a polyglycine analog of the ion channel gramicidin A. Biophys. J. 71:1172-1178.
    • (1996) Biophys. J. , vol.71 , pp. 1172-1178
    • Sagnella, D.E.1    Laasonen, K.2    Klein, M.L.3
  • 55
    • 0029878757 scopus 로고    scopus 로고
    • Structure and dynamics of hydronium in the ion channel gramicidin A
    • Sagnella, D. E., and G. A. Voth. 1996. Structure and dynamics of hydronium in the ion channel gramicidin A. Biophys. J. 70:2043-2051.
    • (1996) Biophys. J. , vol.70 , pp. 2043-2051
    • Sagnella, D.E.1    Voth, G.A.2
  • 56
    • 0001213767 scopus 로고    scopus 로고
    • The computer simulation of proton transport in water
    • Schmitt, U. W., and G. A. Voth. 1999. The computer simulation of proton transport in water. J. Chem. Phys. 111:9361-9381.
    • (1999) J. Chem. Phys. , vol.111 , pp. 9361-9381
    • Schmitt, U.W.1    Voth, G.A.2
  • 58
    • 0033638375 scopus 로고    scopus 로고
    • A combined molecular dynamics and diffusion model of single-proton conduction through gramicidin
    • Schumaker, M. F., R. Pomès, and B. Roux. 2000. A combined molecular dynamics and diffusion model of single-proton conduction through gramicidin. Biophys. J. 78:2840-2857.
    • (2000) Biophys. J. , vol.78 , pp. 2840-2857
    • Schumaker, M.F.1    Pomès, R.2    Roux, B.3
  • 59
    • 0035132857 scopus 로고    scopus 로고
    • Framework model for single proton conduction through gramicidin
    • Schumaker, M. F., R. Pomès, and B. Roux. 2001. Framework model for single proton conduction through gramicidin. Biophys. J. 80:12-30.
    • (2001) Biophys. J. , vol.80 , pp. 12-30
    • Schumaker, M.F.1    Pomès, R.2    Roux, B.3
  • 60
    • 0040629192 scopus 로고
    • Phase transitions in an exactly soluble one-dimensional exclusion process
    • Schütz, G. and E. Domany. 1993. Phase transitions in an exactly soluble one-dimensional exclusion process. J. Stat. Phys. 72:277-296.
    • (1993) J. Stat. Phys. , vol.72 , pp. 277-296
    • Schütz, G.1    Domany, E.2
  • 61
    • 0033021781 scopus 로고    scopus 로고
    • (In)validity of the constant field and constant currents assumptions in theories of ion transport
    • Syganow, A., and E. von Kitzing. 1999. (In)validity of the constant field and constant currents assumptions in theories of ion transport. Biophys. J. 76:768-781.
    • (1999) Biophys. J. , vol.76 , pp. 768-781
    • Syganow, A.1    Von Kitzing, E.2
  • 62
    • 0041843738 scopus 로고    scopus 로고
    • A computer simulation study of the hydrated proton in a synthetic proton channel
    • Wu, Y., and G. A. Voth. 2003. A computer simulation study of the hydrated proton in a synthetic proton channel. Biophys. J. 85:864-875.
    • (2003) Biophys. J. , vol.85 , pp. 864-875
    • Wu, Y.1    Voth, G.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.