메뉴 건너뛰기




Volumn 169, Issue 1-3, 2005, Pages 130-134

Molecular dynamics simulations of the Trp repressor-DNA complex and the AV77 mutant

Author keywords

AV77 mutant; Hydrogen bond; Molecular dynamics simulation; Protein DNA interaction; Trp repressor

Indexed keywords

COMPLEXATION; COMPUTER SIMULATION; CORRELATION METHODS; DNA; ESCHERICHIA COLI; HYDROGEN BONDS; MONOMERS; MUTAGENESIS; PROTEINS;

EID: 21244473626     PISSN: 00104655     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cpc.2005.03.031     Document Type: Conference Paper
Times cited : (1)

References (17)
  • 1
    • 0019382235 scopus 로고
    • Structure and regulation of aroh, the structural gene for the tryptophan-repressible 3-deoxy-d-arabino-heptulosonic acid-7-phosphate synthetase of Escherichia coli
    • G. Zurawski, R.P. Gunsulas, K.D. Brown, and C. Yanofsky Structure and regulation of aroh, the structural gene for the tryptophan-repressible 3-deoxy-d-arabino-heptulosonic acid-7-phosphate synthetase of Escherichia coli J. Mol. Biol. 145 1981 47 73
    • (1981) J. Mol. Biol. , vol.145 , pp. 47-73
    • Zurawski, G.1    Gunsulas, R.P.2    Brown, K.D.3    Yanofsky, C.4
  • 2
    • 0026525555 scopus 로고
    • Synergism between the Trp repressor and tyr repressor in repression of the arol promoter of Escherichia coli k-12
    • V.M. Heatwole, and R.L. Somerville Synergism between the Trp repressor and tyr repressor in repression of the arol promoter of Escherichia coli k-12 J. Bacteriol. 174 1992 331 335
    • (1992) J. Bacteriol. , vol.174 , pp. 331-335
    • Heatwole, V.M.1    Somerville, R.L.2
  • 4
    • 0023955176 scopus 로고
    • Gel retardation at low pH resolves Trp repressor-DNA complexes for quantitative study
    • J. Carey Gel retardation at low pH resolves Trp repressor-DNA complexes for quantitative study Proc. Natl. Acad. Sci. USA 85 1988 875 979
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 875-979
    • Carey, J.1
  • 5
    • 0024418115 scopus 로고
    • Serine to cysteine mutations in Trp repressor protein alter tryptophan and operator binding
    • W.Y. Chou, C. Bieber, and C.S. Mattheus Serine to cysteine mutations in Trp repressor protein alter tryptophan and operator binding J. Biol. Chem. 264 1989 8309 8313
    • (1989) J. Biol. Chem. , vol.264 , pp. 8309-8313
    • Chou, W.Y.1    Bieber, C.2    Mattheus, C.S.3
  • 6
    • 0026610724 scopus 로고
    • The nh2-terminal arms of Trp repressor participate in repressor/operator association
    • B. Hurlburt, and C. Yanofski The nh2-terminal arms of Trp repressor participate in repressor/operator association Nucl. Acids Res. 20 1992 337 341
    • (1992) Nucl. Acids Res. , vol.20 , pp. 337-341
    • Hurlburt, B.1    Yanofski, C.2
  • 7
    • 21244497687 scopus 로고
    • The nh2-terminal arms of Trp repressor participate in repressor/operator association
    • R.L. Kelley, and C. Yanofski The nh2-terminal arms of Trp repressor participate in repressor/operator association Proc. Natl. Acad. Sci. USA 82 1995 483 487
    • (1995) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 483-487
    • Kelley, R.L.1    Yanofski, C.2
  • 11
    • 0010262629 scopus 로고    scopus 로고
    • Orac: A molecular dynamics program to simulate complex molecular systems with realistic electrostatic interactions
    • T.D.P. Procacci, E. Paci, and M. Marchi Orac: a molecular dynamics program to simulate complex molecular systems with realistic electrostatic interactions J. Comp. Chem. 18 1997 1848 1862
    • (1997) J. Comp. Chem. , vol.18 , pp. 1848-1862
    • Procacci, T.D.P.1    Paci, E.2    Marchi, M.3
  • 12
    • 33646650705 scopus 로고
    • Reversible multiple time scale molecular dynamics
    • B.J.B.M. Tuckerman, and G.J. Martyna Reversible multiple time scale molecular dynamics J. Comp. Chem. 97 1992 1990 2001
    • (1992) J. Comp. Chem. , vol.97 , pp. 1990-2001
    • Tuckerman, B.J.B.M.1    Martyna, G.J.2
  • 14
    • 84977266737 scopus 로고
    • Die berechnung optischer und elektrostatischer gitterpotentiale
    • P.P. Ewald Die berechnung optischer und elektrostatischer gitterpotentiale Ann. Phys. 64 1921 253 287
    • (1921) Ann. Phys. , vol.64 , pp. 253-287
    • Ewald, P.P.1
  • 15
    • 0000615669 scopus 로고
    • Function minimization by conjugate gradients
    • R. Fletcher, and C.M. Reeves Function minimization by conjugate gradients Comput. J. 7 1964 149 154
    • (1964) Comput. J. , vol.7 , pp. 149-154
    • Fletcher, R.1    Reeves, C.M.2
  • 16
    • 34547809547 scopus 로고
    • A unified formulation of the constant temperature molecular dynamics methods
    • S. Nosé A unified formulation of the constant temperature molecular dynamics methods J. Chem. Phys. 81 1984 511 519
    • (1984) J. Chem. Phys. , vol.81 , pp. 511-519
    • Nosé, S.1
  • 17
    • 21244472944 scopus 로고    scopus 로고
    • Molecular dynamics simulations of Trp-repressor and the av77 mutant in presence and absence of the l-tryptophan co-repressor
    • submitted for publication
    • M. Cavallari, A. Desideri, M. Falconi, M. Ferrario, Molecular dynamics simulations of Trp-repressor and the av77 mutant in presence and absence of the l-tryptophan co-repressor, JBSD (2004), submitted for publication
    • (2004) JBSD
    • Cavallari, M.1    Desideri, A.2    Falconi, M.3    Ferrario, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.