Multiple Rieske genes in prokaryotes: Exchangeable Rieske subunits in the cytochrome bc1-complex of Rubrivivax gelatinosus

Molecular Microbiology

Volumn 57, Issue 1, 2005, Pages 261-275

  Ouchane, Soufian ^a   Nitschke, Wolfgang ^b   Bianco, Pierre ^b   Vermeglio, André ^c   Astier, Chantal ^a  

^a CENTRE DE GÉNÉTIQUE MOLÉCULAIRE   (France)

^b AIX MARSEILLE UNIVERSITÉ   (France)

^c IRFM   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; BACTERIAL PROTEIN; IRON SULFUR PROTEIN; PETA1 PROTEIN; PETA2 PROTEIN; UBIQUINOL CYTOCHROME C REDUCTASE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; CYANOBACTERIUM; ELECTRON SPIN RESONANCE; ELECTRON TRANSPORT; ENZYME KINETICS; ENZYME SUBUNIT; ESCHERICHIA COLI; GENE DELETION; GENE DISRUPTION; GENE DUPLICATION; GENE IDENTIFICATION; GENE INSERTION; MOLECULAR EVOLUTION; MONITORING; MUTANT; NONHUMAN; OPERON; PETA GENE; PETA1 GENE; PETA12 GENE; PETA2 GENE; PETB GENE; PHOTOOXIDATION; PHOTOSYNTHESIS; PHOTOTROPHIC BACTERIUM; PHYLOGENY; PRIORITY JOURNAL; PROKARYOTE; PROTEIN PURIFICATION; PROTEOBACTERIA; RIESKE GENE; RUBRIVIVAX GELATINOSUS; SEQUENCE HOMOLOGY; SIGNAL TRANSDUCTION;

AMINO ACID SEQUENCE; BACTERIA; BETAPROTEOBACTERIA; ELECTROCHEMISTRY; ELECTRON SPIN RESONANCE SPECTROSCOPY; ELECTRON TRANSPORT COMPLEX III; ESCHERICHIA COLI; GENOME, BACTERIAL; IRON-SULFUR PROTEINS; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; MULTIPROTEIN COMPLEXES; MUTATION; PHYLOGENY; PROKARYOTIC CELLS; PROTEIN SUBUNITS; RECOMBINANT PROTEINS;

CELLULAR ORGANISMS; CYANOBACTERIA; ESCHERICHIA COLI; PROKARYOTA; PROTEOBACTERIA; RUBRIVIVAX; RUBRIVIVAX GELATINOSUS;

EID: 21244461968     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2005.04685.x     Document Type: Article

References (49)

1. Agalidis, I., Rivas, E., and Reiss-Husson, F. (1990) Reaction center-light harvesting B875 complex from Rhodocyclus gelatinosus: characterization and identification of quinones. Photosynth Res 23: 249-255.
2. Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
3. Baymann, F., Lebrun, E., Brugna, M., Schoepp-Cothenet, B., Giudici-Orticoni, M.T., and Nitschke, W. (2003) The redox protein construction kit: pre-last universal common ancestor evolution of energy-conserving enzymes. Philos Trans R Soc Lond B Biol Sci 358: 267-274.
4. Baymann, F., Lebrun, E., and Nitschke, W. (2004) Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome. Proc Natl Acad Sci USA 101: 17737-17740.
5. Berry, E.A., Guergova-Kuras, M., Huang, L.S., and Crofts, A.R. (2000) Structure and function of cytochrome bc complexes. Annu Rev Biochem 69: 1005-1075.
6. Bowyer, J.R., Edwards, C.A., Ohnishi, T., and Trumpower, B.L. (1982) An analogue of ubiquinone which inhibits respiration by binding to the iron-sulfur protein of the cytochrome b-c1 segment of the mitochondrial respiratory chain. J Biol Chem 257: 8321-8330.
7. Brasseur, G., Bruscella, P., Bonnefoy, V., and Lemesle-Meunier, D. (2002) The bc(1) complex of the iron-grown acidophilic chemolithotrophic bacterium Acidithiobacillus ferrooxidans functions in the reverse but not in the forward direction. Is there a second bc(1) complex? Biochim Biophys Acta 1555: 37-43.
8. Carrell, C.J., Zhang, H., Cramer, W.A., and Smith, J.L. (1997) Biological identity and diversity in photosynthesis and respiration: structure of the lumen-side domain of the chloroplast Rieske protein. Structure 5: 1613-1625.
9. Colbert, C.L., Couture, M.M., Eltis, L.D., and Bolin, J.T. (2000) A cluster exposed: structure of the Rieske ferredoxin from biphenyl dioxygenase and the redox properties of Rieske Fe-S proteins. Structure Fold Des 8: 1267-1278.
10. o site catalysis. J Biol Chem 277: 3471-3476.
11. Darrouzet, E., Valkova-Valchanova, M., Moser, C.C., Dutton, P.L., and Daldal, F. (2000a) Uncovering the [2Fe2S] domain movement in cytochrome bc1 and its implications for energy conversion. Proc Natl Acad Sci USA 97: 4567-4572.
12. Darrouzet, E., Valkova-Valchanova, M., and Daldal, F. (2000b) Probing the role of the Fe-S subunit hinge region during Q(o) site catalysis in Rhodobacter capsulatus bc(1) complex. Biochemistry 39: 15475-15483.
13. Dutton, P.L. (1971) Oxidation-reduction potential dependence of the interaction of cytochromes, bacteriochlorophyll and carotenoids at 77 degrees K in chromatophores of Chromatium D and Rhodopseudomonas gelatinosa. Biochim Biophys Acta 226: 63-80.
14. Ellis, P.J., Conrads, T., Hille, R., and Kuhn, P. (2001) Crystal structure of the 100 kDa arsenite oxidase from Alcaligenes faecalis in two crystal forms at 1.64 A and 2.03 A. Structure (Camb) 9: 125-132.
15. Gray, K.A., and Daldal, F. (1995) Mutational Studies of the Cytochrome bc1 Complex. Dordrecht, the Netherlands: Kluwer Academic Publishers Group.
16. Hauska, G., Hurt, E., Gabellini, N., and Lockau, W. (1983) Comparative aspects of quinol-cytochrome c/plastocyanin oxidoreductases. Biochim Biophys Acta 726: 97-133.
17. Heineman, W.R., and Kissinger, P.T. (1996) Laboratory Techniques in Electroanalytical Chemistry. 2nd Edn. Kissinger, P.T., and Heineman, W.R. (eds). New York: Marcel Dekker.
18. Hill, H.A.O., Page, D.J., and Walton, N.J. (1987) Direct electrochemistry of bacterial cytochrome c551 at surface modified gold electrodes. J Electroanal Chem 217: 129-140.
19. Iwasaki, T., Imai, T., Urushiyama, A., and Oshima, T. (1996) Redox-linked ionization of sulredoxin, an archaeal Rieske-type [2Fe-2S] protein from Sulfolobus sp. strain 7. J Biol Chem 271: 27659-27663.
20. Iwata, S., Lee, J.W., Okada, K., Lee, J.K., Iwata, M., Rasmussen, B., et al. (1998) Complete structure of the 11-subunit bovine mitochondrial cytochrome bc1 complex. Science 281: 64-71.
21. Joliot, P., Béal, D., and Frilley, B. (1980) Une nouvelle méthode spectrophotométrique destinée à l'étude des réactions photosynthétiques. J Chim Phys 77: 209-216.
22. Kallas, T. (1994) The cytochrome b6f complex. In The Molecular Biology of Cyanobacteria. Bryant, D.A. (ed.). Dordrecht, the Netherlands: Kluwer Academic Publishers Group, pp. 259-317.
23. Kovach, M.E., Phillips, R.W., Elzer, P.H., Roop, R.M., II, and Peterson, K.M. (1994) pBBR1MCS: a broad-host-range cloning vector. Biotechniques 16: 800-802.
24. Lebrun, E., Brugna, M., Baymann, F., Muller, D., Lievremont, D., Lett, M.C., and Nitschke, W. (2003) Arsenite oxidase, an ancient bioenergetic enzyme. Mol Biol Evol 20: 686-693.
25. Levican, G., Bruscella, P., Guacunano, M., Inostroza, C., Bonnefoy, V., Holmes, D.S., and Jedlicki, E. (2002) Characterization of the petl and res operons of Acidithiobacillus ferrooxidans. J Bacteriol 184: 1498-1501.
26. Link, T.A., Saynovits, M., Assmann, C., Iwata, S., Ohnishi, T., and von Jagow, G. (1996) Isolation, characterisation and crystallisation of a water-soluble fragment of the Rieske iron-sulfur protein of bovine heart mitochondrial bc1 complex. Eur J Biochem 237: 71-75.
27. Lynch, M., and Conery, J.S. (2000) The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
28. Lynch, M., and Conery, J.S. (2003) The origins of genome complexity. Science 302: 1401-1404.
29. Menin, L., Yoshida, M., Jaquinod, M., Nagashima, K.V., Matsuura, K., Parot, P., and Vermeglio, A. (1999) Dark aerobic growth conditions induce the synthesis of a high midpoint potential cytochrome c8 in the photosynthetic bacterium Rubrivivax gelatinosus. Biochemistry 38: 15238-15244.
30. Nagashima, K.V., Matsuura, K., Shimada, K., and Vermeglio, A. (2002) High-potential iron-sulfur protein (HiPIP) is the major electron donor to the reaction center complex in photosynthetically growing cells of the purple bacterium Rubrivivax gelatinosus. Biochemistry 41: 14028-14032.
31. Nitschke, W., and Dracheva, S.M. (1995) Reaction Center Associated Cytochromes. Dordrecht, the Netherlands: Kluwer Academic Publishers Group.
32. Osiewacz, H.D., and McIntosh, L. (1987) Nucleotide sequence of a member of the psbA multigene family from the unicellular cyanobacterium Synechocystis 6803. Nucleic Acids Res 15: 10585.
33. Ouchane, S., Picaud, M., Reiss-Husson, F., Vernotte, C., and Astier, C. (1996) Development of gene transfer methods for Rubrivivax gelatinosus S1: construction, characterization and complementation of a puf operon deletion strain. Mol Gen Genet 252: 379-385.
34. Ouchane, S., Agalidis, I., and Astier, C. (2002) Natural resistance to inhibitors of the ubiquinol cytochrome c oxidoreductase of Rubrivivax gelatinosus: sequence and functional analysis of the cytochrome bc(1) complex. J Bacteriol 184: 3815-3822.
35. Prentki, P., and Krisch, H.M. (1984) In vitro insertional mutagenesis with a selectable DNA fragment. Gene 29: 303-313.
36. Rieske, J.S., Hansen, R.E., and Zaugg, W.S. (1964) Studies on the electron transfer system. 58. Properties of a new oxidation-reduction component of the respiratory chain as studied by electron paramagnetic resonance spectroscopy. J Biol Chem 239: 3017-3022.
37. Rott, M.A., Witthuhn, V.C., Schilke, B.A., Soranno, M., Ali, A., and Donohue, T.J. (1993) Genetic evidence for the role of isocytochrome c2 in photosynthetic growth of Rhodobacter sphaeroides Spd mutants. J Bacteriol 175: 358-366.
38. Saitou, N., and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
39. Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
40. Schmidt, C.L., and Shaw, L. (2001) A comprehensive phylogenetic analysis of Rieske and Rieske-type iron-sulfur proteins. J Bioenerg Biomembr 33: 9-26.
41. Schneider, D., Skrzypczak, S., Anemuller, S., Schmidt, C.L., Seidler, A., and Rögner, M. (2002) Heterogeneous Rieske proteins in the cytochrome b6f complex of Synechocystis PCC6803? J Biol Chem 277: 10949-10954.
42. Schneider, D., Berry, S., Volkmer, T., Seidler, A., and Rögner, M. (2004) PetC1 is the major Rieske iron-sulfur protein in the cytochrome b6f complex of Synechocystis sp. PCC 6803. J Biol Chem 279: 39383-39388.
43. Schoepp, B., Parot, P., Menin, L., Gaillard, J., Richaud, P., and Vermeglio, A. (1995) In vivo participation of a high potential iron-sulfur protein as electron donor to the photochemical reaction center of Rubrivivax gelatinosus. Biochemistry 34: 11736-11742.
44. Schütz, M., Brugna, M., Lebrun, E., Baymann, F., Huber, R., Stetter, K.O., et al. (2000) Early evolution of cytochrome bc complexes. J Mol Biol 300: 663-675.
45. Thomas, P.E., Ryan, D., and Levin, W. (1976) An improved staining procedure for the detection of the peroxidase activity of cytochrome P-450 on sodium dodecyl sulfate polyacrylamide gels. Anal Biochem 75: 168-176.
46. Trumpower, B.L. (1990) Cytochrome bc1 complexes of microorganisms. Microbiol Rev 54: 101-129.
47. Uffen, R.L. (1976) Anaerobic growth of a Rhodopseudomonas species in the dark with carbon monoxide as sole carbon and energy substrate. Proc Natl Acad Sci USA 73: 3298-3302.
48. Yan, J., and Cramer, W.A. (2003) Functional insensitivity of the cytochrome b6f complex to structure changes in the hinge region of the Rieske iron-sulfur protein. J Biol Chem 278: 20925-20933.
49. Zhang, Z., Huang, L., Shulmeister, V.M., Chi, Y.I., Kim, K.K., Hung, L.W., et al. (1998) Electron transfer by domain movement in cytochrome bc1. Nature 392: 677-684.