Using genotype probabilities in survival analysis: A scrapie case

Genetics Selection Evolution

Volumn 37, Issue 4, 2005, Pages 403-415

  Vitezica, Zulma G ^a   Elsen, Jean Michel ^a   Rupp, Rachel ^a   Díaz, Clara ^b  

^a CEMAGREF   (France)

^b INIA   (Spain)

Author keywords

Genotype probabilities; PrP genotypes; Scrapie; Survival analysis

Indexed keywords

GENOTYPE; SURVIVAL;

ANIMAL; ARTICLE; EPIDEMIC; FEMALE; GENETIC PREDISPOSITION; GENETICS; GENOTYPE; MALE; MORTALITY; PRION; SCRAPIE; SHEEP; SURVIVAL RATE;

ANIMALS; DISEASE OUTBREAKS; FEMALE; GENETIC PREDISPOSITION TO DISEASE; GENOTYPE; MALE; PRIONS; SCRAPIE; SHEEP; SURVIVAL RATE;

ANIMALIA; OVIS ARIES;

EID: 21244461538     PISSN: 0999193X     EISSN: None     Source Type: Journal    
DOI: 10.1051/gse:2005008     Document Type: Article

References (15)

1. Baylis M., Goldman W., Houston F., Cairns D., Chong A., Ross A., Smith A., Hunter N., McLean A.R., Scrapie endemic in fully PrP-genotyped sheep flock, J. Gen. Virol. 83 (2002) 2907-2914.
2. Bishop S., Breeding for Disease Resistance: uniting genetics and epidemiology, course notes, 2002.
3. Díaz C., Vitezica Z.G., Rupp R., Eisen J.M., El uso de la predicción de genotipos en el análisis de supervivencia: un caso de scrapie, ITEA 24 (II) (2003) 456-458.
4. Ducrocq V., Survival Analysis Applied to Epidemiology, course notes, 2002.
5. Ducrocq V., Sölkner J., The Survival Kit. A Fortran package for the analysis of survival data, in: Proceedings of the 6th World Congress on Genetics Applied to Livestock Production, January 11-16, 1998, Vol. 27, University of New England, Armidale, pp. 447-448.
6. Elsen J.M., Amigues Y., Scheicher F., Ducrocq V., Andreoletti O., Eychenne F., Tien Khang J.V., Poivey J.P., Lantier F., Laplanche J.L., Genetic susceptibility and transmission factors in scrapie: detailed analysis of an epidemic in a closed flock of Romanov, Arch. Virol. 144 (1999) 431-445.
7. Fernando R.L., Stricker C., Eiston R.C., An efficient algorithm to compute the posterior genotypic distribution for every member of a pedigree without loops, Theor. Appl. Genet. 87 (1993) 89-93.
8. Hofer A., Kennedy B.W., Genetic evaluation for a quantitative trait controlled by a polygenes and a major locus with genotypes not or only partially known, Genet. Sel. Evol. 25 (1993) 537-555.
9. Hunter N., Foster J.D., Goldman W., Stear M.J., Hope J., Bostock C., Natural scrapie in a closed flock of Cheviot sheep occurs only in specific PrP genotypes, Arch. Virol. 141 (1996) 809-824.
10. Janss L.L.G., van Arendonk J.A.M., van der Werf J.H.J., Computing approximate monogenic model likelihoods in large pedigrees with loops, Genet. Sel. Evol. 27 (1995) 567-579.
11. Kinghorn B.P., Kennedy B.W., Smith C., A method of screening for genes of major effect, Genetics 134 (1993) 351-360.
12. Klein J.P., Moeschberger M.L., Survival Analysis: Techniques for Censored and Truncated data, Springer-Verlag, New York Inc., 1997.
13. Meuwissen T.H.E., Goddard M.E., Estimation of effects of quantitative trait loci in large complex pedigrees, Genetics 146 (1997) 409-416.
14. Moreno C.R., Lantier I., Lantier F, Andreoletti O., Vaiman D., Sarradin P., Echeynne F., Cribiu E.P., Cosseddu G., Elsen J.M., Transposition to sheep of mouse quantitative trait loci (QTL) influencing susceptibility to prion diseases, in: Proceedings of the 7th World Congress on Genetics Applied to Livestock Production, August 19-23, 2002, Vol. 31, pp. 687-690.
15. Searle S.R., Linear Models, John Wiley & Sons, New York Inc., 1971.