Calcium-binding proteins afford calibration of dihedral-angle dependence of 3JNCγ coupling constant in aspartate and asparagine residues

Journal of Magnetic Resonance

Volumn 175, Issue 2, 2005, Pages 222-225

  Juranić, Nenad ^a   Atanasova, Elena ^a   Moncrieffe, Martin C ^b   Prendergast, Franklyn G ^a   MacUra, Slobodan ^a  

^a MAYO CLINIC   (United States)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

Asparagine; Aspartate; Calmodulin; Conformation; Metal binding; Nitrogen carbon; Side chain; Spin spin couplings; Vicinal couplings

Indexed keywords

AMINO ACIDS; CALCIUM; CALIBRATION; CONFORMATIONS; HYDROGEN BONDS; IONS;

ASPARAGINE; ASPARTATE; CALMODULIN; METAL BINDING; NITROGEN-CARBON; SIDE CHAIN; SPIN-SPIN COUPLINGS; VICINAL COUPLINGS;

PROTEINS;

ASPARAGINE; ASPARTIC ACID; CALCIUM BINDING PROTEIN;

ARTICLE; CALIBRATION; CHEMICAL STRUCTURE; CHEMISTRY; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE; PROTEIN CONFORMATION;

ASPARAGINE; ASPARTIC ACID; CALCIUM-BINDING PROTEINS; CALIBRATION; MOLECULAR STRUCTURE; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN CONFORMATION;

EID: 21244490888     PISSN: 10907807     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmr.2005.04.008     Document Type: Article

References (17)

1. M. Karplus Contact electron-spin coupling of nuclear moments J. Chem. Phys. 30 1959 11 15
2. V.F. Bystrov Spin-spin coupling and the conformational states of peptide systems Prog. NMR Spectrosc. 10 1976 41
3. E. Cordier, and S. Grzesiek Direct observation of hydrogen bonds in proteins by interresidue (3h)J(NC′) scalar couplings J. Am. Chem. Soc. 121 1999 1601 1602
4. G. Cornilescu, J.S. Hu, and A. Bax Identification of the hydrogen bonding network in a protein by scalar couplings J. Am. Chem. Soc. 121 1999 2949 2950
5. N. Juranic, M.C. Moncrieffe, V.A. Likic, F.G. Prendergast, and S. Macura Structural dependencies of h3JNC′ scalar coupling in protein H-bond chains J. Am. Chem. Soc. 124 2002 14221 14226
6. R. Konrat, D.R. Muhandiram, N.A. Farrow, and L.E. Kay Pulse schemes for the measurement of (3)J(C′C gamma) and (3)J(NC gamma) scalar couplings in N-15,C-13 uniformly labeled proteins J. Biomol. NMR 9 1997 409 422
7. J.S. Hu, and A. Bax chi(1) angle information from a simple two-dimensional NMR experiment that identifies trans (3)J(NC)gamma couplings in isotopically enriched proteins J. Biomol. NMR 9 1997 323 328
8. C. Griesinger, M. Hennig, J.P. Marino, B. Reif, C. Richter, and H. Schwalbe Methods for determination of torsion angle restarints in biomacromolecules N.R. Krishna L.J. Berliner Modern techniques in protein NMR Vol. 16 1999 Plenum Press 259 367
9. C. Perez, F. Lohr, H. Ruterjans, and J.M. Schmidt Self-consistent Karplus parametrization of (3)J couplings depending on the polypeptide side-chain torsion chi(1) J. Am. Chem. Soc. 123 2001 7081 7093
10. V.N. Solkan, and V.F. Bystrov Theoretical calculations of spin-spin interaction in the NMR spectra of peptide fragment Bull. Acad. Sci. USSR. Chem. Sci. 23 1975 95 100
11. G. Cornilescu, B.E. Ramirez, M.K. Frank, G.M. Clore, A.M. Gronenborn, and A. Bax Correlation between (3h)J(NC′) and hydrogen bond length in proteins J. Am. Chem. Soc. 121 1999 6275 6279
12. N. Juranic, and S. Macura Correlations among (1)J(NC′) and (h3)J(NC′) coupling constants in the hydrogen-bonding network of human ubiquitin J. Am. Chem. Soc. 123 2001 4099 4100
13. J.M. Schmidt, M. Blumel, F. Lohr, and H. Ruterjans Self-consistent (3)J coupling analysis for the joint calibration of Karplus coefficients and evaluation of torsion angles J. Biomol. NMR 14 1999 1 12
14. J.C.G. Sacchettini, and L.J. Banaszak Refined apoprotein structure of rat intestinal fatty acid binding protein produced in Escherichia coli Proc. Natl. Acad. Sci. USA 86 1989 7736 7740
15. G. Scapin, J.I. Gordon, and J.C. Sacchettini Refinement of the structure of recombinant rat intestinal fatty acid-binding apoprotein at 1.2-Å resolution J. Biol. Chem. 267 1992 4253 4269
16. V.D. Kumar, L. Lee, and B.F. Edwards Refined crystal structure of calcium-liganded carp parvalbumin 4.25 at 1.5-Å resolution Biochemistry-US 29 1990 1404 1412
17. R. Chattopadhyaya, W.E. Meador, A.R. Means, and F.A. Quiocho Calmodulin structure refined at 1.7 angstrom resolution J. Mol. Biol. 228 1992 1177 1192